Botany Commons^™

2009 Wildflower Of The Year: Skunk Cabbage, Symplocarpus Foetidus, W. John Hayden

Biology Faculty Publications

Skunk cabbage is a coarse herbaceous plant. The stem consists of a stout rhizome oriented vertically in the soil. Leaves and flowers arise from the tip of the rhizome which is often not visible, resulting in the appearance of leaves and flowers arising directly from the swampy mires where these plants grow. Flowers appear during the winter, long before the leaves. The flowers are minute, clustered into a ball-like group (spadix) almost entirely enclosed by a fleshy, hood-like, spathe. The spathe ranges from 8 to 15 cm in height, is more or less pear-shaped, widest near the bottom, and tapers …

Skunk Cabbage Flowers: The Heat Is On, W. John Hayden

Biology Faculty Publications

It is a remarkable sight, as striking as it is unexpected: January skunk cabbages emerging from the frozen mires they call home, melting their way through snow and ice. It seems so improbable because in everyday experience plants exist at equilibrium with ambient temperatures. Leave an apple on the front seat of your car in summer, it gets hot; examine your tomato plants on that first frosty morning in autumn, and they are permeated with ice crystals. People, mammals and birds are inherently warm, and pretty much nothing else is. Except, of course, for the exceptions, of which skunk cabbage …

Time And Temperature Requirements For Effective Removal Of High Molecular Weight Rna From Winter Wheat Genomic Dna With Licl, Benjamin Meyerink, Ryan Geraets

The Journal of Undergraduate Research

Numerous protocols are available for the isolation of plant genomic DNA. Often times, these protocols utilize a wide variety of solutions. The primary purpose of this project was to examine the use of LiCl for the removal of RNA contaminants within genomic DNA samples and its dependency on incubation time and temperature. Our results indicate that LiCl is sufficient for the removal of high molecular weight RNA contaminants from genomic DNA. In addition, our results illustrate varying incubation times with LiCl yield minimal differences in the recovery of genomic DNA and the removal of RNA contaminants. Alternatively, different incubation temperatures …

Ornithogalum Nurdaniae (Liliaceae), A New Species From North-West Anatolia, Turkey, Yavuz Bağci, Ahmet Savran, İsa Başköse

Turkish Journal of Botany

Ornithogalum nurdaniae Y.Bağcı & Savran sp. nov. (Liliaceae), a new species related to O. oligophyllum E.D.Clarke, is described and illustrated from Uludağ (the Bithynian Olympus), a mountain in NW Anatolia well known for its rich flora and many local endemics (A2 Bursa province). Diagnostic morphological characters are discussed. Notes are also presented on the ecology, biogeography, and conservation status of the new species.

A First Vouchered Wild Record For The Flora Of Turkey: Aegilops Juvenalis (Thell.) Eig (Poaceae), Evren Cabi̇, Musa Doğan

Turkish Journal of Botany

Aegilops juvenalis (Thell.) Eig (Poaceae) is recorded and vouchered for the first time from Turkey. This first vouchered wild record is confined to Ceylanpınar province in C8 Şanlıurfa. The diagnostic morphological characters discriminating it from of Aegilops crassa Boiss. are pointed out. Notes are presented on its ecology and phenology. A distribution map of this species is also given.

Lichens And Lichenicolous Fungi Of Kızıldağ (Derebucak, Konya), Mustafa Kocakaya, Mehmet Gökhan Halici, Ahmet Aksoy

Turkish Journal of Botany

Herein 152 taxa of lichens and lichenicolous fungi belonging to 68 genera are reported from Kızıldağ (Derebucak district, Konya province). Of these, 149 taxa are reported from the study area for the first time and 96 taxa are new for Konya province. Lecanora perpruinosa Fröberg and Toninia submexicana de Lesd. are new records for Turkey and Asia.

