Neuroscience and Neurobiology Commons^™

Sense Of Community And Space, Amanda Corona

Celebration of Learning

Sense of community (SOC) is defined as a person’s experience of a group or specific area (Kenkmann et al, 1996). Physical spaces can affect SOC; small colleges have higher SOC on average than universities (Lounsbury & DeNeui, 1996). A person’s identity, especially ethnic identity, can also influence SOC (Rivas-Drake, 2012; Liu, 2005). However, there is less work on the intersection of physical space and ethnic identity (Devlin et al, 2008). This raises the questions: how does the experience of a community space affect someone’s SOC, and would it vary by ethnicity?

The relationship between communal spaces and identity can be …

Novel Characterization Of The Role Of Orthologous Xap5 In Caenorhabditis Elegans, Nabor Vazquez

Lawrence University Honors Projects

Cilia are one of the oldest and most well conserved cellular organelles. Cilia provide an essential role in cellular locomotion, fluid regulation, and are a site for signal transduction pathways involved in sensation. A new study suggests that XAP5 is a transcription factor in a unicellular organism, Chlamydomonas reinhardtii, which regulates gene expression needed for proper cilium assembly. Our study investigates the conservation of the role of XAP5 in a multicellular system, Caenorhabditis elegans. Alignments between protein, coding region, and promoter sequences for XAP5 orthologs from related species show a good conservation in DNA and protein sequences. As part of …

Sensory Perception, Adrian Rodriguez-Contreras

Open Educational Resources

Different types of sensory systems with their functional modalities will be presented. The biological bases for how these functions are generated and modified will then be described. As vision is the principal means of perception, we will focus in this course most on visual processing. Scientific data will be integrated into the lectures, such that students develop critical skills in analyzing data and proposing hypotheses.

Spirituality And The Infant Brain: Implications For Attachment Theory And Therapeutic Process Across The Life Span, Caitlin Eliasson

Consensus

No abstract provided.

Changes In Hemodynamic Response To Faces, Scenes, And Objects In A Visual Statistical Learning Task: An Fmri Analysis, Aaron T. Halvorsen

Honors Program: Senior Projects (Public)

Learning causes changes in brain activity and neural connections. Statistical learning is an implicit learning process that involves extracting regularities from the environment and finding patterns in stimuli based on their transitional probabilities. The following study describes an attempt to elucidate temporal changes in hemodynamic activity for three category-specific brain areas using functional magnetic resonance imaging (fMRI). Blood oxygen-level dependent signal (BOLD) responses were collected while subjects viewed faces, scenes, and objects with high and low transitional probabilities in an fMRI scanner. We expected brain activity to show a temporal shift in timing of activation when comparing BOLD signal responses …

Acc Theta Improves Hippocampal Contextual Processing During Remote Recall, Ryan A. Wirt, James M. Hyman

Psychology Faculty Research

Consolidation studies show that, over time, memory recall becomes independent of the medial temporal lobes. Multiple lines of research show that the medial frontal cortex, including the anterior cingulate cortex (ACC), is involved with contextual information processing and remote recall. We hypothesize that interactions between the ACC and hippocampal area CA1 will change as memories became more remote. Animals are re-exposed to multiple environments at different retention intervals. During remote recall, ACC-CA1 theta coherence increases, with the ACC leading area CA1. ACC theta regulates unit spike timing, gamma oscillations, and ensemble and single-neuron information coding in CA1. Over the course …

Investigating Neuroinflammation And Demyelination In The Nervous System Of Twitcher Mice By The Use Of Immunohistochemistry, Irene Wilson

Natural Sciences and Mathematics | Biological Sciences Master's Theses

Neuroinflammation and demyelination are the hallmark lesions of the Twitcher mouse—the model of Krabbe Disease. By analyzing hemibrains and sciatic nerves via immunohistochemistry, we supported the microglial hypothesis that early activation of microglial cells, macrophages, and globoid cells in the nervous system of Twitcher mice results in specific cellular polarization states that may contribute to myelin loss. The influx of activated macrophages seen in both the central and peripheral nervous systems at days 21 and 17, respectively, accounted for this polarization. Using selected M1 and M2 markers, YKL-40, and GPNMB and CD206, respectively, we proved that microglial cells and macrophages …

