Adenovirus Type 5 Virions Asymmetrically Lose Icosahedral Structure At Low Phs Of Endosomes,
2013
University of Richmond
Adenovirus Type 5 Virions Asymmetrically Lose Icosahedral Structure At Low Phs Of Endosomes, Jennifer Marie Jarboe
Honors Theses
After receptor mediated endocytosis into an endosome, human Adenovirus Type 5 (Ad5) undergoes structural changes that allow the virus to release a viral protein, pVI, that lyses the endosome and releases the virus core into the cytosol, where it travels to the nucleus to insert its genome. Structural studies of Ad5 at a range of pHs typical of endosomes (7.5-4.5) using a transmission electron microscope show that Ad5 undergoes asymmetrical loss of proteins from vertex regions at the pH of the late endosome (pH5.15). Following further acidification, Ad5 ejects core material preferentially through one vertex—indicating an asymmetry at one vertex …
Thermodynamics Of Binding By Calmodulin Correlates With Target Peptide Α-Helical Propensity,
2013
University of Kentucky
Thermodynamics Of Binding By Calmodulin Correlates With Target Peptide Α-Helical Propensity, Tori B. Dunlap, Jessime M. Kirk, Emily A. Pena, Meghan S. Yoder, Trevor P. Creamer
Center for Structural Biology Faculty Publications
In this work, we have examined contributions to the thermodynamics of calmodulin (CaM) binding from the intrinsic propensity for target peptides to adopt an α-helical conformation. CaM target sequences are thought to commonly reside in disordered regions within proteins. Using the ability of TFE to induce α-helical structure as a proxy, the six peptides studied range from having almost no propensity to adopt α-helical structure through to a very high propensity. This despite all six peptides having similar CaM-binding affinities. Our data indicate there is some correlation between the deduced propensities and the thermodynamics of CaM binding. This finding implies …
Hydroxylamine Acutely Activates Glucose Uptake In L929 Fibroblast Cells,
2013
Calvin University
Hydroxylamine Acutely Activates Glucose Uptake In L929 Fibroblast Cells, Larry L. Louters, Jared P. Scripture, David P. Kuipers, Stephen M. Gunnink
University Faculty Publications and Creative Works
Nitroxyl (HNO) has a unique, but varied, set of biological properties including beneficial effects on cardiac contractility and stimulation of glucose uptake by GLUT1. These biological effects are largely initiated by HNO's reaction with cysteine residues of key proteins. The intracellular production of HNO has not yet been demonstrated, but the small molecule, hydroxylamine (HA), has been suggested as possible intracellular source. We examined the effects of this molecule on glucose uptake in L929 fibroblast cells. HA activates glucose uptake from 2 to 5-fold within two minutes. Prior treatment with thiol-active compounds, such as iodoacetamide (IA), cinnamaldehyde (CA), or phenylarsine …
Polystyrene: A Potential Standard For Developing In Vitro Cellular Tracking Methods For Nanotoxicology,
2013
Technological University Dublin
Polystyrene: A Potential Standard For Developing In Vitro Cellular Tracking Methods For Nanotoxicology, Jennifer Dorney
Doctoral
Nanotoxicology has emerged as a discipline of a result of the revolution of nanotechnology. While nanotoxicology is in its infancy, there is a lack of toxicological data for nanoparticles, naturally occurring or commercially produced. The need for information regarding mechanisms associated with nanoparticle uptake by biological cells, as well as internalisation and accumulation of nanoparticles once penetrating cell membranes, is imperative. This project will focus on the internalisation studies of surface modified polystyrene nanoparticles. An in vitro lung model consisting of A549 (ATCC No: CRL185), a carcinogenic lung epithelial cell line, was employed to investigate the biocompatibility of nano scaled …
The Inner Workings Of The Dna Copying Nanomachine : Kinetic Studies Of Dna Polymerase I From The Thermophilic Bacterium Rhodothermus Marinus,
2013
University of Richmond
The Inner Workings Of The Dna Copying Nanomachine : Kinetic Studies Of Dna Polymerase I From The Thermophilic Bacterium Rhodothermus Marinus, Emily P. Kornberg
Honors Theses
DNA polymerase I from Rhodothermus marinus is a high-fidelity DNA polymerase capable of operating at high temperatures and incorporating 2´,3´-dideoxynucleotides. The R. marinus DNA Polymerase I active site contains an unusual proline in the middle of a mobile “O helix.” This proline residue is hypothesized to decrease the relative free energy of a kinetic checkpoint termed the ajar conformation, and thereby slow the incorporation of incorrect nucleotides. We aim to test the accuracy of a newly developed nucleotide incorporation model, in which the enzyme allows the template to interact with the bound dNTP in the ajar conformation, whether correct or …
Trimethylsilyl Trifluoromethanesulfonate-Mediated Additions To Acetals, Nitrones, And Aminals,
2013
University of Richmond
Trimethylsilyl Trifluoromethanesulfonate-Mediated Additions To Acetals, Nitrones, And Aminals, Chelsea Safran
Honors Theses
One-pot reactions were studied in order to develop procedures for the formation of important carbon-carbon and carbon-nitrogen bonds that are easily reproducible. In the presence of trimethylsilyl triflouromethanesulfonate (TMSOTf), Mukaiyama-aldol and aldol-like reactions occur in one-pot due to TMSOTf acting as a Lewis acid and silylating agent. A variety of reactions, including methoxyalkylation, were performed to form carbon-nitrogen bonds. Here, research involving TMSOTf-mediated additions to acetals, nitrones, and aminals will be discussed.
