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Full-Text Articles in Population Biology

Comparing Fish Species Assemblage Between Impacted And Restored Estuarine Salt Marshes Within The Eel River Estuary, Humboldt Co. Ca, Adam Aguilar, Isaac Basham-Clair, Tristan F. Parkinson, Larkin C. Wells Jan 2023

Comparing Fish Species Assemblage Between Impacted And Restored Estuarine Salt Marshes Within The Eel River Estuary, Humboldt Co. Ca, Adam Aguilar, Isaac Basham-Clair, Tristan F. Parkinson, Larkin C. Wells

Undergraduate Scholarship

This report details a study assessing the fish assemblages of a recently restored estuarine salt marsh site, and a similar unrestored and impacted site along the Eel River estuary. These two sites are located within the Eel River (Wiya’t) estuary, roughly 10 miles west of the city of Fortuna, CA. This study was conducted during the months of September through October 2023. Data collection was done through seine net dragging at randomly selected sample points across both sites. Seine net hauls were recorded by species and species count, which were later computed using a diversity index to provide values representative …


A Preliminary Assessment Of The Spawning Potential Ratio Of Five Target Species Of The Coastal Gillnet Fishery In Guyana And Suriname, Tomas Willems, Elford Liverpool, Michael Hiwat Jan 2023

A Preliminary Assessment Of The Spawning Potential Ratio Of Five Target Species Of The Coastal Gillnet Fishery In Guyana And Suriname, Tomas Willems, Elford Liverpool, Michael Hiwat

Gulf and Caribbean Research

Data—limited stock assessment methods have the potential to positively impact livelihoods of fishermen around the world by providing management recommendations that aim to optimize sustainable yields from fisheries. Some years ago, a novel length— based (LB) method was developed for the assessment of spawning potential ratio (SPR), a measure of the reproductive capacity of fish stocks. We applied the LB—SPR method to 5 important target species of the coastal gillnet fishery in Guyana and Suriname. Nebris microps (Smalleye Croaker; 32% SPR) and Macrodon ancylodon (King Weakfish; 34% SPR) had the highest spawning potential, but remained below the 40% target level …


Pond-Breeding Amphibian Responses To Wetland Creation And Reforestation On A Legacy Surface Mine In The Monongahela National Forest, Lauren Breanna Sherman Jan 2023

Pond-Breeding Amphibian Responses To Wetland Creation And Reforestation On A Legacy Surface Mine In The Monongahela National Forest, Lauren Breanna Sherman

Theses and Dissertations--Forestry and Natural Resources

Surface mine reclamation has been an evolving practice since the Surface Mining Control and Reclamation Act was passed in 1977, holding mining companies accountable for returning ecological function to areas directly impacted by mining activities. One recent method of reclamation, the Forestry Reclamation Approach (FRA), aims to enhance reforestation and ecosystem function through the creation of wetlands, as opposed to traditional methods that often revert land to grasslands. However, wildlife response to FRA has rarely been investigated. The goal of this project was to analyze the effects of the four treatment types, FRA in two chronosequences, natural regeneration, and unmined …


Chemical Immobilization Of Helicopter-Captured Elk (Cervus Canadensis) And Survival Of Elk Calves In Southeastern Kentucky, Kathleen E. Williams Jan 2023

Chemical Immobilization Of Helicopter-Captured Elk (Cervus Canadensis) And Survival Of Elk Calves In Southeastern Kentucky, Kathleen E. Williams

Theses and Dissertations--Forestry and Natural Resources

Safe and effective chemical immobilization is critical to minimize stress and risk of injury when capturing free-ranging, wild ungulates. Many traditionally favored high potency opioids have been phased out or become unavailable because of increased regulations, leading to the development of two pre-mixed combination drugs, butorphanol-azaperone-medetomidine (BAM) and nalbuphine-medetomidine-azaperone (NalMed-A). Both drugs have been used to chemically immobilize ungulates, but their efficacy has not been documented in elk captured and transported via helicopter. During 2020 – 2022, we chemically immobilized helicopter-captured female elk (Cervus canadensis) with a single IM-injection of BAM (n = 41) or NalMed-A (n = …


Unraveling A Paradox Of Habitat Relationships: Scale-Dependent Drivers Of Temporal Occupancy-Abundance Relationships In A Cooperatively Breeding Bird, Natasha D.G. Hagemeyer, Mario B. Pesendorfer, Walter D. Koenig, Eric L. Walters Jan 2023