Targeted Genome-Scale Gene Activation And Gene Editing In Human Cells To Understand Disease Models, Michael De La Cruz

KGI Theses and Dissertations

Since the discovery of sequence directed DNA editing reagents such as CRISPR-Cas9 RNA-guided and TALEN DNA endonucleases, there has been a snowball of advances in the life sciences due to the ability to efficiently edit and control genomes within living cells. CRISPR-Cas9 based genomic tools, which facilitate the high-throughput precise manipulation of genes, allow for unbiased functional genomic screens. We used a human CRISPR-Cas9 Synergistic Activation Mediator pooled library which utilizes an engineered protein complex for transcriptional activation of 23,430 endogenous genes to investigate the development of novel resistance mechanisms to lung cancer targeted therapy, Erlotinib. We set out to …

Jet Lag: What’S Light Got To Do With It?, Melissa Richardson

Adventist Human-Subject Researchers Association

Jet lag results in memory loss and sleepiness. Current treatments for jet lag focus on symptoms and not the cause of jet lag; disrupted light environment. This study in mice, uncovered mechanisms of how light regulates jet lag recovery and memory. This work informs our future studies in humans.

Is The Selective Tuning Model Of Visual Attention Still Relevant?, John K. Tsotsos

MODVIS Workshop

No abstract provided.

Towards A Better Understanding Of Temporomandibular Disorder, Jessica R. Cox

Graduate Theses/Dissertations

Results from the OPPERA study provided evidence that risk factors such as neck muscle tension, prolonged jaw opening, and female gender increase the likelihood of developing temporomandibular joint disorders (TMJD), which are prevalent, debilitating orofacial pain conditions. Peripheral and central sensitization, which mediate a lowering of the stimulus required for pain signaling, are implicated in the underlying pathology of chronic TMJD. The goal of my study was to investigate cellular changes in the expression of proteins associated with the development of central sensitization. Female Sprague-Dawley rats were injected with complete Freund’s adjuvant in the upper trapezius muscles to promote trigeminal …

Functional Organization Of Cortical Maps For Ocular Dominance And Light-Dark Polarity In Primary Visual Cortex, Sohrab Najafian, Jian Zhong Jin, Jose-Manuel Alonso

MODVIS Workshop

No abstract provided.

Computations Of Top-Down Attention By Modulating V1 Dynamics, David Berga, Xavier Otazu

MODVIS Workshop

The human visual system processes information defining what is visually conspicuous (saliency) to our perception, guiding eye movements towards certain objects depending on scene context and its feature characteristics. However, attention has been known to be biased by top-down influences (relevance), which define voluntary eye movements driven by goal-directed behavior and memory. We propose a unified model of the visual cortex able to predict, among other effects, top-down visual attention and saccadic eye movements. First, we simulate activations of early mechanisms of the visual system (RGC/LGN), by processing distinct image chromatic opponencies with Gabor-like filters. Second, we use a cortical …

Differentiating Changes In Population Encoding Models With Psychophysics And Neuroimaging, Jason Hays, Fabian Soto Phd

MODVIS Workshop

It is now common among visual scientists to make inferences about neural population coding of stimuli from indirect measures such as those provided by neuroimaging and psychophysics. The success of such studies depends strongly on simulation work using standard population encoding models extended with decoders (in psychophysics) and measurement models (in neuroimaging). However, not all studies are accompanied by simulation work, and those that are tend to vary widely in their assumptions about encoding, decoding, and measurement. To solve these issues, we designed a Python package (PEMGUIN) to assist computational modelling by providing simple ways to manage encoders' tuning functions, …

Bifurcation Analysis Of A Photoreceptor Interaction Model For Retinitis Pigmentosa, Anca R. Radulescu

Biology and Medicine Through Mathematics Conference

No abstract provided.

Spiking Activity In Networks Of Neurons Impacted By Axonal Swelling, Brian Frost, Stan Mintchev

Biology and Medicine Through Mathematics Conference

No abstract provided.

