Population Biology Commons^™

New Observations Of The Andean Ibis (Theristicus Branickii, Threskiornithidae): Distribution, Movements, And Behavior Near Volcán Antisana, Benjamin West

Independent Study Project (ISP) Collection

The Andean Ibis (Theristicus branickii) of the highland grasslands of Ecuador, Peru, and Bolivia is listed globally as Near Threatened and Critically Endangered in Ecuador. The Ecuadorian population is estimated at 100 individuals and is restricted to the vicinities of Volcán Antisana and Volcán Cotopaxi. Knowledge of the nesting biology of the Andean Ibis in Ecuador consists of a single filming in 1989. Much of its general ecology and movements is also unknown. The purpose of this study was to find evidence of nesting ibis in Ecuador while also collecting data on behavior, population, movements and interspecific interactions. Data was …

Spatial And Temporal Comparisons Of Gopher Rockfish (Sebastes Carnatus) Life History And Condition In South Central California, Natasha Leigh Meyers-Cherry

Master's Theses

Recent studies have shown environmental factors influence life history traits in fishes. Understanding intraspecific variability of life history characteristics and condition is necessary to determine local fisheries management strategies. Gopher rockfish, Sebastes carnatus, comprise 50% of the estimated shallow nearshore recreational rockfish catch in California, yet insufficient local data exist regarding life history traits and condition of this species. Our study locally defines growth parameters (maximum size and age), size (age) at reproductive maturity, and condition (hepatosomatic indices) for gopher rockfish in south central California. The growth parameter values of gopher rockfish from our study are similar to previously …

New Study Of Altitude And Butterfly Diversity Evaluation Of Butterfly Diversity In La Hesperia And Influence Of Altitude On Diversity, Savannah Artusi

Independent Study Project (ISP) Collection

Due to the increasing effects of climate change, studies focusing on bioindicator species are becoming more necessary than ever. Additionally, knowledge about global biodiversity can be very useful to conservation organizations because it helps them determine what areas need to be conserved the most .Butterflies are useful as bioindicators due to their complex life cycles, importance in the food chain, and sensitivity to environmental changes. This project focused on studying the overall biodiversity of butterflies in the La Hesperia reserve. In addition, this study aimed to determine how butterfly diversity varies at different altitudes. To do this, the reserve was …

Population Genetics Of Seaside Sparrow (Ammodramus Maritimus) Subspecies Along The Gulf Of Mexico., Stefan Woltmann, Phillip C. Stouffer, Christine M. Bergeon Burns, Mark S. Woodrey, Mollie F. Cashner, Sabrina S. Taylor

CREC Publications

Seaside Sparrows (Ammodramus maritimus) along the Gulf of Mexico are currently recognized as four subspecies, including taxa in Florida (A. m. juncicola and A. m. peninsulae) and southern Texas (Ammodramus m. sennetti), plus a widespread taxon between them (A. m. fisheri). We examined population genetic structure of this "Gulf Coast" clade using microsatellite and mtDNA data. Results of Bayesian analyses (Structure, GeneLand) of microsatellite data from nine locations do not entirely align with current subspecific taxonomy. Ammodramus m. sennetti from southern Texas is significantly differentiated from all other populations, but we found evidence of an admixture zone with A. m. …

Historical Species Distribution Models Predict Species Limits In Western Plethodon Salamanders, Tara A. Pelletier, Charlie Crisafulli, Steve Wagner, Amanda J. Zellmer, Brian C. Carstens

All Faculty Scholarship for the College of the Sciences

Allopatry is commonly used to predict boundaries in species delimitation investigations under the assumption that currently allopatric distributions are indicative of reproductive isolation; however, species ranges are known to change over time. Incorporating a temporal perspective of geographic distributions should improve species delimitation; to explore this, we investigate three species of western Plethodon salamanders that have shifted their ranges since the end of the Pleistocene. We generate species distribution models (SDM) of the current range, hindcast these models onto a climatic model 21 Ka, and use three molecular approaches to delimit species in an integrated fashion. In contrast to expectations …

