Physical Sciences and Mathematics Commons^™

Large Scale Structure As A Probe Of Gravitational Slip, Scott F. Daniel, Robert R. Caldwell, Asantha Cooray, Alessandro Melchiorri

Dartmouth Scholarship

A new time-dependent, scale-independent parameter, ϖ, is employed in a phenomenological model of the deviation from general relativity in which the Newtonian and longitudinal gravitational potentials slip apart on cosmological scales as dark energy, assumed to be arising from a new theory of gravitation, appears to dominate the Universe. A comparison is presented between ϖ and other parametrized post-Friedmannian models in the literature. The effect of ϖ on the cosmic microwave background anisotropy spectrum, the growth of large-scale structure, the galaxy weak-lensing correlation function, and cross correlations of cosmic microwave background anisotropy with galaxy clustering are illustrated. Cosmological models with …

Simulation And Visualization Of Environments With Multidimensional Time, Luther A. Tychonievich

Theses and Dissertations

This work introduces the notion of computational hypertime, or the simulation and visualization of hypothetical environments possessing multidimensional time. An overview of hypertime is provided,including an intuitive visualization paradigm and a discussion of the failure of common simulation techniques when extended to include multidimensional time. A condition for differential equations describing hypertime motion to be amenable to standard time-iterative simulation techniques is provided,but is not satisfied by any known model of physics. An alternate simulation algorithm involving iterative refinement of entire equations of motion is presented,with an example implementation to solve elastic collisions in hypertime. An artificial intelligence algorithm for …

Application Of Computer Simulation Modeling To Evaluate Business Continuity Plans, Jose Francisco Molina Garcia Plaza

CCAC Theses and Dissertations

Business continuity plans (BCP) help organizations plan for and withstand the occurrence of unexpected events that interrupt the normal operation of business. Managers typically develop several alternate plans to minimize the business impact of unexpected events. The problem for decision makers is that comparative evaluation of BCP is typically done using subjective judgments.

This research uses a case study approach focusing on a single organization and a single business continuity application to propose the use of computer simulation as a tool for managers to identify and evaluate different BCP prior to committing resources. In the context of an insurance firm, …

Space-Time Multiresolution Approach To Atomistic Visualization, Dipesh Bhattarai

LSU Doctoral Dissertations

Time-varying three-dimensional positional atomistic data are rich in spatial and temporal information. The problem is to understand them. This work offers multiple approaches that enable such understanding. An interactive atomistic visualization system is developed integrating complex analyses with visualization to present the data on space-time multiresolution basis facilitating the information extraction and generate understanding. This work also shows the usefulness of such an integrated approach. The information obtained from the analyses represents the system at multiple length and time scales. Radial distribution function (RDF) provides a complete average spatial map of the distribution of the atoms in the system which …

A Middle-Ware Level Client Cache For A High Performance Computing I/O Simulator, Michael Bassily

All Theses

This thesis describes the design and run time analysis of the system level middle-ware cache for Hecios. Hecios is a high performance cluster I/O simulator. With Hecios, we provide a simulation environment that accurately captures the performance characteristics of all the components in a clusterwide parallel file system. Hecios was specifically modeled after PVFS2. It was designed to be extensible and to easily allow for various component modules to be easily replaced by those that model other system types. Built around the OMNeT++ simulation package, Hecios' inner-cluster communication module is easily adaptable to any TCP/IP based protocol and all standard …

Evaluating Opportunistic Routing Protocols With Large Realistic Contact Traces, Libo Song, David Kotz

Dartmouth Scholarship

Traditional mobile ad hoc network (MANET) routing protocols assume that contemporaneous end-to-end communication paths exist between data senders and receivers. In some mobile ad hoc networks with a sparse node population, an end-to-end communication path may break frequently or may not exist at any time. Many routing protocols have been proposed in the literature to address the problem, but few were evaluated in a realistic “opportunistic” network setting. We use simulation and contact traces (derived from logs in a production network) to evaluate and compare five existing protocols: direct-delivery, epidemic, random, PRoPHET, and Link-State, as well as our own proposed …

Bioanalyze: A Tool For The Simulation And Analysis Of Biological Systems, James Norman

All Theses

Scientists have turned to a more systemic approach to biology in order to fully understand the complex functionality of living organisms. Biologist and Geneticist have compiled an impressive amount of experimental data for a multitude of biological systems. Modeling and simulation of these systems has become a prominent tool in the field of Systems Biology. In this paper we present a review of General Systems Theory, Systems Biology, and introduce BioAnalyze. BioAnalyze is a web application designed to simulate, and analyze, the functional dynamics of biological systems.