Bayesian Reconstruction Of P(R) Directly From Two-Dimensional Detector Images Via A Markov Chain Monte Carlo Method,
2013
Purdue University
Bayesian Reconstruction Of P(R) Directly From Two-Dimensional Detector Images Via A Markov Chain Monte Carlo Method, Sudeshna Paul, Alan M. Friedman, Chris Bailey-Kellogg, Bruce Craig
Dartmouth Scholarship
The interatomic distance distribution, P(r), is a valuable tool for evaluating the structure of a molecule in solution and represents the maximum structural information that can be derived from solution scattering data without further assumptions. Most current instrumentation for scattering experiments (typically CCD detectors) generates a finely pixelated two-dimensional image. In continuation of the standard practice with earlier one-dimensional detectors, these images are typically reduced to a one-dimensional profile of scattering intensities, I(q), by circular averaging of the two-dimensional image. Indirect Fourier transformation methods are then used to reconstruct P(r) from …
Effects Of Synthetic Histone Deacetylase Inhibitors On 3t3l1 Preadipocyte Adipogenic Differentiation Potential,
2013
Louisiana State University
Effects Of Synthetic Histone Deacetylase Inhibitors On 3t3l1 Preadipocyte Adipogenic Differentiation Potential, Vikramjeet Singh
Honors Capstones
No abstract provided.
Novel Architecture Of Costal Cartilage And Implications In Chest Wall Deformities,
2013
Old Dominion University
Novel Architecture Of Costal Cartilage And Implications In Chest Wall Deformities, Anthony J. Asmar
Biological Sciences Theses & Dissertations
Costal cartilage is a type of hyaline cartilage that forms rod-like structures that connect the ribs to the sternum. Deformation of costal cartilage is observed in the chest wall deformities, pectus excavatum and pectus carinatum. Pectus excavatum involves a sternal displacement causing a depression of the chest while pectus carinatum causes a protrusion of the chest. As costal cartilage is not a widely studied tissue, this leaves little knowledge into possible factors involved in the pathogenesis of pectus deformities. Costal cartilage in these deformities has been described as being weakened and may implicate proteoglycans which play an important role in …
Expansion Of Breast Cancer Stem Cells With Fibrous Scaffolds,
2013
University of South Carolina - Columbia
Expansion Of Breast Cancer Stem Cells With Fibrous Scaffolds, Sheng Feng, Pang-Kuo Lo, Shou Liu, Xinfeng Liu, Hexin Chen, Qian Wang
Faculty Publications
Cancer stem cells (CSCs) are hypothesized as tumor-initiating cells within tumors and main contributors of tumor growth, metastasis and recurrence. Mammary cancer cells, MCF-7 cells, were cultured on 3D polycaprolactone (PCL) fibrous scaffolds, showing an increased proportion of CSCs. The expression of stem cell markers, including OCT3/4 and SOX2, and breast CSC-specific markers, SOX4 and CD49f, was significantly upregulated, and the mammosphere-forming capability in cells cultured on PCL fibrous scaffolds increased. The fibrous scaffolds also induced the elongation of MCF-7 cells and extended cell proliferation. The increase of CSC properties after being cultured on fibrous scaffolds was further confirmed with …
Fuzzy Complex Formation Between The Intrinsically Disordered Prothymosin Α And The Kelch Domain Of Keap1 Involved In The Oxidative Stress Response.,
2013
Western University
Fuzzy Complex Formation Between The Intrinsically Disordered Prothymosin Α And The Kelch Domain Of Keap1 Involved In The Oxidative Stress Response., Halema Khan, Elio A Cino, Anne Brickenden, Jingsong Fan, Daiwen Yang, Wing-Yiu Choy
Biochemistry Publications
Kelch-like ECH-associated protein 1 (Keap1) is an inhibitor of nuclear factor erythroid 2-related factor 2 (Nrf2), a key transcription factor for cytoprotective gene activation in the oxidative stress response. Under unstressed conditions, Keap1 interacts with Nrf2 in the cytoplasm via its Kelch domain and suppresses the transcriptional activity of Nrf2. During oxidative stress, Nrf2 is released from Keap1 and is translocated into the nucleus, where it interacts with the small Maf protein to initiate gene transcription. Prothymosin α (ProTα), an intrinsically disordered protein, also interacts with the Kelch domain of Keap1 and mediates the import of Keap1 into the nucleus …
Facile Synthesis And Improved Pore Structure Characterization Of Mesoporous Γ-Alumina Catalyst Supports With Tunable Pore Size,
2013
Brigham Young University - Provo
Facile Synthesis And Improved Pore Structure Characterization Of Mesoporous Γ-Alumina Catalyst Supports With Tunable Pore Size, Baiyu Huang
Theses and Dissertations