Baseline Survey For Street Dogs In Haryana State, India, Amit Chaudhari

Stray and Feral Animal Populations Collection

This report describes a systematic dog survey program that was performed by Humane Society International (HSI) in Haryana state, India, in June and October 2014. This survey was conducted in support of the National Rabies Control (NRC) program, with its primary goals being to:

(1) Collect baseline data prior to initiation of a program of humane dog population management (DPM) and rabies control,

(2) Establish a standardized survey framework for future monitoring of DPM program impact, and

(3) Generate a population size estimate for street dogs to assist in strategic and logistic planning for the DPM and NRC programs in …

Fisheries Management Paper No.266 - Exmouth Gulf Prawn Managed Fishery Bycatch Action Plan 2014-2019. Version 1.0, Department Of Fisheries, Western Australia

Fisheries Management Papers

Bycatch is described as the part of the catch which is returned to the sea (usually referred to as non-retained or discarded) either because it has no commercial value or because legislative requirements preclude it being retained. Thus, this Bycatch Action Plan (BAP) includes unmarketable finfish and invertebrate species, along with endangered, threatened and protected (ETP) species, such as marine mammals, reptiles and some elasmobranchs.

It is Government policy to minimise bycatch in all commercial fisheries. This BAP details a program of actions to address bycatch issues in the Exmouth Gulf Prawn Managed Fishery (EGPMF), in accordance with the EGPMF …

Fisheries Management Paper No.265 - Exmouth Gulf Prawn Managed Fishery Harvest Strategy 2014 - 2019 Version 1.0, Department Of Fisheries Western Australia

Fisheries Management Papers

This fishery-specific harvest strategy has been developed in line with the Department of Fisheries' (Department) over-arching Harvest Strategy Policy for Aquatic Resources (Department of Fisheries in prep.) and in consultation with licensees. The broad scope of the Harvest Strategy Policy for Aquatic Resources is consistent with the National Harvest Strategy Guidelines but as well as considering all retained target species, it also incorporates retained non-target species, bycatch' and other ecological components to ensure the risks to these elements are managed effectively.

The Exmouth Gulf Prawn Managed Fishery (EGPMF) harvest strategy outlines the longand short-term fishery-specific management objectives; a description of …

The Phenology Of Ticks And The Effects Of Long-Term Prescribed Burning On Tick Population Dynamics In Southwestern Georgia And Northwestern Florida, Elizabeth R. Gleim, L. Mike Conner, Roy D. Berghaus, Michael L. Levin, Galina E. Zemtsova, Michael J. Yabsley

Environmental Studies / Environmental Science Faculty Scholarship

Some tick populations have increased dramatically in the past several decades leading to an increase in the incidence and emergence of tick-borne diseases. Management strategies that can effectively reduce tick populations while better understanding regional tick phenology is needed. One promising management strategy is prescribed burning. However, the efficacy of prescribed burning as a mechanism for tick control is unclear because past studies have provided conflicting data, likely due to a failure of some studies to simulate operational management scenarios and/or account for other predictors of tick abundance. Therefore, our study was conducted to increase knowledge of tick population dynamics …

Spatiotemporal Variation In Flow-Dependent Recruitment Of Long-Lived Riverine Fish: Model Development And Evaluation, Daisuke Goto, Martin J. Hamel, Jeremy J. Hammen, Mathew L. Rugg, Mark A. Pegg, Valery E. Forbes

School of Biological Sciences: Faculty Publications

Abstract Natural flow regimes can play a major role as an overarching ecosystem driver in reproduction and recruitment of riverine fishes. Human needs for freshwater however have altered hydrology of many riverine systems worldwide, threatening fish population sustainability. To understand and predict how spatiotemporal dynamics of flow regimes influence reproductive and recruitment variability, and ultimately population sustainability of shovelnose sturgeon (Scaphirhynchus platorynchus), we develop a spatially explicit (1D) individual-based population model that mechanistically (via energetics-based processes) simulates daily activities (dispersal, spawning, foraging, growth, and survival). With field observations of sturgeon and habitat conditions in a major tributary of …

A Consensus Taxonomy For The Hawaiian Honeycreepers, H. Douglas Pratt

Occasional Papers of the Museum of Natural Science, Louisiana State University

No abstract provided.