An Adaptive Bayesian Approach To Bernoulli-Response Clinical Trials, Andrew W. Stacey

Theses and Dissertations

Traditional clinical trials have been inefficient in their methods of dose finding and dose allocation. In this paper a four-parameter logistic equation is used to model the outcome of Bernoulli-response clinical trials. A Bayesian adaptive design is used to fit the logistic equation to the dose-response curve of Phase II and Phase III clinical trials. Because of inherent restrictions in the logistic model, symmetric candidate densities cannot be used, thereby creating asymmetric jumping rules inside the Markov chain Monte Carlo algorithm. An order restricted Metropolis-Hastings algorithm is implemented to account for these limitations. Modeling clinical trials in a Bayesian framework …

A Hybrid Of Plot-Based And Character-Based Interactive Storytelling, Yundong Cai, Chunyan Miao, Ah-Hwee Tan, Zhiqi Shen

Research Collection School Of Computing and Information Systems

Interactive storytelling in the virtual environment attracts a lot of research interests in recent years. Story plot and character are two most important elements of a story. Based on these two elements, currently there are two research directions: plot-based and character-based interactive storytelling. However, plot-based approach lacks the refinement of character behaviors as character-based approach. On the other side, character-based approach does not follow a well organized story plot so that the moral of the story might be distorted. Therefore, there is a need to develop an integrated framework to achieve the balance between conveying story moral and enhancing the …

Adaptive Treatment Of Van Der Waals Interactions In Empirical Bond-Order Potentials With Application To Junction Formation In Carbon Nanotubes, Aibing Liu

All Dissertations

Molecular dynamics (MD) simulation of reactive condensed-phase hydrocarbon systems is a challenging research area. The AIREBO potential is particularly useful in this area because it can simulate bond breaking and bond forming during chemical reactions. It also includes non-bonded interactions for systems with significant intermolecular interactions.

The first part of this dissertation describes a method to adaptively incorporate van der Waals interaction of carbon atoms into the AIREBO force field. In bond-order potentials, the covalent bonding interactions adapt to the local chemical environment, allowing bonded interactions to change in response to local chemical changes.
Non-bonded interactions should adjust to their …

A Simulation-Based Approach For Evaluating Gene Expression Analyses, Carly Ruth Pendleton

Theses and Dissertations

Microarrays enable biologists to measure differences in gene expression in thousands of genes simultaneously. The data produced by microarrays present a statistical challenge, one which has been met both by new modifications of existing methods and by completely new approaches. One of the difficulties with a new approach to microarray analysis is validating the method's power and sensitivity. A simulation study could provide such validation by simulating gene expression data and investigating the method's response to changes in the data; however, due to the complex dependencies and interactions found in gene expression data, such a simulation would be complicated and …

A Comparison Of Individual-Based And Matrix Projection Models To Applied To Fish Population And Community Dynamics, Shaye Ellen Sable

LSU Doctoral Dissertations

Matrix projection models and individual-based models (IBM) are commonly used for the analysis and management of fish populations. Matrix models break down the population into age or stage classes, while IBMs track individuals. I perform a series of quantitative comparisons between the predictions of the two modeling approaches using the IBM as the standard of comparison to demonstrate when individual variation, species interactions, and spatial heterogeneity adversely affect matrix model performance. I first evaluate the matrix approach for predicting yellow perch population responses when perch are involved in size-specific predator-prey interactions with walleye. I created density-dependent and stochastic age-structured and …

Small-Scale Turbulence In A Closed-Field-Line Geometry, Paolo Ricci, B. N. Rogers, W. Dorland