Unraveling A Paradox Of Habitat Relationships: Scale-Dependent Drivers Of Temporal Occupancy-Abundance Relationships In A Cooperatively Breeding Bird, Natasha D.G. Hagemeyer, Mario B. Pesendorfer, Walter D. Koenig, Eric L. Walters

Biological Sciences Faculty Publications

Context Spatial occupancy and local abundance of species often positively covary, but the mechanisms driving this widespread relationship are poorly understood. Resource dynamics and habitat changes have been suggested as potential drivers, but long-term studies relating them to abundance and occupancy are rare. In this 34-year study of acorn woodpeckers (Melanerpes formicivorus), a cooperatively breeding species, we observed a paradoxical response to changes in habitat composition: despite a reduction in the availability of high-quality breeding habitat, the population increased considerably.

Objectives We investigated the role of annual variation in food availability and long-term changes in habitat composition as predictors …


Western Gulls’ (Larus Occidentalis) Reproductive And Behavioral Responses To Human Disturbance, Lilamarie 'Asta Bowen Jan 2023

Western Gulls’ (Larus Occidentalis) Reproductive And Behavioral Responses To Human Disturbance, Lilamarie 'Asta Bowen

Cal Poly Humboldt theses and projects

Human disturbances can negatively affect wildlife by causing stress, altering behavior, or even impacting populations through changes in survival or productivity. Colonial-nesting seabirds are of particular concern due to population declines and their gregarious and conspicuous nature, which may attract human visitors. However, the effects of nearby human activities, though frequently negative, could be neutral or even positive through phenomena like habituation to human activities or subsidization by human-supplied food sources. In this observational study, I evaluated relative support for three hypotheses which may explain how Western Gulls are impacted by human activity: disturbance, habituation, and subsidization. I investigated this …


Carnivore And Ungulate Occurrence In A Fire-Prone Region, Sara J. Moriarty-Graves Jan 2023

Carnivore And Ungulate Occurrence In A Fire-Prone Region, Sara J. Moriarty-Graves

Cal Poly Humboldt theses and projects

Increasing fire size and severity in the western United States causes changes to ecosystems, species’ habitat use, and interspecific interactions. Wide-ranging carnivore and ungulate mammalian species and their interactions may be influenced by an increase in fire activity in northern California. Depending on the fire characteristics, ungulates may benefit from burned habitat due to an increase in forage availability, while carnivore species may be differentially impacted, but ultimately driven by bottom-up processes from a shift in prey availability. I used a three-step approach to estimate the single-species occupancy of four large mammal species: mountain lion (Puma concolor), coyote …


Straight From The Coyote’S Mouth: Genetic Identification Of Prey Through Oral Swabs Of Predators, Julie K. Young, Amanda M. Mast, James A. Walton, Torrey Rodgers, Antionette J. Piaggio, Daniel R. Taylor, Karen E. Mock Jan 2023

Straight From The Coyote’S Mouth: Genetic Identification Of Prey Through Oral Swabs Of Predators, Julie K. Young, Amanda M. Mast, James A. Walton, Torrey Rodgers, Antionette J. Piaggio, Daniel R. Taylor, Karen E. Mock

United States Department of Agriculture Wildlife Services: Staff Publications

Human-carnivore conflicts often involve the depredation of domestic livestock. These depredation events are rarely observed, yet mitigation typically involves identifying the species or individual involved for removal or relocation. We tested a molecular method to identify individuals involved in depredation events using mouth swabs to determine if prey DNA could be detected, and for how long. We fed mule deer Odocoileus hemionus meat to captive coyotes Canis latrans and swabbed their mouths at five predetermined intervals between 2–72 h after consumption of the deer meat. We assessed two different molecular forensic methods to analyze the saliva swabs: qPCR for species …


Movements And Resource Selection Of Wild Pigs Associated With Growth Stages Of Corn, Bethany A. Friesenhahn, Randall W. Deyoung, Michael J. Cherry, Humberto L. Perotto-Baldivieso, Kurt C. Vercauteren, Nathan P. Snow Jan 2023

Movements And Resource Selection Of Wild Pigs Associated With Growth Stages Of Corn, Bethany A. Friesenhahn, Randall W. Deyoung, Michael J. Cherry, Humberto L. Perotto-Baldivieso, Kurt C. Vercauteren, Nathan P. Snow