Ontogenetic Trait Variation Influences Tree Community Assembly Across Environmental Gradients, Marko J. Spasojevic, Elizabeth A. Yablon, Brad Oberle, Jonathan A. Myers

Biology Faculty Research

Intraspecific trait variation is hypothesized to influence the relative importance of community assembly mechanisms. However, few studies have explicitly considered how intraspecific trait variation among ontogenetic stages influences community assembly across environmental gradients. Because the relative importance of abiotic and biotic assembly mechanisms can differ among ontogenetic stages within and across environments, ontogenetic trait variation may have an important influence on patterns of functional diversity and inferred assembly mechanisms. We tested the hypothesis that variation in functional diversity across a topo-edaphic gradient differs among ontogenetic stages and that these patterns reflect a shift in the relative importance of different assembly …

Documentation Of The Black-Footed Ferret, Mustela Nigripes On The Standing Rock Indian Reservation, Mobridge, South Dakota, Michael P. Gutzmer, Jeffrey C. Kelly

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Since 1991, 19 specific black-footed ferret reintroduction projects have been conducted across 8 States, Canada, and Mexico. All five of the first ferret reintroductions (from 1991 to 1996) continue to be occupied by ferrets. The photographs of October 31 and November 1 are the first unequivocal documentation of black-footed ferrets on the Standing Rock Indian Reservation. Ferrets observed on Standing Rock may be dispersals from the nearby Cheyenne River Sioux Indian Reservation to the south. The nearest re-introduction site for ferrets is approximately 20 miles away, in Whitehorse, South Dakota, and the observation of ferrets on Standing Rock could document …

The Status Of Fishes In The Missouri River, Nebraska: Lake Sturgeon (Acipenser Fulvescens), Kirk D. Steffensen, Sam Stukel, Dane A. Shuman

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Lake Sturgeon (Acipenser fulvescens) occurrences in the Missouri River along Nebraska’s eastern border are historically sporadic and rare. Presently, the wild Lake Sturgeon population in this river reach may be extirpated. A Recovery Program initiated by the Missouri Department of Conservation (MDC) has stocked almost 150,000 hatchery-reared Lake Sturgeon into the lower Missouri River at several sites in Missouri. As a result, the number of Lake Sturgeon collected has increased. Since monitoring began in 2003, no Lake Sturgeon have been collected above Gavins Point Dam while 40 fish were collected downstream of Gavins Point Dam. The majority of …

Warming, Competition, And Bromus Tectorum Population Growth Across An Elevation Gradient, Aldo Compagnoni, Peter B. Adler

Green Canyon Environmental Research Area, Logan Utah

Cheatgrass (Bromus tectorum) is one of the most problematic invasive plant species in North America and climate change threatens to exacerbate its impacts. We conducted a two‐year field experiment to test the effect of warming, competition, and seed source on cheatgrass performance across an elevation gradient in northern Utah. We hypothesized that warming would increase cheatgrass performance, but that warming effects would be limited by competing vegetation and by local adaptation of cheatgrass seed sources. The warming treatment relied on open top chambers, we removed vegetation to assess the effect of competition from neighboring vegetation, and we reciprocally …

The Status Of Fishes In The Missouri River, Nebraska: Shovelnose Sturgeon (Scaphirhynchus Platorynchus), Kirk D. Steffensen, Sam Stukel, Dane A. Shuman

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

The Shovelnose Sturgeon Scaphirhynchus platorynchus remains the most abundant riverine sturgeon species in North American despite the anthropogenic modifications that have occurred throughout their historic range; however, their populations have declined throughout Nebraska since the construction of Fort Randall and Gavins Point Dams. Therefore, the objective of this study was to present the current status of Shovelnose Sturgeon in the Missouri River along Nebraska’s border. Data was acquired from 2003 to 2012 from all reaches of the Missouri River along Nebraska’s eastern border. Catch rates of Shovelnose Sturgeon increased in a downstream trend and were highest in the reach below …