Lichenised And Lichenicolous Fungi Of Aladağlar National Park (Niğde, Kayseri And Adana Provinces) In Turkey, Mehmet Gökhan Halici, Ahmet Aksoy

Turkish Journal of Botany

Three hundred and two lichenised fungi taxa belonging to 90 genera and 45 lichenicolous fungi taxa belonging to 24 genera are reported from Aladağlar National Park. Of these, 290 lichenised fungi taxa and 21 lichenicolous fungi taxa are reported for the first time from Aladağlar National Park. Nine species of lichenised fungi, namely Arthopyrenia fraxini A.Massal., Aspicilia obscurata (Fr.) Arnold, Cephalophysis leucospila (Anzi) H.Kilias & Scheid., Chaenotheca ferruginea (Turner ex Sm.) Mig., Collema texanum var. texanum Tuck., Leconora usbekica Poelt, Placidium boccanum (Servít) Breuss, Sarcogyne distinguenda Th.Fr., and Verrucaria latericola Erichsen, are new to Turkey. One lichenicolous fungus species, Stigmidium …

Nuclear And Non-Nuclear Interactions In F_1 Hybrid Populations Of Three Solanum Species In The Subgenus Leptostemonum,Section Melongena (Solanaceae), Olatunji A. Oyelana, K. Olusola Ogunwenmo

Turkish Journal of Botany

Reciprocal crosses involving Solanum gilo Raddi, S. anguivi Lam. and S. macrocarpon L., subg. Leptostemonum (Dunal) Bitter sect. Melongena Dunal were produced in order to assess inherent nuclear and non-nuclear influences on hybrid fitness, the extent of genomic change, and species compatibility. Hybrids expressed intermediacy and overlaps in leaf, petiole, petal, and plant height dimensions. Maternal influence was dominant in growth habit, leaf shape and texture, flower colour, and fruit size, while paternal control was limited to fruit colour in Solanum gilo × S. macrocarpon. Pollen viability was reduced from 97.3%-86.5% in parents to 53.8%-20.5% in hybrids. S. gilo × …

2009 Astragalus Barrii Barneby (Barr’S Milkvetch) Survey On The Oglala National Grassland For The Nebraska Game And Parks Commission And Nebraska National Forest, Grace M. Kostel

Nebraska Game and Parks Commission: White Papers, Conference Presentations, and Manuscripts

Astragalus barrii Barneby (Barr’s milkvetch) is ranked globally vulnerable (G3) by NatureServe and critically imperiled (S1) by the Nebraska Natural Heritage Program. A. barrii is designated a sensitive species by the USDA Forest Service (USFS) Region 2 (R2). The Oglala National Grassland (ONG), located in northwestern Nebraska in Dawes and Sioux County, is within the USFS R2 jurisdiction. The purpose of this survey was to: (1) search for and document all A. barrii present on designated areas of the ONG and (2) collect data on rare plant species and high quality native plant community occurrences.

Instructions For Authors, Discovery Editors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Letter From The Dean, Lalit Verma

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

New Records For The Freshwater Algae Of Turkey, Tülay Baykal, Aydin Akbulut, İlkay Açikgöz, Abel U. Udoh, Kazim Yildiz, Bülent Şen

Turkish Journal of Botany

Algae samples were collected from important dam lakes and running waters of the Lower Euphrates Basin. Eighteen new records of Turkish freshwater algae were identified. Among these new records, 5 belong to Cyanophyta, 10 to Chlorophyta, 1 to Xanthophyta, and 2 to Bacillariophyta.

Characterizing The Variability Of Physical And Chemical Properties Across The Soil Individuals Mapped As Amy Silt Loam Soils In Southeastern Arkansas, B. Bhandari, Robert L. Ficklin

Journal of the Arkansas Academy of Science

Knowledge of physical and chemical properties of soil is relevant for landowners, researchers, and foresters, so that appropriate crop species and management practices to maximize site productivity can be selected. In addition to issues of plant productivity, the need for assessing soil properties has been expanded due to public interest in determining the consequences of management practices on soil quality relative to sustainability of crop ecosystem functions. The USDA-Natural Resources Conservation Service (NRCS) delineated soil mapping units to provide information about physical and chemical properties of soil in each soil series. However, soil mapping units do not provide details about …

Vegetable Growing : A Guide For Home Gardeners In Western Australia, Department Of Agriculture, Western Australia

Bulletins 4000 -

DAFWAs popular publication about vegetable growing for home gardeners.