United States Department of Agriculture Wildlife Services: Staff Publications

Wild pigs (Sus scrofa) are one of the most successful invasive species globally and are often implicated in agricultural damage. This damage is expected to increase as ranges of wild pigs expand, impacting the human food supply and increasing costs of food production. Our objective was to evaluate movement behaviors of wild pigs relative to resource availability and landscape features in an agriculture-dominated landscape, with a goal of informing management practices for reducing damage to corn. We monitored hourly movements of adult wild pigs relative to corn crops using GPS collars during the 2019 and 2020 growing seasons (Feb–Sept) in …


Burmese Pythons In Florida: A Synthesis Of Biology, Impacts, And Management Tools, Jacquelyn C. Guzy, Bryan G. Falk, Brian J. Smith, John David Willson, Robert N. Reed, Nicholas G. Aumen, Michael L. Avery, Ian A. Bartoszek, Earl Campbell, Michael S. Cherkiss, Natalie M. Claunch, Andrea F. Currylow, Tylan Dean, Jeremy Dixon, Richard Engeman, Sarah Funck, Rebekah Gibble, Kodiak C. Hengstebeck, John S. Humphrey, Margaret E. Hunter, Jillian M. Josimovich, Jennifer Ketterlin, Michael Kirkland, Frank J. Mazzotti, Robert Mccleery, Melissa A. Miller, Matthew Mccollister, M. Rockwell Parker, Shannon E. Pittman, Michael Rochford, Christina Romagosa, Art Roybal, Ray W. Snow, Mckayla M. Spencer, J. Hardin Waddle, Any A. Yackel Adams, Kristen M. Hart Jan 2023

Burmese Pythons In Florida: A Synthesis Of Biology, Impacts, And Management Tools, Jacquelyn C. Guzy, Bryan G. Falk, Brian J. Smith, John David Willson, Robert N. Reed, Nicholas G. Aumen, Michael L. Avery, Ian A. Bartoszek, Earl Campbell, Michael S. Cherkiss, Natalie M. Claunch, Andrea F. Currylow, Tylan Dean, Jeremy Dixon, Richard Engeman, Sarah Funck, Rebekah Gibble, Kodiak C. Hengstebeck, John S. Humphrey, Margaret E. Hunter, Jillian M. Josimovich, Jennifer Ketterlin, Michael Kirkland, Frank J. Mazzotti, Robert Mccleery, Melissa A. Miller, Matthew Mccollister, M. Rockwell Parker, Shannon E. Pittman, Michael Rochford, Christina Romagosa, Art Roybal, Ray W. Snow, Mckayla M. Spencer, J. Hardin Waddle, Any A. Yackel Adams, Kristen M. Hart

United States Department of Agriculture Wildlife Services: Staff Publications

Burmese pythons (Python molurus bivittatus) are native to southeastern Asia, however, there is an established invasive population inhabiting much of southern Florida throughout the Greater Everglades Ecosystem. Pythons have severely impacted native species and ecosystems in Florida and represent one of the most intractable invasive-species management issues across the globe. The difficulty stems from a unique combination of inaccessible habitat and the cryptic and resilient nature of pythons that thrive in the subtropical environment of southern Florida, rendering them extremely challenging to detect. Here we provide a comprehensive review and synthesis of the science relevant to managing invasive …


Effects Of Corn Supplementation On Serum And Muscle Microrna Profiles In Horses, Clarissa Carver, Jason E. Bruemmer, Stephen Coleman, Gabriele Landolt, Tanja Hess Jan 2023

Effects Of Corn Supplementation On Serum And Muscle Microrna Profiles In Horses, Clarissa Carver, Jason E. Bruemmer, Stephen Coleman, Gabriele Landolt, Tanja Hess

United States Department of Agriculture Wildlife Services: Staff Publications

Laminitis associated with equine metabolic syndrome causes significant economic losses in the equine industry. Diets high in non-structural carbohydrates (NSC) have been linked to insulin resistance and laminitis in horses. Nutrigenomic studies analyzing the interaction of diets high in NSCs and gene expression regulating endogenous microRNAs (miRNA) are rare. This study's objectives were to determine whether miRNAs from dietary corn can be detected in equine serum and muscle and its impacts on endogenous miRNA. Twelve mares were blocked by age, body condition score, and weight and assigned to a control (mixed legume grass hay diet) and a mixed legume hay …


