Aquaculture and Fisheries Commons^™

Fishing For Ecosystem Services, Kevin L. Pope, Mark A. Pegg, Nicholas W. Cole, Stephen F. Siddons, Alexis D. Fedele, Brian S. Harmon, Ryan L. Ruskamp, Dylan R. Turner, Caleb C. Uerling

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Ecosystems are commonly exploited and manipulated to maximize certain human benefits. Such changes can degrade systems, leading to cascading negative effects that may be initially undetected, yet ultimately result in a reduction, or complete loss, of certain valuable ecosystem services. Ecosystembased management is intended to maintain ecosystem quality and minimize the risk of irreversible change to natural assemblages of species and to ecosystem processes while obtaining and maintaining long-term socioeconomic benefits. We discuss policy decisions in fishery management related to commonly manipulated environments with a focus on influences to ecosystem services. By focusing on broader scales, managing for ecosystem services, …

Genetic Correlates Of Individual Differences In Sleep Behavior Of Free-Living Great Tits (Parus Major), Erica F. Stuber, Christine Baumgartner, Niels J. Dingemanse, Bart Kempenaers, Jakob C. Mueller

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Within populations, free-living birds display considerable variation in observable sleep behaviors, reflecting dynamic interactions between individuals and their environment. Genes are expected to contribute to repeatable between-individual differences in sleep behaviors, which may be associated with individual fitness. We identified and genotyped polymorphisms in nine candidate genes for sleep, and measured five repeatable sleep behaviors in free-living great tits (Parus major), partly replicating a previous study in blue tits (Cyanistes caeruleus). Microsatellites in the CLOCK and NPAS2 clock genes exhibited an association with sleep duration relative to night length, and morning latency to exit the nest …

Body Size Distributions Signal A Regime Shift In A Lake Ecosystem, Trisha L. Spanbauer, Craig R. Allen, David G. Angeler, Tarsha Eason, Sherilyn C. Fritz, Ahjond S. Garmestani, Kirsty L. Nash, Jeffery R. Stone, Craig A. Stow, Shana M. Sundstrom

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Communities of organisms, from mammals to microorganisms, have discontinuous distributions of body size. This pattern of size structuring is a conservative trait of community organization and is a product of processes that occur at multiple spatial and temporal scales. In this study, we assessed whether body size patterns serve as an indicator of a threshold between alternative regimes. Over the past 7000 years, the biological communities of Foy Lake (Montana, USA) have undergone a major regime shift owing to climate change. We used a palaeoecological record of diatom communities to estimate diatom sizes, and then analysed the discontinuous distribution of …

Factors Influencing Recruitment Of Walleye And White Bass To Three Distinct Early Ontogenetic Stages, Jason A. Deboer, Kevin L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Determining the factors that influence recruitment to sequential ontogenetic stages is critical for understanding recruitment dynamics of fish and for effective management of sportfish, particularly in dynamic and unpredictable environments. We sampled walleye (Sander vitreus) and white bass (Morone chrysops) at 3 ontogenetic stages (age 0 during spring: ‘age-0 larval’; age 0 during autumn: ‘age-0 juvenile’; and age 1 during autumn: ‘age-1 juvenile’) from 3 reservoirs. We developed multiple linear regression models to describe factors influencing age-0 larval, age-0 juvenile and age-1 juvenile walleye and white bass abundance indices. Our models explained 40–80% (68 ± 9%; …

Adaptive Management For Ecosystem Services, Hannah E. Birgé, Craig R. Allen, Ahjond S. Garmestani, Kevin L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Management of natural resources for the production of ecosystem services, which are vital for human well-being, is necessary even when there is uncertainty regarding system response to management action. This uncertainty is the result of incomplete controllability, complex internal feedbacks, and nonlinearity that often interferes with desired management outcomes, and insufficient understanding of nature and people. Adaptive management was developed to reduce such uncertainty. We present a framework for the application of adaptive management for ecosystem services that explicitly accounts for cross-scale tradeoffs in the production of ecosystem services. Our framework focuses on identifying key spatiotemporal scales (plot, patch, ecosystem, …