Virtual Eye: A Spatial-Temporal Bottom-Up Eye Sensitivity Model, Todd Goodall

MODVIS Workshop

Video quality and compression models use the

spatial contrast sensitivity function (CSF), which is solved

based on a linear system approximation. This function measures

the eye’s sensitivity to sinusoid gratings, ignoring the subtle

connectivity and inhomogeniety of cell density across the

visual field. Non-linear aspects of the eye, such as the change

in frequency sensitivity with changing illumination, are not

captured by this simple approximation. We propose Virtual

Eye, a bottom-up approach that models the spatio-temporal

dynamics of the eye across the visual field. Each functional

retinal cell layer in the eye is modeled using non-uniform spatial

cell responses, which …

Predicting Dynamics From Hardwiring In Canonical Low-Dimensional Coupled Networks, Anca R. Radulescu

Biology and Medicine Through Mathematics Conference

No abstract provided.

Variance Partitioning Reveals Consistent Representation Of Object Boundary Contours In Lo Across Different Datasets, Mark D. Lescroart, Utkarsh Singhal

MODVIS Workshop

No abstract provided.

The Challenge For Vision Of Fluctuating Real-World Illumination, David H. Foster

MODVIS Workshop

No abstract provided.

Approaches To Understanding The Function Of Intrinsic Activity And Its Relationship To Task-Evoked Activity In The Human Brain, Dohyun Kim

McKelvey School of Engineering Graduate Student Theses & Dissertations

Traditionally neuroscience research has focused on characterizing the topography and patterns of brain activation evoked by specific cognitive or behavioral tasks to understand human brain functions. This activation-based paradigm treated underlying spontaneous brain activity, a.k.a. intrinsic activity, as noise hence irrelevant to cognitive or behavioral functions. This view, however, has been profoundly modified by the discovery that intrinsic activity is not random, but temporally correlated at rest in widely distributed spatiotemporal patterns, so called resting state networks (RSN). Studies of temporal correlation of spontaneous activity among brain regions, or functional connectivity (FC), have yielded important insights into the network organization …

Coupled Correlates Of Attention And Consciousness, Ravi Varkki Chacko

McKelvey School of Engineering Graduate Student Theses & Dissertations

Introduction: Brain Computer Interfaces (BCIs) have been shown to restore lost motor function that occurs in stroke using electrophysiological signals. However, little evidence exists for the use of BCIs to restore non-motor stroke deficits, such as the attention deficits seen in hemineglect. Attention is a cognitive function that selects objects or ideas for further neural processing, presumably to facilitate optimal behavior. Developing BCIs for attention is different from developing motor BCIs because attention networks in the brain are more distributed and associative than motor networks. For example, hemineglect patients have reduced levels of arousal, which exacerbates their attentional deficits. More …

Moral Pathology, Katie Rapier

Arts & Sciences Graduate Student Theses and Dissertations

This dissertation explores the relationship between morality and mental illness. Mental illness is often thought to impair moral functioning but careful examination reveals that mental illness offers its own insight into moral functioning. While we learn a great deal about moral responsibility and exempting conditions (psychopathy and addiction), we also discover that there a multiple ways to be moral and that many individuals act morally despite ongoing conditions (high-functioning autism spectrum disorder and recovered borderline personality disorder). I conclude that these insights ought to shape our ethical theories.

Elucidating The Roles Of Astrocyte-Derived Factors In Recovery And Regeneration Following Spinal Cord Injury, Russell E. Thompson

McKelvey School of Engineering Graduate Student Theses & Dissertations

Central nervous system (CNS) injury often causes some level of long-term functional deficit, due to the limited regenerative potential of the CNS, that results in a decreased quality of life for patients. CNS regeneration is inhibited partly by the development of a glial scar following insult that is inhibitory to axonal growth. The major cell population responsible for the formation this glial scar are astrocytes, which has led to the belief that astrocytes are primarily inhibitory following injury. Recent work has challenged this conclusion, finding that astrocyte reactivity is heterogeneous and that some astrocytes are pro-regenerative following injury. Astrocyte transplantation …

Epistemic Justice And Epistemic Participation, Kate C.S. Schmidt

Arts & Sciences Graduate Student Theses and Dissertations

I advance a new theory of epistemic injustice, with important implications for pursuing epistemic justice. This project develops a positive account of epistemic justice, broadens the scope of the phenomenon, and motivates new interventions. This dissertations works towards a better understanding of what it means to be an epistemic subject and to be treated as such.I argue that epistemic injustice can be understood through a lens of participation in inquiry, rather than using the received view that focuses on testimony. On my account, victims are marginalized when disrespected and devalued as potential participants in inquiry due to prejudice. This account …