Mesoporous γ-alumina is the most extensively used catalysts support in a wide range of catalytic processes. The usefulness of γ-alumina relies on its favorable combination of physical, textural, thermal, and chemical properties. Pore structure properties are among the most important properties, since high surface area and large pore volume enable higher loading of active catalytic phases, while design of pore size and pore size distribution is critical to optimize pore diffusional transport and product selectivity. In addition, accurate determination of surface area (SA), pore volume (PV) and pore size distribution (PSD) of porous supports, catalysts, and nanomaterials is vital to …
Studies On Dna Mismatch Repair Proteins As Biomarkers For Heriditary Non-Polyposis Colorectal Cancer,
2013
University of Arkansas Little Rock
Studies On Dna Mismatch Repair Proteins As Biomarkers For Heriditary Non-Polyposis Colorectal Cancer, Samar Hassen
Theses and Dissertations
Colorectal cancer is the second most leading cause of cancer related deaths in the Western countries. Hereditary Non-Polyposis Colorectal Cancer (HNPCC), also known as "Lynch Syndrome", is a genetic disorder that accounts for 5-10 % of all diagnosed colorectal cancers. It is caused by genetic defects in DNA mismatch repair proteins including MLH1 and MSH2. The aim of this PhD dissertation research was to develop a sensitive and reliable diagnostic method to screen patients with this syndrome before they develop colorectal cancer. The current methods to screen HNPCC patients are expensive, time consuming and insensitive. The new method would address …
The Role Of The Global Cryosphere On The Fate Of Organic Contaminants.,
2013
Villanova University
The Role Of The Global Cryosphere On The Fate Of Organic Contaminants., Amanda M. Grannas, Christian Bogdal, Kimberly J. Hageman, Frank Wania
Chemistry and Biochemistry Faculty Publications
The cryosphere is an important component of global organic contaminant cycles. Snow is an efficient scavenger of atmospheric organic pollutants while a seasonal snowpack, sea ice, glaciers and ice caps are contaminant reservoirs on time scales ranging from days to millennia. Important physical and chemical processes occurring in the various cryospheric compartments impact contaminant cycling and fate. A variety of interactions and feedbacks also occur within the cryospheric system, most of which are susceptible to perturbations due to climate change. In this article, we review the current state of knowledge regarding the transport and processing of organic contaminants in the …
Resorcinarene-Based Cavitands: From Structural Design And Synthesis To Separations Applications,
2013
Brigham Young University - Provo
Resorcinarene-Based Cavitands: From Structural Design And Synthesis To Separations Applications, Na Li
Theses and Dissertations
Resorcinarenes are cyclic tetramers that are synthesized by the condensation of resorcinol and various aldehydes. The upper and lower rims can be modified with substituents that provide specific selectivity and other chemical features. In this work, resorcinarene-based macrocyclic ligands with specific selectivities have been designed, synthesized and applied to chiral amine discrimination and transition metal ion separations.These resorcinarenes fall into two categories. In the first type, the upper rims of resorcinarenes were modified with amino acid groups, including chiral alanine groups. The lower rims were modified with --CH3, or --C11H23 groups. The structures were studied by nuclear magnetic resonance (NMR), …
Effect Of Anthraquinone Dyes On The Carbohydrate, Protein And Lipid Content In The Muscle Of Channa Punctatus And Cyprinus Carpio,
2013
Embry-Riddle Aeronautical University
Effect Of Anthraquinone Dyes On The Carbohydrate, Protein And Lipid Content In The Muscle Of Channa Punctatus And Cyprinus Carpio, Rajee Olaganathan, Jamila Patterson
Publications
Channa punctatus and Cyprinus carpio was exposed to sub lethal concentrations viz., 6.15 and 6.60 mg/l of vat blue 4 and vat green 1 respectively for a period of thirty days. The cumulative effect of these two dyes on the total carbohydrate, protein and lipid levels in the muscle of both the fishes were assayed on 7th, 18th and 30th day of exposure. The mean carbohydrate content of C. punctatus (both control and treated fish) collected on 18th and 30th day showed a significant difference (P < 0.01 to 0.04). In the case of control and treated C. carpio the data collected on 30th day showed significant variation (P < 0.04) in the carbohydrate content of the muscle. Student’s ‘t’ test analysis conducted on the protein content of C. punctatus during different occasions registered a significant decrease; in case of lipid content, except between the 1st and 30th day in all other cases the ‘t’ value is not significant. In case of C. carp protein and lipid content were observed to increase during the 7th day and thereafter a marked decrease was recorded on the 18th and 30th day of exposure. When the data was subjected to student’s ‘t’ test, both in protein and lipid, significant difference could not be recorded.