Landscape Context Influences Nest Survival In A Midwest Grassland, Victoria L. Simonsen, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Although the management and restoration of habitat is the key method to conserve species of interest, local habitat management often fails to elicit desired responses in populations. Landscape features beyond the local habitat scale affect the population dynamics of ring-necked pheasants (Phasianus colchicus), but the mechanism behind this response is unknown. One possibility is that nest survival, which is primarily reduced by nest predation, is regulating pheasant responses to the landscape. We investigated the extent to which land use affected nest survival by studying 202 artificial nests on 12 Conservation Reserve Program (CRP) fields in Nebraska, USA with …

Management Applications Of Discontinuity Theory, David G. Angeler, Craig R. Allen, Chris Barichievy, Tarsha Eason, Ahjond S. Garmestani, Nicholas A.J. Graham, Dean Granholm, Lance H. Gunderson, Melinda Knutson, Kristy L. Nash, R. John Nelson, Magnus Nystrom, Trisha L. Spanbauer, Craig A. Stow, Shana M. Sundstrom

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

1. Human impacts on the environment are multifaceted and can occur across distinct spatiotemporal scales. Ecological responses to environmental change are therefore difficult to predict, and entail large degrees of uncertainty. Such uncertainty requires robust tools for management to sustain ecosystem goods and services and maintain resilient ecosystems.

2. We propose an approach based on discontinuity theory that accounts for patterns and processes at distinct spatial and temporal scales, an inherent property of ecological systems. Discontinuity theory has not been applied in natural resource management and could therefore improve ecosystem management because it explicitly accounts for ecological complexity.

3. Synthesis …

Quantifying Spatial Resilience, Craig R. Allen, David G. Angeler, Graeme S. Cumming, Carl Folke, Dirac L. Twidwell, Daniel R. Uden

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

1. Anthropogenic stressors affect the ecosystems upon which humanity relies. In some cases when resilience is exceeded, relatively small linear changes in stressors can cause relatively abrupt and nonlinear changes in ecosystems.

2. Ecological regime shifts occur when resilience is exceeded and ecosystems enter a new local equilibrium that differs in its structure and function from the previous state. Ecological resilience, the amount of disturbance that a system can withstand before it shifts into an alternative stability domain, is an important framework for understanding and managing ecological systems subject to collapse and reorganization.

3. Recently, interest in the influence of …

Biological Invasions, Ecological Resilience And Adaptive Governance, Brian C. Chaffin, Ahjond S. Garmestani, David G. Angeler, Dustin L. Herrmann, Craig A. Stow, Magnus Nystrom, Jan Sendzimir, Matthew E. Hopton, Jurek Kolasa, Craig R. Allen

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

In a world of increasing interconnections in global trade as well as rapid change in climate and land cover, the accelerating introduction and spread of invasive species is a critical concern due to associated negative social and ecological impacts, both real and perceived. Much of the societal response to invasive species to date has been associated with negative economic consequences of invasions. This response has shaped a war-like approach to addressing invasions, one with an agenda of eradications and intense ecological restoration efforts towards prior or more desirable ecological regimes. This trajectory often ignores the concept of ecological resilience and …

Avoiding Decline: Fostering Resilience And Sustainability In Midsize Cities, Craig R. Allen, Hannah E. Birge, Shannon L. Bartelt-Hunt, Rebecca Bevans, Jessica L. Burnett, Barbara A. Cosens, Ximing Cai, Ahjond S. Garmestani, Igor Linkov, Elizabeth A. Scott, Mark D. Solomon, Daniel R. Uden