The Status Of Fishes In The Missouri River, Nebraska: Pallid Sturgeon (Scaphirhynchus Albus), Kirk D. Steffensen, Dane A. Shuman, Robert A. Klumb, Sam Stukel

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Anthropogenic alterations to the Missouri River have placed the Pallid Sturgeon (Scaphirhynchus albus) population in jeopardy and contributed to their listing as an endangered species. Pallid sturgeon were always less common than the sympatric Shovelnose Sturgeon (S. platorynchus); however, Pallid Sturgeon seemed to be more affected by river alterations as the river sturgeon ratio has become more skewed towards Shovelnose Sturgeon. Shortly after listing, population augmentation with hatchery produced Pallid Sturgeon began to supplement the diminishing wild population. Therefore, the objective of this study was to present the current population status of the Pallid Sturgeon in …

Comments On Some African Taxa Of Leptotyphlopid Snakes, Jeff Boundy

Occasional Papers of the Museum of Natural Science, Louisiana State University

Miscellaneous material of African Leptotyphlopidae are discussed: An overlooked senior synonym of Namibiana latifrons, mental scale characteristics in Tricheilostoma greenwelli, an insular record of Leptotyphlops pembae, a range expansion of Myriopholis adleri (new to the country of Ghana), and cephalic scale terminology of Rhinoleptus koniagui.

A Homogenizing Process Of Selection Has Maintained An 'Ultra-Slow' Acetylation Nat2 Variant In Humans, Blandine Patillon, Pierre Luisi, Estella S. Poloni, Sotiria Boukouvala, Pierre Darlu, E. Genin, Audrey Sabbagh

Human Biology Open Access Pre-Prints

N-acetyltransferase 2 (NAT2) is an important enzyme involved in the metabolism of a wide spectrum of naturally occurring xenobiotics, including therapeutic drugs and common environmental carcinogens. Extensive polymorphism in NAT2 gives rise to a wide interindividual variation in acetylation capacity which influences individual susceptibility to various drug-induced adverse reactions and cancers. Striking patterns of geographic differentiation have been described for the main slow acetylation variants of the NAT2 gene, suggesting the action of natural selection at this locus. In the present study, we took advantage of the whole-genome sequence data available from the 1000 Genomes project to investigate the …

Estimating Migration Rates Between Populations Of Zostera Marina In The San Francisco Bay, Elizabeth S. Gutierrez

STAR Program Research Presentations

Eelgrass (Zostera marina) is a highly clonal marine angiosperm that can also reproduce sexually through flowering and seed formation. In a previous study, Fst values from six microsatellite loci suggested that a perennial San Francisco Bay subpopulation at Point Molate (Richmond, California) was able to recover from a drastic 2006 die-off through seed recruitment from neighboring eelgrass subpopulations, changing its reproductive strategy from clonal to sexual. Although Fst measures continue to be widely used in population genetics, the assumptions under which they operate are not always appropriate given certain circumstances, such small population sizes and/or asymmetrical migration rates. Our summer …

Combining Demographic And Genetic Factors To Assess Population Vulnerability In Stream Species, Erin Landguth, C. C. Muhlfeld, R. S. Waples, L. Jones, Winsor H. Lowe, Diane C. Whited, J. Lucotch, H. Neville, Gordon Luikart

Biological Sciences Faculty Publications

Accelerating climate change and other cumulative stressors create an urgent need to understand the influence of environmental variation and landscape features on the connectivity and vulnerability of freshwater species. Here, we introduce a novel modeling framework for aquatic systems that integrates spatially explicit, individual-based, demographic and genetic (demogenetic) assessments with environmental variables. To show its potential utility, we simulated a hypothetical network of 19 migratory riverine populations (e.g., salmonids) using a riverscape connectivity and demogenetic model (CDFISH). We assessed how stream resistance to movement (a function of water temperature, fluvial distance, and physical barriers) might influence demogenetic connectivity, and hence, …