Using Drones To Detect And Quantify Wild Pig Damage And Yield Loss In Corn Fields Throughout Plant Growth Stages, Bethany A. Friesenhahn, Lori D. Massey, Randy W. Deyoung, Michael J. Cherry, Justin W. Fischer, Nathan P. Snow, Kurt C. Vercauteren, Humberto L. Perotto‐Baldivieso Jan 2023

Using Drones To Detect And Quantify Wild Pig Damage And Yield Loss In Corn Fields Throughout Plant Growth Stages, Bethany A. Friesenhahn, Lori D. Massey, Randy W. Deyoung, Michael J. Cherry, Justin W. Fischer, Nathan P. Snow, Kurt C. Vercauteren, Humberto L. Perotto‐Baldivieso

United States Department of Agriculture Wildlife Services: Staff Publications

Presently, there are an estimated 6.9 million wild pigs (Sus scrofa) in the U.S., which cause over US$1 billion in damage to agriculture, environmental impacts, and control costs. However, estimates of damage have varied widely, creating a need for standardized monitoring and a method to accurately estimate the economic costs of direct wild pig damage to agriculture. The goal of our study was to integrate remotely sensed imagery from drones and crop harvest data to quantify wild pig damage in corn fields. We used drones with natural color (red, green, blue) cameras to monitor corn fields at different …


Intracellular Diversity Of Wnv Within Circulating Avian Peripheral Blood Mononuclear Cells Reveals Host-Dependent Patterns Of Polyinfection, Dalit Talmi-Frank, Alex D. Byas, Reyes Murrieta, James Weger-Lucarelli, Claudia Rückert, Emily N. Gallichotte, Janna A. Yoshimoto, Chris Allen, Angela M. Bosco-Lauth, Barbara Graham, Todd A. Felix, Aaron C. Brault, Gregory D. Ebel Jan 2023

Intracellular Diversity Of Wnv Within Circulating Avian Peripheral Blood Mononuclear Cells Reveals Host-Dependent Patterns Of Polyinfection, Dalit Talmi-Frank, Alex D. Byas, Reyes Murrieta, James Weger-Lucarelli, Claudia Rückert, Emily N. Gallichotte, Janna A. Yoshimoto, Chris Allen, Angela M. Bosco-Lauth, Barbara Graham, Todd A. Felix, Aaron C. Brault, Gregory D. Ebel

United States Department of Agriculture Wildlife Services: Staff Publications

Arthropod-borne virus (arbovirus) populations exist as mutant swarms that are maintained between arthropods and vertebrates. West Nile virus (WNV) population dynamics are host-dependent. In American crows, purifying selection is weak and population diversity is high compared to American robins, which have 100- to 1000-fold lower viremia. WNV passed in robins leads to fitness gains, whereas that passed in crows does not. Therefore, we tested the hypothesis that high crow viremia allows for higher genetic diversity within individual avian peripheral blood mononuclear cells (PBMCs), reasoning that this could have produced the previously observed hostspecific differences in genetic diversity and fitness. Specifically, …


Investigating Nocturnal Uas Treatments In An Applied Context To Prevent Gulls From Nesting On Rooftops, Morgan Pfeiffer, Craig K. Pullins, Scott F. Beckerman, Joshua L. Hoblet, Brad Blackwell Jan 2023

Investigating Nocturnal Uas Treatments In An Applied Context To Prevent Gulls From Nesting On Rooftops, Morgan Pfeiffer, Craig K. Pullins, Scott F. Beckerman, Joshua L. Hoblet, Brad Blackwell

United States Department of Agriculture Wildlife Services: Staff Publications

Ring‐billed (Larus delawarensis) and herring (L. argentatus) gulls are numerous and widespread in North America. These gulls rank among the top 9 species for risk of bird‐aircraft collisions (hereafter strikes). The ubiquitous presence of gulls in urban coastal environments, including rooftop nesting behavior, are factors impacting strike risk. Our purpose was to assess gull response to a small uncrewed aircraft system (UAS) in hazing flights at night during the nest‐building phase. We hypothesized that nocturnal UAS operation, like nocturnal predator disturbance, might reduce gull numbers and, thus, strike risk to aircraft. In spring 2021, we conducted …