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Eighty-five percent of United States citizens live in urban areas. However, research surrounding the resilience and sustainability of complex urban systems focuses largely on coastal megacities (>1 million people). Midsize cities differ from their larger counterparts due to tight urban-rural feedbacks with their immediate natural environments that result from heavy reliance and close management of local ecosystem services. They also may be less path-dependent than larger cities due to shorter average connection length among system components, contributing to higher responsiveness among social, infrastructural, and ecological feedbacks. These distinct midsize city features call for a framework that organizes information and …

A Genetically Distinct Hybrid Zone Occurs For Two Globally Invasive Mosquito Fish Species With Striking Phenotypic Resemblance, Rebecca J. Wilk, Lisa Horth

Biological Sciences Faculty Publications

Hybrid zones allow for the investigation of incipient speciation and related evolutionary processes of selection, gene flow, and migration. Interspecific dynamics, like competition, can impact the size, shape, and directional movement of species in hybrid zones. Hybrid zones contribute to a paradox for the biological species concept because interbreeding between species occurs while parental forms remain distinct. A long‐standing zone of intergradation or introgression exists for eastern and western mosquito fish (Gambusia holbrooki and G. affinis) around Mobile Bay, AL. The region has been studied episodically, over decades, making it perfect for addressing temporal dynamics and for providing …

Zooplanktonic Community Dynamics Of The Minnesota River With An Ichthyoplankton Gear Comparison, Nathaniel Lederman

All Graduate Theses, Dissertations, and Other Capstone Projects

The Minnesota River, like many large rivers, has been functionally altered by human activities and climate change. The Minnesota Pollution Control Agency has designated 271 kilometers (50.3%) of the 539 kilometer Minnesota River as “biologically impaired.” However, assessing biological communities in large rivers is often difficult and limited to examination of upper trophic levels (e.g., piscivorous fishes). Few studies examined zooplanktonic communities, largely due to difficulties associated with sampling. Because of the need to improve assessment strategies for biological impairments in the Minnesota River, the zooplanktonic community, including crustaceous zooplankton, rotifers, macroinvertebrates, and ichthyoplankton was evaluated within an impaired and …

The Contribution Of Missouri River Reservoir Side-Channel And Floodplain Habitats To Mainstem Fish Populations: The Effects Of Losing Connectivity Between Hipple Lake And Lake Sharpe, William Joseph Radigan

Electronic Theses and Dissertations

Catastrophic flooding of the Missouri River in 2011 has had lasting effects on floodplain habitats (i.e. floodplain lakes) and side-channel habitats (e.g. canals, side-channel embayments, stilling basins, and tributaries) in Lake Sharpe, SD. Floodplain and side-channel habitats are rare habitat in Lake Sharpe, a mainstem Missouri River reservoir, and are thought to be crucial habitat for prey and sport fish. Hipple Lake, the only warm-water floodplain embayment in Lake Sharpe, is in danger of losing connectivity to the reservoir because of sedimentation resulting from the 2011 flood. To evaluate Hipple Lake’s natal and adult contribution to Lake Sharpe’s fishery, otolith …

Effects Of Hydrology On The Growth And Recruitment Of Stream Fish In The Eastern Broadleaf Province Of Minnesota, Eric J. Krumm

All Graduate Theses, Dissertations, and Other Capstone Projects

Agricultural practices and urban development have altered streamflows within the Eastern Broadleaf Province of Minnesota. Stream-flow alteration can produce significant changes in native freshwater communities. Therefore, knowledge of streamflow effects on representative freshwater populations and communities within the province are needed to maintain ecological integrity. Fish community and population dynamics often display predictable responses to flow regimes, which can make fishes model organisms for examining flow-ecology relationships.