Investigating The Neurobiology Of Motivational Deficiencies In Major Depressive Disorder: 5-Ht1b Receptor Involvement In Behavioral Effects Of Fluoxetine (Prozac), Sarah Ferrigno

University Scholar Projects

Selective serotonin reuptake inhibitors (SSRIs) such as fluoxetine (Prozac) are the most commonly prescribed treatments for depression. Although efficacious for symptoms such as a depressed mood, SSRIs do not alleviate symptoms of amotivation, anergia, and fatigue. Furthermore, in clinical and preclinical studies, SSRIs have been shown to exacerbate motivational impairments and general fatigue. It is likely that fluoxetine-induced dysfunctions are due to overstimulation of one or more 5-HT receptors, with one possible candidate being the 5-HT_1B receptor. Therefore, the aim of the study was to evaluate the role of 5-HT_1BRs in fluoxetine-induced amotivation using a rodent behavioral …

Determining The Pathological Effects Of Prenatal Alcohol Exposure On Peripheral Neuropathy Via Spinal And Peripheral Immune Mechanisms, Joshua J. Sanchez

Biomedical Sciences ETDs

Previous studies have suggested that children with Fetal Alcohol Spectrum Disorder (FASD) display hypersensitivity to light touch. In support of this notion, we have demonstrated that applying a chronic constriction injury (CCI) to the sciatic nerve of rats that have prenatal alcohol exposure (PAE) results in heightened sensitivity to light touch, clinically termed allodynia. These observations coincided with heightened glial activation and enhanced peripheral immune reactivity. Considering allodynia is known to be mediated by both peripheral immune responses and spinal glial activation, it is reasonable to speculate that allodynia following PAE may be mediated through an alteration of immune reactivity. …

Epigenetic Modifications In Alzheimer’S Neuropathology And Therapeutics, Michelle Esposito, Goldie Libby Sherr

Publications and Research

Transcriptional activation is a highly synchronized process in eukaryotes that requires a series of cis- and trans-acting elements at promoter regions. Epigenetic modifications, such as chromatin remodeling, histone acetylation/deacetylation, and methylation, have frequently been studied with regard to transcriptional regulation/dysregulation. Recently however, it has been determined that implications in epigenetic modification seem to expand into various neurodegenerative disease mechanisms. Impaired learning and memory deterioration are cognitive dysfunctions often associated with a plethora of neurodegenerative diseases, including Alzheimer’s disease. Through better understanding of the epigenetic mechanisms underlying these dysfunctions, new epigenomic therapeutic targets, such as histone deacetylases, are being explored. Here …

Deletion Of P38Α Mapk In Microglia Blunts Trauma-Induced Inflammatory Responses In Mice, Josh M. Morganti, Danielle S. Goulding, Linda J. Van Eldik

Sanders-Brown Center on Aging Faculty Publications

Traumatic brain injury (TBI) is a significant cause of morbidity and mortality in the USA and other developed countries worldwide. Following the initial mechanical insult, the brain’s primary innate immune effector, microglia, initiate inflammatory signaling cascades and pathophysiological responses that can lead to chronic neuroinflammation and neurodegenerative sequelae. The p38α MAPK signaling pathway in microglia is a key contributor to inflammatory responses to diverse disease-relevant stressors and injury conditions. Therefore, we tested here whether microglia p38α contributes to acute and persistent inflammatory responses induced by a focal TBI. We generated conditional cell-specific knockout of p38α in microglia using a CX3CR1 …

Its Skin Is My Skin, Bryan Page

Graduate School of Art Theses

This text examines the complexity of attempting to empathize with bodies that are vastly othered from my own. This broad yet nuanced subject crosses epistemological boundaries and complicates the dualities between both the mind and body, and between the corporeal and the virtual. My desire to better understand the conditions of another’s experience originates from a painful traumatic loss which caused me to feel isolated and incomplete. In response to this suffering, I long to emotionally connect with other beings and create artwork that attempts to bridge the qualia of individual experience.

I am interested in the capacity (or lack …