Land Resources Series No 21 - Tambellup-Borden Area Land Resources Survey, Angela Stuart-Street, Rohan Marold

Natural resources published reports

AGDEX 526

Land Resources Series No. 21

This report presents results from soil-landscape mapping at a scale of 1: 100,000 in the Tambellup- Borden area of Western Australia. It is accompanied by a soil-landscape map covering almost 511,000 hectares.

Most of the survey occurs within the upper Frankland-Gordon, Kent, North Stirlings Basin and upper reaches of the Pallinup and Kalgan River catchments. The survey falls within the Katanning and Albany Department of Agriculture and Food advisory districts.

Seventeen soil-landscape systems have been identified and are represented on the map on the accompanying CD-ROM. These systems have been further divided into …

Phylogeny, Adaptive Radiation, And Historical Biogeography In Bromeliaceae: Insights From An Eight-Locus Plastid Phylogeny, Thomas J. Givnish, Michael H. J. Barfuss, Benjamin Van Ee, Ricarda Riina, Katharina Schulte, Ralf Horres, Philip A. Gonsiska, Rachel S. Jabaily, Darren M. Crayn, J. Andrew Smith

Biological Sciences Faculty Publications

Premise: Bromeliaceae form a large, ecologically diverse family of angiosperms native to the New World. We use a bromeliad phylogeny based on eight plastid regions to analyze relationships within the family, test a new, eight-subfamily classification, infer the chronology of bromeliad evolution and invasion of different regions, and provide the basis for future analyses of trait evolution and rates of diversification.

Methods: We employed maximum-parsimony, maximum-likelihood, and Bayesian approaches to analyze 9341 aligned bases for four outgroups and 90 bromeliad species representing 46 of 58 described genera. We calibrate the resulting phylogeny against time using penalized likelihood applied …

A New Record For Turkey: Salvia Aristata Aucher Ex Benth. (Lamiaceae), Lütfi̇ Behçet, Davut Avlamaz

Turkish Journal of Botany

Salvia aristata Aucher ex Benth. (Lamiaceae) is recorded for the first time from south-east Turkey.

Karyomorphological Study Of Eight Centaurea L. Taxa (Asteraceae) From Turkey, Esra Marti̇n, Muhi̇tti̇n Di̇nç, Ahmet Duran

Turkish Journal of Botany

Centaurea L. (Asteraceae) is one of the largest genera in Turkey. The chromosome number and morphology of 8 taxa belonging to the genus Centaurea were investigated using an image analysis system. Among these taxa, the chromosome numbers were as follows: 2n = 18 in C. cariensis Boiss. subsp. niveotomentosa (Hub.-Mor.) Wagenitz, C. lycaonica Boiss. & Heldr., C. virgata Lam., and C. polyclada DC.; 2n = 24 in C. cyanus L.; 2n = 36 in C. virgata and C. cariensis Boiss. subsp. cariensis: 2n = 40 in C. urvillei DC. subsp. urvillei; 2n = 54 in C. tuzgoluensis Aytaç & H.Duman. …

In Vitro And In Vivo Germination Of Cyclamen Alpinum Seeds, Betül Bürün, Oral Şahi̇n

Turkish Journal of Botany

Cyclamen trochopteranthum O.Schwarz has a confusing history, having been identified in the last part of the 19^{th} century and described as Cyclamen alpinum Sprenger. It remained known as C. alpinum until 1975, when it was described as C. trochopteranthum by Otto Schwarz. Cyclamen trochopteranthum is a species distributed in the south-western part of Turkey, but the C. trochopteranthum described in 1975 is today describe again as Cyclamen alpinum. The seeds of this species were collected from red pine forests in the Gökbel-Dalyan area on May 3-7 and stored with and without capsules in incubators at 20 °C. Among the seeds …

The Genus Halothamnus Jaub. & Spach (Chenopodiaceae) In Turkey, Helmut Freitag, Vagif Atamov, Esat Çeti̇n, Mustafa Aslan

Turkish Journal of Botany

The semidesert taxon Halothamnus (Chenopodiaceae), which is confirmed to supersede the later Aellenia, is represented in Turkey by H. glaucus subsp. glaucus and H. hierochunticus. The former was known to occur in Kars and Ağri provinces but was found recently in Kayseri province as well. The latter is a new record for the flora of Turkey from Şanlıurfa province close to the Syrian border. Full descriptions of the genus and the species occurring in Turkey are given and the case of Aellenia is discussed. Images and distributional data including maps are provided.