Dartmouth Scholarship

Plasma turbulence due to small-scale entropy modes is studied with gyrokinetic simulations in a simple closed-field-line geometry, the Z pinch, in low-β parameter regimes that are stable to ideal interchange modes. We find an enormous variation in the nonlinear dynamics and particle transport as a function of two main parameters, the density gradient and the plasma collisionality. This variation is explained in part by the damping and stability properties of spontaneously formed zonal flows in the system. As in toroidal systems, the zonal flows can lead to a strong nonlinear suppression of transport below a critical gradient that is determined …

Robust Control Techniques Enabling Duty Cycle Experiments Utilizing A 6-Dof Crewstation Motion Base, A Full Scale Combat Hybrid Electric Power System, And Long Distance Internet Communications, Marc Compere, Jarrett Goodell, Miguel Simon, Wilford Smith, Mark Brudnak

Publications

The RemoteLink effort supports the U.S. Army's objective for developing and fielding next generation hybrid-electric combat vehicles. It is a distributed soldierin- the-Ioop and hardware-in-the-Ioop environment with a 6-DOF motion base for operator realism, a full-scale combat hybrid electric power system, and an operational context provided by OneSAF. The driver/gunner crewstations rest on one of two 6-DOF motion bases at the U.S. Army TARDEC Simulation Laboratory (TSL). The hybrid power system is located 2,450 miles away at the TARDEC Power and Energy System Integration Laboratory (P&E SIL). The primary technical challenge in the RemoteLink is to operate both laboratories together …

Tabu Search For Optimization Of Military Supply Distribution, Ben Weber, Brett Bojduj, Jens G. Pohl

Collaborative Agent Design (CAD) Research Center

The dynamic and non-hierarchical nature of the military domain presents a challenge for traditional supply chain optimization. Flow networks and simulation techniques have been applied to the military distribution problem, but are unable to provide time-definite delivery to customers. Recently, optimization approaches have been independently applied towards strategic and operational levels of planning. However, decomposing military distribution into separate problems forces optimization techniques to utilize imprecise data. The size of the military distribution problem has prevented optimization techniques from providing end-to-end planning capabilities. This paper presents a Tabu Search algorithm for simultaneously solving strategic and operational levels of planning. The …

Choosing Smoothing Parameters For Exponential Smoothing: Minimizing Sums Of Squared Versus Sums Of Absolute Errors, Terry E. Dielman

Journal of Modern Applied Statistical Methods

When choosing smoothing parameters in exponential smoothing, the choice can be made by either minimizing the sum of squared one-step-ahead forecast errors or minimizing the sum of the absolute onestep- ahead forecast errors. In this article, the resulting forecast accuracy is used to compare these two options.

Combining Information From Two Surveys To Estimate County-Level Prevalence Rates Of Cancer Risk Factors And Screening, Trivellore E. Raghuanthan, Dawei Xie, Nathaniel Schenker, Van Parsons, William W. Davis, Kevin W. Dodd, Eric J. Feuer

The University of Michigan Department of Biostatistics Working Paper Series

Cancer surveillance requires estimates of the prevalence of cancer risk factors and screening for small areas such as counties. Two popular data sources are the Behavioral Risk Factor Surveillance System (BRFSS), a telephone survey conducted by state agencies, and the National Health Interview Survey (NHIS), an area probability sample survey conducted through face-to-face interviews. Both data sources have advantages and disadvantages. The BRFSS is a larger survey, and almost every county is included in the survey; but it has lower response rates as is typical with telephone surveys, and it does not include subjects who live in households with no …

Task Scheduling And Simulation, Martin Lee Mayne

Undergraduate Honors Capstone Projects

Scheduling is a problem that is not only common computer science, but which also comes up in a variety of real world situations. Whether multi-threading computer processes, scheduling airport traffic, optimizing assembly line production and manufacturing, or ensuring that enough employees are on the floor at a given time, scheduling is important for increasing efficiency, reducing costs, optimizing production, and meeting deadlines. Scheduling has been used throughout history and has increased in efficacy through the years. Modem computerized scheduling techniques are typically much better than human calculations and often produce surprising insights and results which would have been otherwise passed …