Urbanization Influences Spatiotemporal Patterns Of Roost Site Selection By Black Vultures And Turkey Vultures, Jacob E. Hill, Kenneth F. Kellner, Amanda E. Holland, Bryan M. Kluever, Morgan B. Pfeiffer, Travis L. Devault, Jerrold L. Belant Jan 2023

Urbanization Influences Spatiotemporal Patterns Of Roost Site Selection By Black Vultures And Turkey Vultures, Jacob E. Hill, Kenneth F. Kellner, Amanda E. Holland, Bryan M. Kluever, Morgan B. Pfeiffer, Travis L. Devault, Jerrold L. Belant

United States Department of Agriculture Wildlife Services: Staff Publications

Roost locations can be an important contributor to vulture conflicts with humans, but factors influencing roost-site selection at a landscape level remain largely unexplored. Further, there has been little research comparing how these factors vary between nocturnal and diurnal roosting sites. We used remote cameras to document daily variation in vulture use of 21 roosts (20 communication/water towers and 1 natural roost) near Beaufort, South Carolina, USA from October 2019–August 2020. Numbers of vultures on roosts increased with decreasing urban cover and with greater distance to water, but were not influenced by habitat fragmentation or elevation. Roosts surrounded by greater …


What Kills The Virtually Immortal Palms Of The Florida Scrub?, Warren G. Abrahamson Ii Jan 2023

What Kills The Virtually Immortal Palms Of The Florida Scrub?, Warren G. Abrahamson Ii

Faculty Journal Articles

Premise: Life span varies greatly across plants, with some species being capable of extreme longevity. Yet even long‐lived individuals are susceptible to climatic events, fire, and other challenges. We examined rare mortality events and their causes in two long‐lived palmettos over four decades. Methods: We monitored the survival of the clonal Serenoa repens and non‐clonal, Florida‐endemic Sabal etonia from 1981 to 2022 in four habitats along an elevational gradient within the globally imperiled Florida scrub ecosystem. We considered several challenges to palmetto survival, including extreme fires, shading due to lack of fire, droughts, periods of high precipitation, and possible pathogens. …


Quantifying Antarctic Krill Connectivity Across The West Antarctic Peninsula And Its Role In Large-Scale Pygoscelis Penguin Population Dynamics, Katherine L. Gallagher, Michael S. Dinniman, Heather J. Lynch Jan 2023

Quantifying Antarctic Krill Connectivity Across The West Antarctic Peninsula And Its Role In Large-Scale Pygoscelis Penguin Population Dynamics, Katherine L. Gallagher, Michael S. Dinniman, Heather J. Lynch

CCPO Publications

Antarctic krill (Euphausia superba) are considered a keystone species for higher trophic level predators along the West Antarctic Peninsula (WAP) during the austral summer. The connectivity of krill may play a critical role in predator biogeography, especially for central-place foragers such as the Pygoscelis spp. penguins that breed along the WAP during the austral summer. Antarctic krill are also heavily fished commercially; therefore, understanding population connectivity of krill is critical to effective management. Here, we used a physical ocean model to examine adult krill connectivity in this region using simulated krill with realistic diel vertical migration behaviors across …


Estimating The Distribution Of Oryzomys Palustris, A Potential Key Host In Expanding Rickettsial Tick-Borne Disease Risk, Catherine A. Lippi, Samuel Canfield, Christina Espada, Holly D. Gaff, Sadie J. Ryan Jan 2023

Estimating The Distribution Of Oryzomys Palustris, A Potential Key Host In Expanding Rickettsial Tick-Borne Disease Risk, Catherine A. Lippi, Samuel Canfield, Christina Espada, Holly D. Gaff, Sadie J. Ryan

Biological Sciences Faculty Publications

Increasingly, geographic approaches to assessing the risk of tick-borne diseases are being used to inform public health decision-making and surveillance efforts. The distributions of key tick species of medical importance are often modeled as a function of environmental factors, using niche modeling approaches to capture habitat suitability. However, this is often disconnected from the potential distribution of key host species, which may play an important role in the actual transmission cycle and risk potential in expanding tick-borne disease risk. Using species distribution modeling, we explore the potential geographic range of Oryzomys palustris, the marsh rice rat, which has been …


Utilizing Markov Chains To Estimate Allele Progression Through Generations, Ronit Gandhi Jan 2023

Utilizing Markov Chains To Estimate Allele Progression Through Generations, Ronit Gandhi

Honors Program: Senior Projects (Public)

All populations display patterns in allele frequencies over time. Some alleles cease to exist, while some grow to become the norm. These frequencies can shift or stay constant based on the conditions the population lives in. If in Hardy-Weinberg equilibrium, the allele frequencies stay constant. Most populations, however, have bias from environmental factors, sexual preferences, other organisms, etc. We propose a stochastic Markov chain model to study allele progression across generations. In such a model, the allele frequencies in the next generation depend only on the frequencies in the current one.