Bed Bugs Evolved Unique Adaptive Strategy To Resist Pyrethroid Insecticides,
2013
University of Kentucky
Bed Bugs Evolved Unique Adaptive Strategy To Resist Pyrethroid Insecticides, Fang Zhu, Hemant Gujar, Jennifer R. Gordon, Kenneth F. Haynes, Michael F. Potter, Subba R. Palli
Entomology Faculty Publications
Recent advances in genomic and post-genomic technologies have facilitated a genome-wide analysis of the insecticide resistance-associated genes in insects. Through bed bug, Cimex lectularius transcriptome analysis, we identified 14 molecular markers associated with pyrethroid resistance. Our studies revealed that most of the resistance-associated genes functioning in diverse mechanisms are expressed in the epidermal layer of the integument, which could prevent or slow down the toxin from reaching the target sites on nerve cells, where an additional layer of resistance (kdr) is possible. This strategy evolved in bed bugs is based on their unique morphological, physiological and behavioral characteristics …
Broad Vision: The Art & Science Of Looking,
2013
University of Westminster, London, United Kingdom
Broad Vision: The Art & Science Of Looking, Heather Barnett, John R. A. Smith
The Transdisciplinary STEAM+ Journal
Undergraduate students and academic staff from diverse disciplines in the arts and sciences investigated questions of mediated vision through a year-long interdisciplinary research project at the University of Westminster, London, United Kingdom. The Broad Vision project explored the perception and interpretation of microscopic worlds, and investigated the benefits and challenges of working across disciplinary divides in a university setting. This article describes the three-phase model for interdisciplinary learning and research developed through the project, providing a valuable case study for inquiry based art/science education.
A Single Point Mutation In The Listerial Betl Sigma(A)-Dependent Promoter Leads To Improved Osmo- And Chill-Tolerance And A Morphological Shift At Elevated Osmolarity,
2013
Alimentary Pharmabiotic Centre; University College Cork; Cork, Ireland; Department of Biological Sciences; Cork Institute of Technology; Cork, Ireland.
A Single Point Mutation In The Listerial Betl Sigma(A)-Dependent Promoter Leads To Improved Osmo- And Chill-Tolerance And A Morphological Shift At Elevated Osmolarity, Ronald F. Hoffman, Susan Mclernon, Audrey Feeney, Colin Hill, Roy D. Sleator
Department of Biological Sciences Publications
Betaine uptake in Listeria monocytogenes is mediated by three independent transport systems, the simplest of which in genetic terms is the secondary transporter BetL. Using a random mutagenesis approach, based on the E. coli XL1 Red mutator strain, we identified a single point mutation in a putative promoter region upstream of the BetL coding region which leads to a significant increase in betL transcript levels under osmo- and chill-stress conditions and a concomitant increase in stress tolerance. Furthermore, the mutation appears to counter the heretofore unreported “twisted” cell morphology observed for L. monocytogenes grown at elevated osmolarities in tryptone soy …
Two Biochemically Distinct Lipophosphoglycans From Leishmania Braziliensis And Leishmania Infantum Trigger Different Innate Immune Responses In Murine Macrophages,
2013
Fundação Oswaldo Cruz, Brazil
Two Biochemically Distinct Lipophosphoglycans From Leishmania Braziliensis And Leishmania Infantum Trigger Different Innate Immune Responses In Murine Macrophages, Izabela Coimbra Ibraim, Rafael Ramiro De Assis, Natália Lima Pessoa, Marco Antônio Campos, Maria Norma Melo, Salvatore Joseph Turco, Rodrigo Pedro Soares
Molecular and Cellular Biochemistry Faculty Publications
BACKGROUND: The dominant, cell surface lipophosphoglycan (LPG) of Leishmania is a multifunctional molecule involved in the interaction with vertebrate and invertebrate hosts. Although the role of LPG on infection has been extensively studied, it is not known if LPG interspecies variations contribute to the different immunopathologies of leishmaniases. To investigate the issue of interspecies polymorphisms, two Leishmania species from the New World that express structural variations of side chains of LPG repeat units were examined. In this context, the procyclic form of L. braziliensis LPG (strain M2903), is devoid of side chains, while the L. infantum LPG (strain BH46) has …