Notes On Some Lichenicolous Fungi Species From Turkey Ii, Mehmet Gökhan Halici, Mehmet Candan, Ayşen Özdemi̇r Türk

Turkish Journal of Botany

Nine species of lichenicolous fungi are reported from various provinces of Turkey. Five species of these (Endococcus janae, Lichenochora aprica, Pronectria xanthoriae, Sarcopyrenia cylindrospora, and Zwackhiomyces cervinae) are reported for the first time from Turkey. All these taxa, except Zwackhiomyces cervinae, are also new to Asia. Comments on their habitats and substrata and a short diagnosis are provided for each new taxon new to Turkey.

Callus Induction, Biomass Growth, And Plant Regeneration In Digitalis Lanata Ehrh.: Influence Of Plant Growth Regulators And Carbohydrates, Zohra Fatima, Abdul Mujib, Samar Fatima, Anjum Arshi, Shahid Umar

Turkish Journal of Botany

The effect of plant growth regulators (PGRs) and carbohydrate sources on callus induction, callus growth, and plant regeneration in foxglove was examined. Explants were transferred onto MS medium with various levels of PGRs and carbohydrates to determine the optimum explant and effective combinations of PGR treatment. For callus induction 6.0 mg L^{-1} of \alpha-naphthalene acetic acid (NAA) and 3.0 mg L^{-1} of benzyl-aminopurine (BA) were very responsive. Addition of cytokinins (BA and kinetin) at 0.5-3.0 mg L^{-1} to media containing NAA enhanced callus growth. Shoot regeneration was best achieved in MS + 6.0 mg L^{-1} of BA. Adenine sulphate (Ade) …

Diversity Of Endophytic Fungi From Various Aegean And Mediterranean Orchids (Saleps), Yüksel Gezgi̇n, Rengi̇n Eltem

Turkish Journal of Botany

The diversity and host specificity of endophytic and Rhizoctonia-like fungi were investigated in orchids from the Aegean and Mediterranean regions. Endophytic fungi from various Aegean and Mediterranean orchids (Anacamptis pyramidalis (L.) L.C.M.Richard, Orchis sancta L., Ophrys fusca Link., and Serapias vomeracea subsp. orientalis Greuter) were isolated and identified partially. Surface sterilisation of roots and tubers was carried out in laminar airflow under aseptic conditions. Several modified methods for the isolation of symbiotic fungi from orchid roots and tubers were used. Most of the orchid endophytes isolated was found to be Fusarium Link ex Fr. spp. A total of 47 isolates, …

Contribution To The Desmid Flora Of Turkey, Bülent Şahi̇n

Turkish Journal of Botany

Cosmarium botrytis Menegh. ex Ralfs var. tumidum Wolle, Cosmarium notabile Bréb. var. transiens Insam et Krieger, Cosmarium tetragonum (Näg.) Arch. in Pritchard var. tetragonum, and Cosmarium vogesiacum Lemaire var. alpinum (Schmidle) Laporte are recorded for the first time for the desmid flora of Turkey. The desmids are recorded from Yedigöller Lakes in the Eastern Black Sea region of Turkey.

Bulked Segregant Analysis Using The Goldengate Assay To Locate The Rpp3 Locus That Confers Resistance To Soybean Rust In Soybean, D. L. Hyten, James R. Smith, Reid D. Frederick, Mark L. Tucker, Qijian Song, P. B. Cregan

Department of Agronomy and Horticulture: Faculty Publications

Few resistance loci to soybean rust (SBR), caused by Phakopsora pachyrhizi Syd., have been genetically mapped and linked to molecular markers that can be used for marker assisted selection. New technologies are available for single nucleotide polymorphism (SNP) genotyping that can be used to rapidly map traits controlled by single loci such as resistance to SBR. Our objective was to demonstrate that the highthroughput SNP genotyping method known as the GoldenGate assay can be used to perform bulked segregant analysis (BSA) to fi nd candidate regions to facilitate effi cient mapping of a dominant resistant locus to SBR designated Rpp3 …