We use this model to track a recessive allele …


Individual And Population Responses To Hydrologic Variability In A Headwater Stream Salamander, Madaline Cochrane Jan 2023

Individual And Population Responses To Hydrologic Variability In A Headwater Stream Salamander, Madaline Cochrane

Graduate Student Theses, Dissertations, & Professional Papers

Understanding how organisms respond to environmental variability is a central goal in ecology – a goal made even more pressing by the herculean challenge global climate change presents to all organisms. Climate change is increasing the frequency and intensity of floods and droughts, which will likely have disproportionate effects on freshwater organisms. Many stream-associated species have multi-stage life histories. However, we lack an empirical understanding of life history and movement responses of these organisms to hydrologic disturbances, and how these responses may influence demographic rates. In my dissertation, I used a combination of growth, developmental, movement, and demographic data to …


Do Trap-Neuter-Return (Tnr) Practices Contribute To Human–Coyote Conflicts In Southern California?, Danielle M. Bucklin, Jennifer M. Shedden, Niamh M. Quinn, Robert Cummings, Paul Stapp Jan 2023

Do Trap-Neuter-Return (Tnr) Practices Contribute To Human–Coyote Conflicts In Southern California?, Danielle M. Bucklin, Jennifer M. Shedden, Niamh M. Quinn, Robert Cummings, Paul Stapp

Human–Wildlife Interactions

One possible contributor to the unusually high number of conflicts between coyotes (Canis latrans) and people in urban southern California, USA, may be the abundance of free-roaming domestic cats (Felis catus; cats) subsidized by feeding and augmented by trap-neuter-return (TNR) programs. To determine if coyotes regularly prey on and consume cats, we combined visual and molecular-genetic approaches to identify prey items in stomachs of 311 coyotes from Los Angeles County and Orange County, provided to the South Coast Research and Extension Center, in Irvine, California, between June 2015 and December 2018. We detected cat remains in …


Defining County-Level Terrestrial Rabies Freedom Using The Us National Rabies Surveillance System: Surveillance Data Analysis, Amber Kunkel, Gabriella Veytsel, Sarah C. Bonaparte, Haillie Meek, Xiaoyue Ma, Amy J. Davis, Jesse Bonwitt, Ryan M. Wallace Jan 2023

Defining County-Level Terrestrial Rabies Freedom Using The Us National Rabies Surveillance System: Surveillance Data Analysis, Amber Kunkel, Gabriella Veytsel, Sarah C. Bonaparte, Haillie Meek, Xiaoyue Ma, Amy J. Davis, Jesse Bonwitt, Ryan M. Wallace

United States Department of Agriculture Wildlife Services: Staff Publications

Background: Rabies is a deadly zoonotic disease with nearly 100% fatality rate. In the United States, rabies virus persists in wildlife reservoirs, with occasional spillover into humans and domestic animals. The distribution of reservoir hosts in US counties plays an important role in public health decision-making, including the recommendation of lifesaving postexposure prophylaxis upon suspected rabies exposures. Furthermore, in surveillance data, it is difficult to discern whether counties have no cases reported because rabies was not present or because counties have an unreported rabies presence. These epizootics are monitored by the National Rabies Surveillance System (NRSS), to which approximately 130 …


Deriving Spatially Explicit Direct And Indirect Interaction Networks From Animal Movement Data, Anni Yang, Mark Q. Wilber, Kezia R. Manlove, Ryan S. Miller, Raoul Boughton, James Beasley, Joseph Northrup, Kurt C. Vercauteren, George Wittemyer, Kim Pepin Jan 2023