In lotic systems, annual variation in streamflow can influence the annual growth and recruitment of fishes. Understanding the growth and recruitment of fish populations is essential for management and conservation efforts. Growth can …

A Simple Method To Reduce Interpretation Error Of Ages Estimated From Otoliths, Bradley J. Smith, Daniel J. Dembkowski, Daniel A. James, Melissa R. Wuellner

Natural Resource Management Faculty Publications

We designed and tested a novel otolith viewing apparatus termed the otolith illumination device (OID) to ascertain if its use would result in a reduction of interpretation error as determined by increased precision of age estimates obtained from otoliths of walleye Sander vitreus and smallmouth bass Micropterus dolomieu. Clarity of annuli on otolith sections viewed with the OID was generally greater than clarity of annuli on sections viewed with an alternative method. OID-based age estimates were equally as, and in some instance more precise than ages estimated using the alternative method. Additionally, no systematic differences in coefficients of variation …

Age, Growth And Natural Mortality Of Blackfin Snapper Lutjanus Buccanella From The Southeastern United States And U. S. Caribbean, Michael L. Burton, Jennifer C. Potts, Daniel R. Carr

Gulf and Caribbean Research

We determined ages of Blackfin Snapper (Lutjanus buccanella Cuvier 1828; n = 622) collected from the southeastern United States coast and U.S. Caribbean from 1979–2015 using sectioned sagittal otoliths. Opaque zones were determined to be annular, forming March – July (peaking in April–June). Blackfin Snapper ranged from 1–27 years and from 180–609 mm total length (TL). Body size relationships for Blackfin Snapper were: TL = 1.09 FL + 0.81 (n = 203, r2 = 0.99); FL = 0.91 TL + 3.38 (n = 203, r2 = 0.99); TL = 1.23 SL + 14.27 (n = 83, r2 = 0.97); FL …

Seasonal Microhabitat Use Of Young-Of-The-Year Bull Trout, Salvelinus Confluentus, In A Drought Year, Ashton Brook Bunce

All Master's Theses

This study examined the microhabitat use of young-of-the-year (YOY) bull trout, Salvelinus confluentus, throughout the summer and fall of 2015 in Gold Creek, a third order Cascade Mountain stream near Snoqualmie Pass, WA. It is crucial to understand YOY habitat requirements, as this life stage is highly vulnerable to fluctuations in streamflow and various ecological risks associated with their dispersal. Previous research has demonstrated that YOY salmonids often occupy stream margins where they are sheltered from these kinds of threats. However, in the face of climate change, Pacific Northwest streams are more susceptible to decreased summer streamflows and elevated, irregular …

River Report. State Of The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, Contaminants, 2016, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Gerry Pinto, Nisse Goldberg, Radha Pyati, Peter Bacopoulos, Anthony Ouellette, Gretchen Bielmyer-Fraser, An-Phong Le, Ray Oldakowski

State of the River Report

No abstract provided.

A Highly Sensitive Underwater Video System For Use In Turbid Aquaculture Ponds, Chin-Chang Hung, Shih-Chieh Tsao, Kuo-Hao Huang, Jia-Pu Jang, Hsu-Kuang Chang, Fred C. Dobbs

OES Faculty Publications

The turbid, low-light waters characteristic of aquaculture ponds have made it difficult or impossible for previous video cameras to provide clear imagery of the ponds' benthic habitat. We developed a highly sensitive, underwater video system (UVS) for this particular application and tested it in shrimp ponds having turbidities typical of those in southern Taiwan. The system's high-quality video stream and images, together with its camera capacity (up to nine cameras), permit in situ observations of shrimp feeding behavior, shrimp size and internal anatomy, and organic matter residues on pond sediments. The UVS can operate continuously and be focused remotely, a …

Baseline Monitoring And Characterization Of Rocky Intertidal Fish Communities In Northern California, Kevin D. Hinterman

Cal Poly Humboldt theses and projects

A network of new Marine Protected Areas (MPAs) has been established in northern California, covering 137 square miles of coastline, with the goal of maintaining commercially and recreationally important species and to preserve biodiversity. This is the first study in California to create a biodiversity and phylogenetic baseline of rocky intertidal fish communities within MPAs and nearby reference sites. Diversity, abundance, and size structure of intertidal fishes were compared among seven sites from Fort Bragg to Crescent City, CA during the summers and winters of 2014 and 2015. A total of 34 species were collected throughout sampling, just three less …