Modeling And Simulation Of Value -At -Risk In The Financial Market Area, Xiangyin Zheng

Doctoral Dissertations

Value-at-Risk (VaR) is a statistical approach to measure market risk. It is widely used by banks, securities firms, commodity and energy merchants, and other trading organizations. The main focus of this research is measuring and analyzing market risk by modeling and simulation of Value-at-Risk for portfolios in the financial market area. The objectives are (1) predicting possible future loss for a financial portfolio from VaR measurement, and (2) identifying how the distributions of the risk factors affect the distribution of the portfolio. Results from (1) and (2) provide valuable information for portfolio optimization and risk management.

The model systems chosen …

A Selective Approach To Bandwidth Overbooking, Feng Huang

Theses and Dissertations

Overbooking is a technique used by network providers to increase bandwidth utilization. If the overbooking factor is chosen appropriately, additional virtual circuits can be admitted without degrading quality of service for existing customers. Most existing implementations use a single factor to accept a linear fraction of traffic requests. High values of this factor may cause the degradation of quality of service whereas low overbooking factors will result in underutilization of bandwidth. Network providers often select overbooking factors based only on aggregate average virtual circuit utilization. This paper proposes a selective overbooking scheme based on trunk size and usage profile. Experiments …

Asynchronous Random Boolean Network Model With Variable Number Of Parents Based On Elementary Cellular Automata Rule 126, Mihaela Teodora Matache

Mathematics Faculty Publications

A Boolean network with N nodes, each node’s state at time t being determined by a certain number of parent nodes, which can vary from one node to another is considered. This is a generalization of previous results obtained for a constant number of parent nodes, by Matache and Heidel in Asynchronous random Boolean network model based on elementary cellular automata rule 126, Phys. Rev. E 71, 026232, 2005. The nodes, with randomly assigned neighborhoods, are updated based on various asynchronous schemes. The Boolean rule is a generalization of rule 126 of elementary cellular automata, and is assumed to be …

A Labview-Based Virtual Instrument For Engineering Education: A Numerical Fourier Transform Tool, Levent Sevgi̇, Çağatay Uluişik

Turkish Journal of Electrical Engineering and Computer Sciences

Engineering is based on practice. The minima of this practice should be given during the university education. This has become more and more comprehensive and expensive parallel to high-technology devices developed and presented to societies. Computers, microprocessor-based devices, programmable systems on Chip (PSoC), etc., make engineering education not only very complex but interdisciplinary as well. Building undergraduate labs has become more and more expensive if only physical experimentation and hands-on training are targeted. On the other hand, simple, comparatively much cheaper software may turn a regular personal computer (PC) into a virtual lab. The key question therefore is, to establish …

A Comparison For Longitudinal Data Missing Due To Truncation, Rong Liu

Theses and Dissertations

Many longitudinal clinical studies suffer from patient dropout. Often the dropout is nonignorable and the missing mechanism needs to be incorporated in the analysis. The methods handling missing data make various assumptions about the missing mechanism, and their utility in practice depends on whether these assumptions apply in a specific application. Ramakrishnan and Wang (2005) proposed a method (MDT) to handle nonignorable missing data, where missing is due to the observations exceeding an unobserved threshold. Assuming that the observations arise from a truncated normal distribution, they suggested an EM algorithm to simplify the estimation.In this dissertation the EM algorithm is …

Scheduling Policies For Disks And Disk Arrays, Chang Liu

Dissertations

Recent rapid advances of magnetic recording technology have enabled substantial increases in disk capacity. There has been less than 10% improvement annually in the random access time to small data blocks on the disk. Such accesses are very common in OLTP applications, which tend to have stringent response time requirements. Scheduling of disk requests is intended to improve their response time, reduce disk service time, and increase disk access bandwidth with respect to the default FCFS scheduling policy.