Deriving Spatially Explicit Direct And Indirect Interaction Networks From Animal Movement Data, Anni Yang, Mark Q. Wilber, Kezia R. Manlove, Ryan S. Miller, Raoul Boughton, James Beasley, Joseph Northrup, Kurt C. Vercauteren, George Wittemyer, Kim Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Quantifying spatiotemporally explicit interactions within animal populations facilitates the understanding of social structure and its relationship with ecological processes. Data from animal tracking technologies (Global Positioning Systems [“GPS”]) can circumvent longstanding challenges in the estimation of spatiotemporally explicit interactions, but the discrete nature and coarse temporal resolution of data mean that ephemeral interactions that occur between consecutive GPS locations go undetected. Here, we developed a method to quantify individual and spatial patterns of interaction using continuous-time movement models (CTMMs) fit to GPS tracking data. We first applied CTMMs to infer the full movement trajectories at an arbitrarily fine temporal scale …


Long Term Changes In Aquaculture Influence Migration, Regional Abundance, And Distribution Of An Avian Species, Paul C. Burr, Brian S. Dorr, Jimmy L. Avery, Garrett M. Street, Bronson K. Strickland Jan 2023

Long Term Changes In Aquaculture Influence Migration, Regional Abundance, And Distribution Of An Avian Species, Paul C. Burr, Brian S. Dorr, Jimmy L. Avery, Garrett M. Street, Bronson K. Strickland

United States Department of Agriculture Wildlife Services: Staff Publications

Agricultural development has been causing changes to the environment and the abundance and distribution of avian species. Agriculture is dynamic with changes in products occurring at large scales over relatively short time periods. The catfish aquaculture industry is one such agriculture industry that has undergone dramatic changes over the last 25 years. The double-crested cormorant (Nannopterum auritum) is a piscivorous bird that has an extensive history with the aquaculture industry of Mississippi due to its depredation of cultured catfish. A large-scale monitoring program began in 1989 to estimate the abundance and location of cormorants at every known roost in the …


Raccoon Rabies Control And Elimination In The Northeastern Usa And Southern Québec, Canada, Amy J. Davis, Marianne Gagnier, Ariane Massé, Kathleen M. Nelson, Jordona D. Kirby, Ryan Wallace, Xiaoyue Ma, Christine Fehlner-Gardiner, Richard B. Chipman, Amy Gilbert Jan 2023

Raccoon Rabies Control And Elimination In The Northeastern Usa And Southern Québec, Canada, Amy J. Davis, Marianne Gagnier, Ariane Massé, Kathleen M. Nelson, Jordona D. Kirby, Ryan Wallace, Xiaoyue Ma, Christine Fehlner-Gardiner, Richard B. Chipman, Amy Gilbert

United States Department of Agriculture Wildlife Services: Staff Publications

Rabies virus (RABV) is a deadly zoonosis that circulates in wild carnivore populations in North America. Intensive management within the USA and Canada has been conducted to control the spread of the raccoon (Procyon lotor) variant of RABV and work towards elimination. We examined RABV occurrence across the northeastern USA and southeastern Québec, Canada during 2008–2018 using a multi-method, dynamic occupancy model. Using a 10 km× 10 km grid overlaid on the landscape, we examined the probability that a grid cell was occupied with RABV and relationships with management activities (oral rabies vaccination (ORV) and trap-vaccinate-release efforts), habitat, neighbour effects …


Validation Of A Nutria (Myocastor Coypus) Environmental Dna Assay Highlights Considerations For Sampling Methodology, Anna M. Mangan, John A. Kronenberger, Ian H. Plummer Jan 2023

Validation Of A Nutria (Myocastor Coypus) Environmental Dna Assay Highlights Considerations For Sampling Methodology, Anna M. Mangan, John A. Kronenberger, Ian H. Plummer

United States Department of Agriculture Wildlife Services: Staff Publications

Nutria (Myocastor coypus) is a semiaquatic rodent species that is invasive across multiple regions within the United States. Here, we evaluated a qPCR assay previously described for use in Japan for application across invasive populations in the United States. We also compared two environmental DNA sampling methodologies for this assay: field filtration of large volumes of water passed through filters versus direct sampling of small volumes of water. We validated assay specificity, generality, and sensitivity, compared assay performance between two independent laboratories, and successfully tested the assay in situ on a known wild population. The filtration method required …


Producers’ Perceptions Of Large Carnivores And Nonlethal Methods To Protect Livestock From Depredation: Findings From A Multistate Federal Initiative, Keith M. Carlisle, Hailey E. Ellis, Colorado State University, Alan D. Bright Jan 2023

Producers’ Perceptions Of Large Carnivores And Nonlethal Methods To Protect Livestock From Depredation: Findings From A Multistate Federal Initiative, Keith M. Carlisle, Hailey E. Ellis, Colorado State University, Alan D. Bright