Mapping And Confirmation Of A New Allele At Rpp1 From Soybean Pi 594538a Conferring Rb Lesion–Type Resistance To Soybean Rust, Nanda Chakraborty, Joe Curley, Reid D. Frederick, D. L. Hyten, Randall L. Nelson, Glen L. Hartman, Brian W. Diers

Department of Agronomy and Horticulture: Faculty Publications

Soybean rust, caused by Phakopsora pachyrhizi (H. Sydow & Sydow), is a destructive soybean [Glycine max (L.) Merr.] disease and identification of new resistance genes is essential for effective rust management. Our research objectives were to map and confirm the location of resistance gene(s) in PI 594538A using a population of 98 F_3:4 lines from across between PI 594538A (reddish-brown [RB] lesions) and the susceptible cultivar Loda (tan [TAN] lesions). The lines were inoculated with the P. pachyrhizi isolate ZM01-1 from Zimbabwe. The RB resistance in PI 594538A mapped on linkage group G as a single dominant gene. …

Agroecology As A Science, A Movement And A Practice: A Review, A. Wezel, S. Bellon, T. Doré, Charles A. Francis, D. Vallod, C. David

Department of Agronomy and Horticulture: Faculty Publications

Agroecology involves various approaches to solve actual challenges of agricultural production. Though agroecology initially dealt primarily with crop production and protection aspects, in recent decades new dimensions such as environmental, social, economic, ethical and development issues are becoming relevant. Today, the term ‘agroecology’ means either a scientific discipline, agricultural practice, or political or social movement. Here we study the different meanings of agroecology. For that we analyse the historical development of agroecology. We present examples from USA, Brazil, Germany, and France. We study and discuss the evolution of different meanings agroecology. The use of the term agroecology can be traced …

Detection And Validation Of Single Feature Polymorphisms Using Rna Expression Data From A Rice Genome Array, Sung-Hyun Kim, Prasanna R. Bhat, Xinping Cui, Harkamal Walia, Jin Xu, Steve Wanamaker, Abdelbagi M. Ismail, Clyde Wilson, Timothy J. Close

Department of Agronomy and Horticulture: Faculty Publications

Background: A large number of genetic variations have been identified in rice. Such variations must in many cases control phenotypic differences in abiotic stress tolerance and other traits. A single feature polymorphism (SFP) is an oligonucleotide array-based polymorphism which can be used for identification of SNPs or insertion/deletions (INDELs) for high throughput genotyping and high density mapping. Here we applied SFP markers to a lingering question about the source of salt tolerance in a particular rice recombinant inbred line (RIL) derived from a salt tolerant and salt sensitive parent. Results: Expression data obtained by hybridizing RNA to an oligonucleotide array …

Antibiotic Use In Animal Production: Environmental Concerns, Teshome H. Regassa, Richard K. Koelsch, Charles S. Wortmann, Richard F. Randle, Akwasi A. Abunyewa

Department of Agronomy and Horticulture: Faculty Publications

Introduction

Antibiotic1 use in animal production has led to improved feed use efficiency and increased growth rates. In turn, these resulted in reduced food production costs and reduced excrement of manure nutrients which may cause pollution problems.

On the other hand, antibiotic use leads to antibiotic resistance and a possible reduction in effectiveness of treatment options for both animals and humans. This publication addresses these issues.

Disease-causing microorganisms2, including bacteria,are the most diverse and numerous organisms on earth. Diverse in their habitat, environmental adaptation, and mechanisms of reproduction, they have short generations with high multiplication rates. Such characteristics help develop …

Mojave Applied Ecology Notes Winter 2009, Scott R. Abella, Lindsay P. Chiquoine, Alice C. Newton

Mojave Applied Ecology Notes

Chronology of forest structure and use in the Spring Mountains, Soil-Tech’s restoration work balancing construction with nature, species performance and treatment effectiveness for revegetation projects, and strategic research areas for Mojave conservation and management