Population Genetic Structure Of Traditional Populations In The Peruvian Central Andes And Implications For South American Population History, Graciela S. Cabana, Cecil M. Lewis, Jr., Raúl Y. Tito, R. Alan Covey, Angela M. Cáceres, C. Leslie Castillo Pampas, Augusto F. De La Cruz, Diana Durand, Genevieve Housman, Brannon I. Hulsey, Gian Carlo Iannacone, Paul W. Lopez, Rolando Martínez, Ángel Medina, Olimpio Ortega Dávila, Karla Paloma Osorio Pinto, Susan I. Polo Santillán, Percy Rojas Domínguez, Meagan Rubel, Heather F. Smith, Silvia E. Smith, Verónica Rubín De Celis, Beatriz Lizárraga, Anne C. Stone

Human Biology Open Access Pre-Prints

Molecular-based characterizations of Andean peoples are traditionally conducted in the service of elucidating continental-level evolutionary processes in South America. Consequently, “western” Andean population genetic variation is often represented in relation to “eastern” variation among Amazon and Orinoco River Basin populations. This west-east contrast in patterns of population genetic variation is typically attributed to large-scale phenomena, such as dual founder colonization events and/or differing long-term microevolutionary histories. However, alternative explanations that consider the nature and causes of population genetic diversity within the Andean region remain underexplored.

Here we examine population genetic diversity in the Peruvian Central Andes using mtDNA HVI and …

Música De Las Grullas: Una Historia Natural De Las Grullas De América, Paul A, Johnsgard, Enrique H. Weir, Karine Gil-Weir

Zea E-Books Collection

En un sábado mágico de marzo, maneje con un estudiante de postgrado hasta el valle central del Platte, al oeste de Grand Island, tanto para ver la migración primaveral de aves acuáticas como la de las grullas grises. Tal vez fue una suerte que yo no estuviera preparado emocionalmente para ver como innumerables grullas salpicaban el cielo de horizonte a horizonte, o girando grácilmente sus cabezas como si estuvieran atrapados en algún torbellino de ultra cámara lenta, su vibrato produce una cadencia descendente como la música de un coro aviar angelical. Desde los días de mi infancia, cuando, por primera …

Persistence And Stability Of Eastern Afromontane Forests: Evidence From Brevicipitid Frogs, Simon P. Loader, F. Sara Ceccarelli, Michele Menegon, Kim M. Howell, Roman Kassahun, Abebe A. Mengistu, Samy A. Saber, Fikirte Gebresenbet, Rafael O. De Sá, Et Al.

Biology Faculty Publications

Aim: The persistence and stability of habitats through time are considered predictors of high levels of biodiversity in some environments. Long-term habitat persistence and stability may explain the species-rich, endemic forest fauna and flora of the Eastern Afromontane Biodiversity Region (EABR). Using comple- mentary phylogenetic and biogeographical approaches, we examine evolution- ary patterns in EAR brevicipitid frogs. Using these data, we test whether brevicipitid history reflects patterns of long-term forest persistence and/or sta bility across the EABR.

Location: East Africa.

Methods: A dated phylogeny for brevicipitids was constructed using two nuclear and three mitochondrial markers. Alternative diversification modes were used …

Systematics Of The Neotropical Genus Leptodactylus Fitzinger, 1826 (Anura: Leptodactylidae): Phylogeny, The Relevance Of Non-Molecular Evidence, And Species Accounts, Rafael O. De Sá, Taran Grant, Arley Camargo, W. R. Heyer, María Laura Ponssa, Edward Stanley