Shortest Access Time First policy has been shown to outperform other classical disk scheduling policies in numerous studies. Before verifying this conclusion, …

Hyperspectral Simulation And Recovery Of Submerged Targets In Turbid Waters, Charles R. Bostater

Ocean Engineering and Marine Sciences Faculty Publications

Modeled hyperspectral reflectance signatures just above the water surface are obtained from radiative transfer models to create synthetic images of targets below the water surface. Images are displayed as 24 bit RGB images of the water surface using selected channels. Example model outputs are presented in this paper for a hyperspectral Monte Carlo and a hyperspectral layered analytical iterative model of radiative transport within turbid shallow water types. Images at the selected wavelengths or channels centered at 490, 530 and 680 nm suggests the two models provide quite similar results when displayed as RGB images. The techniques are demonstrated to …

Jmasm16: Pseudo-Random Number Generation In R For Some Univariate Distributions, Hakan Demirtas

Journal of Modern Applied Statistical Methods

An increasing number of practitioners and applied researchers started using the R programming system in recent years for their computing and data analysis needs. As far as pseudo-random number generation is concerned, the built-in generator in R does not contain some important univariate distributions. In this article, complementary R routines that could potentially be useful for simulation and computation purposes are provided.

Simulation Study Of Estimation And Inference In Factor Analysis: Normal And Non-Normal Noise Distributions, Ping Zhang

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Objective: To study the estimation and inference m factor analyses when the data have normal or non-normal noise distributions.

Methods: Population data were created in package R with a specified number of factors, factor structure and observable variables with known loadings. Then, repeated simple random samples (SRS's) were taken from the population, independently. The maximum likelihood method with varimax rotation was used to perform factor analysis and inference on each sampled dataset. Factor loadings were estimated to determine if the estimation of the loadings was (approximately) unbiased and/or efficient for each specified population and chi-square x2-statistics were obtained to test …

Selectron Mass Reconstruction And The Resolution Of The Linear Collider Detector, Sharon J. Gerbode, Heath Holguin, Troy Lau, Paul Mooser, Adam Pearlstein, Joe Rose, Bruce Schumm

All HMC Faculty Publications and Research

We have used ISAJET and the JAS LCD fast simulation to explore the precision of Snowmass Point SPS1a selectron mass reconstruction for the Silicon Detector concept. Simulating collisions at E_cm = 1 TeV, we have found that most of the information constraining the selectron mass is carried in the forward (|cos(theta)| > 0.8) region. We have also found that, for a beam energy spread of 1% (conventional RF design), detector resolution limitations compromise the selectron mass reconstruction only in the forward region. However, for a beam energy spread of less than 0.2% (superconducting RF design), the detector resolution compromises the selectron …

Robust Control Techniques For State Tracking In The Presence Of Variable Time Delays, Jarrett Goodell, Marc Compere, Miguel Simon, Wilford Smith, Ronnie Wright, Mark Brudnak

Publications

In this paper, a distributed driver-in-the-Ioop and hardware-in-the-Ioop simulator is described with a driver on a motion simulator at the U.S. Army TARDEC Ground Vehicle Simulation Laboratory (GVSL). Realistic power system response is achieved by linking the driver in the GVSL with a full-sized hybrid electric power system located 2,450 miles away at the TARDEC Power and Energy Systems Integration Laboratory (P&E SIL), which is developed and maintained by Science Applications International Corporation (SAIC). The goal is to close the loop between the GVSL and P&E SIL over the Internet to provide a realistic driving experience in addition to realistic …

Monte Carlo Simulation Of Hole Transport And Terahertz Amplification In Multilayer Delta Doped Semiconductor Structures, Maxim Dolguikh

Electronic Theses and Dissertations

Monte Carlo method for the simulation of hole dynamics in degenerate valence subbands of cubic semiconductors is developed. All possible intra- and inter-subband scattering rates are theoretically calculated for Ge, Si, and GaAs. A far-infrared laser concept based on intersubband transitions of holes in p-type periodically delta-doped semiconductor films is studied using numerical Monte-Carlo simulation of hot hole dynamics. The considered device consists of monocrystalline pure Ge layers periodically interleaved with delta-doped layers and operates with vertical or in-plane hole transport in the presence of a perpendicular in-plane magnetic field. Inversion population on intersubband transitions arises due to light hole …