United States Department of Agriculture Wildlife Services: Staff Publications

We examined livestock producers’ perceptions of wolves, grizzly bears, black bears, and mountain lions, as well as their experiences with using nonlethal methods to protect livestock from depredation. All producers in the study received nonlethal predator management assistance in 2020 from USDA-APHIS-Wildlife Services (“WS”) pursuant to a federally funded initiative focused on the use of nonlethal methods to protect livestock. Such methods included assistance from range riders (i.e., individuals who monitor livestock and carnivores), fladry (i.e., flags hung from rope that serve as a repellent), and other audio/visual deterrents (e.g., Foxlights). The producers did not specifically seek nonlethal assistance from …


Distribution Of Baylisascaris Procyonis In Raccoons (Procyon Lotor) In Florida, Usa, Mark W. Cunningham, Daniel P. Wolf, Katherine A. Sayler, Michael Milleson, Brittany Bankovich, Paul Schueller, Betsy S. Haley, Savannah Stura, Michael J. Yabsley Jan 2023

Distribution Of Baylisascaris Procyonis In Raccoons (Procyon Lotor) In Florida, Usa, Mark W. Cunningham, Daniel P. Wolf, Katherine A. Sayler, Michael Milleson, Brittany Bankovich, Paul Schueller, Betsy S. Haley, Savannah Stura, Michael J. Yabsley

United States Department of Agriculture Wildlife Services: Staff Publications

Baylisascaris procyonis, or raccoon roundworm, is an intestinal nematode parasite of raccoons (Procyon lotor) that is important to public and wildlife health. Historically, the parasite was uncommon in the southeastern US; however, the range of B. procyonis has expanded to include Florida, US. From 2010 to 2016, we opportunistically sampled 1,030 raccoons statewide. The overall prevalence was 3.7% (95% confidence interval=2.5–4.8%) of sampled individuals, and infection intensity ranged from 1 to 48 (mean±standard deviation 9.9±4.0). We found raccoon roundworm in 9/56 (16%) counties sampled, and the percent positive ranged from 1.1% to 13.3% of specimens collected per …


An Ode To Owls: Review Of What An Owl Knows: The New Science Of The World’S Most Enigmatic Birds By Jennifer Ackerman, Alan B. Franklin Jan 2023

An Ode To Owls: Review Of What An Owl Knows: The New Science Of The World’S Most Enigmatic Birds By Jennifer Ackerman, Alan B. Franklin

United States Department of Agriculture Wildlife Services: Staff Publications

Owls are mysterious creatures, mainly because we humans hardly ever encounter them. They are mostly nocturnal, are silent in their flight, and tend to unnerve us with their ghostly and sometimes quavering vocalizations. There have been numerous books on the natural history of owls written for nonexperts, but Jennifer Ackerman’s What an Owl Knows takes a novel tack, blending natural history and scientific discovery with a discussion of recent technological innovations. The result is a fascinating read on how scientists are beginning to better understand the lives and ecology of these secretive and rarely visible birds.

The book’s nine chapters …


Tourism‑Supported Working Lands Sustain A Growing Jaguar Population In The Colombian Llanos, Matthew Hyde, Esteban Payán, Jorge Barragan, Diana Stasiukynas, Sanmantha Rincón, William L. Kendall, Jerónimo Rodríguez, Kevin R. Crooks, Stewart W. Breck, Valerie Boron Jan 2023

Tourism‑Supported Working Lands Sustain A Growing Jaguar Population In The Colombian Llanos, Matthew Hyde, Esteban Payán, Jorge Barragan, Diana Stasiukynas, Sanmantha Rincón, William L. Kendall, Jerónimo Rodríguez, Kevin R. Crooks, Stewart W. Breck, Valerie Boron

United States Department of Agriculture Wildlife Services: Staff Publications

Understanding large carnivore demography on human-dominated lands is a priority to inform conservation strategies, yet few studies examine long-term trends. Jaguars (Panthera onca) are one such species whose population trends and survival rates remain unknown across working lands. We integrated nine years of camera trap data and tourist photos to estimate jaguar density, survival, abundance, and probability of tourist sightings on a working ranch and tourism destination in Colombia. We found that abundance increased from five individuals in 2014 to 28 in 2022, and density increased from 1.88 ± 0.87 per 100 km2 in 2014 to 3.80 …