Biology Faculty Publications

A phylogeny of the species-rich clade of the Neotropical frog genus Leptodactylus sensu stricto is presented on the basis of a total evidence analysis of molecular (mitochondrial and nuclear markers) and non-molecular (adult and larval morphological and behavioral characters) sampled from > 80% of the 75 currently recognized species. Our results support the monophyly of Leptodactylus sensu stricto, with Hydrolaetare placed as its sister group. The reciprocal monophyly of Hydrolaetare and Leptodactylus sensu stricto does not require that we consider Hydrolaetare as either a subgenus or synonym of Leptodactylus sensu lato. We recognize Leptodactylus sensu stricto, Hydrolaetare, Adenomera, and Lithodytes …

A Threat To New Zealand's Tuatara Heats Up, Kristine L. Grayson, Nicola J. Mitchell, Nicola J. Nelson

Biology Faculty Publications

No matter how many times we head to one of New Zealand's offshore islands, the feelings are always a mix of sheer awe at the beauty and biodiversity preserved in these special refuges and lingering nerves. Did we remember all the gear? Do we have enough food and water in case we get stuck? Can the helicopter land on the side of a cliff in these winds? These epic journeys are in pursuit of a lone remnant of the reptile evolutionary tree, with a unique ecology that has big implications under climate change.

Niche Differentiation In Meta Bourneti And M. Menardi (Araneae, Tetragnathidae) With Notes On The Life History, Stefano Mammola, Marco Isaia

International Journal of Speleology

Meta menardi and M. bourneti are two species of spiders inhabiting caves and other subterranean habitats. The occurrence of both species within the same cave has never been proved convincingly and several authors hypothesized a complete niche differentiation mainly based on microclimatic conditions.In order to study the apparent niche differentiation of the two species, we studied several populations of M. menardi and M. bourneti occurring in six caves in the Western Italian Alps (NW Italy). A series of squared plots were monitored monthly from March 2012 to February 2013. At each survey, we counted individuals and we collected the main …

The Genomic Architecture Of Population Divergence Between Subspecies Of The European Rabbit, Miguel Carneiro, Frank W. Albert, Sandra Afonso, Ricardo J. Pereira, Hernan Burbano, Rita Campos, Jose Melo-Ferreira, Jose A. Blanco-Aguiar, Rafael Villafuerte, Michael W. Nachman, Jeffrey M. Good, Nuno Ferrand

Biological Sciences Faculty Publications

The analysis of introgression of genomic regions between divergent populations provides an excellent opportunity to determine the genetic basis of reproductive isolation during the early stages of speciation. However, hybridization and subsequent gene flow must be relatively common in order to localize individual loci that resist introgression. In this study, we used next-generation sequencing to study genome-wide patterns of genetic differentiation between two hybridizing subspecies of rabbits (Oryctolagus cuniculus algirus and O. c. cuniculus) that are known to undergo high rates of gene exchange. Our primary objective was to identify specific genes or genomic regions that have resisted …

Jellyfish Throwdown: Invasive Versus Native, Brooke Bemowski, Trisha Huynh, Lindsay J. Sullivan, Wim Kimmerer

STAR Program Research Presentations

The San Francisco Bay Estuary is home to many species of marine and wildlife that create a delicate ecological balance. Invasive jellyfish introduced to the bay though cargo shipping are believed to be competing with the endangered delta smelt for the same food source of copepods. Samples of zooplankton were taken from high and low salinity zones in the San Francisco Bay over three years in months June through February to correlate with the peak of the jellyfish lifecycle. The preserved samples are looked through and jellyfish are removed and recorded. The species of jellyfish is determined using features such …

Biological Condition Of Money Pont Benthic Communities, Southern Branch Of The Elizabeth River (2010 And 2013), Daniel M. Dauer

Elizabeth River Reports

Executive Summary

The subtidal macrobenthic communities off Money Point in the Southern Branch of the Elizabeth River were quantitatively sampled in summer 2010 (Dauer 2011). The designated Money Point study area was part of a sediment contaminant remediation effort. The primary objectives of the present study were to: (1) characterize the biological health of the benthos of Money Point comparing pre-remediation (2010) and post-remediation (2013) conditions and (2) assess the effectiveness of the sediment contamination remediation efforts with respect to Money Point benthos. In this report the macrobenthic communities off Money Point were resampled in the summer of 2013 after …