Biodiversity Commons^™

Influence Of Landscape Characteristics On Eastern Gray Treefrog (Hyla Versicolor) Occupancy Within Managed Forests Of Pennsylvania And Virginia, Susanna G. Sousa

Antioch University Dissertations & Theses

Understanding the characteristics that influence amphibian occupancy within forest ecosystems is necessary for effective conservation and management. My study focused on how eastern gray treefrog (Hyla versicolor) occupancy is influenced by environmental attributes quantified at various spatial extents. From May through July 2020 and 2021, we deployed autonomous recording units at 986 unique locations within managed forests in Pennsylvania and Virginia. Landcover class and road density were evaluated around each sampling location at ten spatial extents between 60 and 4000 m. Additionally, I measured aspect, elevation, soil drainage class, distance to nearest wetland, and basal area at each …

Advancing The Blue Economy Through Sustainable Mariculture: The Prospect Of Pearl Oyster And Sponge Cultivation In St. Vincent And The Grenadines, Kevin Antonio Providence

Gulf and Caribbean Research

The Blue Economy is estimated to be worth over USD 2.5 trillion annually, or almost 3% of the world’s GDP in 2020. St. Vincent and the Grenadines (SVG) in the Caribbean region has a vast and rich marine space that is underutilized. This study aimed to explore the feasibility of pearl oyster and sponge farming to advance the country’s Blue Economy through sustainable mariculture. A qualitative approach was applied, using a literature review and thematic analysis of data gathered through semi—structured interviews and focus group discussions with relevant stakeholders. Among several species evaluated, the result of the study revealed that …

Wildlife Conservation And Adaptation To Humans, Valeria Mazza Phd, Claudio Carere

Animal Sentience

For many animal species, the ability to adapt to coexistence with the human species and to the environmental changes that humans cause is a biological imperative. This adaptive capacity varies not only between species, but within species. Studying individual differences in animals’ behavioral, cognitive and physiological adaptability is important for integrating ethology and conservation. Findings about animal cognitive capacities, including learning, need to be applied in conservation—but humans need to be educated about ethology, coexistence and conservation too.

Quick Guide To Aquatic Weeds Of Oregon, Gabriel E. Campbell, Ashley Newcomb, Jacob Rose

Center for Lakes and Reservoirs Publications and Presentations

This document contains a quick, non-technical, pictured-based field guide to aquatic weed species in Oregon and throughout the Pacific Northwest. It contains approximately 50 common, newly emerging, and watch list exotic weeds and common native look-alike plants. The intended audience for this guide includes weed professionals, restoration practitioners, land managers, professional botanists, and amateur naturalists.

Pioneering Plant Metabolomic Library Of Indonesian Plants For Research, Conservation, Capacity Building And Economic Development, Isabel Armas, Ernawati Sinaga, Nonon Saribanon, Noverita, Alvira Noer Effendi, Chairil Rohadi, Hanifa Nur Adilah, Vyacheslav Dushenkov, Ilya Raskin

Publications and Research

Indonesia, one of the world’s most biodiverse countries, is undergoing mass deforestation, exacerbating climate change and leading to accelerated loss of species. This project addressed the urgent need to conserve endangered Indonesian biodiversity. Specifically, the potentially life-saving bioactive compounds harbored within its plants. A group of Indonesian researchers from Universitas Nasional (UNAS) in Jakarta received training in RApid Metabolome Extraction and Storage (RAMES) technology, an ethical, low-impact, field-deployable and cost-effective methodology developed by Rutgers University. The team of Indonesian scientists used this technology to create the first metabolomic library of Indonesian plant species and an easily transportable collection containing 501 …

Long Term Trends In Mortality Rates Of A Smallmouth Bass Population, Caleb D. Anderson

Journal of Earth and Life Science

Smallmouth bass Micropterus dolomieu are known as a popular sport fish for anglers. When a known smallmouth bass fishery appears to have a dwindling population, it raises questions about the population health. A common indicator of the health of the population is the mortality rate. By comparing mortality, conclusions can be made on whether smallmouth bass are dying at a different rate in the system over time. Therefore, the objective of this study was to see if there had been a significant change in smallmouth bass mortality over a span of thirty years in Round Lake (DOW:010204), Aitkin County, Minnesota. …

Quantifying The Ecological Effects Of Salix Fragilis On Riparian Habitat In Kittitas County, Washington, Landon Shaffer

All Master's Theses

Invasive species threaten plant community structure and function globally. Riparian areas, the zone near streams where water influences vegetation, are especially sensitive to invasive species colonization, suffering large-scale shifts in community composition. Salix fragilis (crack willow) is a nonnative riparian species abundant in the lower elevation tributaries of central Washington. Some speculate whether this willow should be listed as invasive in Washington, despite a lack of regional supporting evidence. I studied riparian communities dominated by either S. fragilis or native species in the Kittitas Valley and measured biodiversity, quantified differences in solar attenuation, and compared leaf decomposition rates to learn …

Using Novel And Traditional Survey Techniques To Monitor Small Mammal Species In Northwestern California, Sydney Mccluskey

Cal Poly Humboldt theses and projects

Small mammal species play a critical role in forest ecosystems contributing significantly to overall forest biodiversity and ecological dynamics. Forest-dwelling species are among the most vulnerable to habitat loss and fragmentation. It is essential to develop efficient techniques for monitoring small mammal populations in forested ecosystems to inform conservation efforts and management plans; yet, monitoring small mammals in these habitats can be particularly challenging due to their size, activity patterns, and frequently nocturnal nature. In this study, I aimed to address two primary research objectives: 1) compare the effectiveness of 3 distinct camera-trap survey techniques (i.e., ground, tree, and tube) …

Assessing The Effects Of Remaining Northern California Kelp Forest Mesopredators On Purple Sea Urchin Abundance, Distribution, And Feeding Activity, Sandra E. Traverso

Cal Poly Humboldt theses and projects

Kelp forests are threatened by regional abiotic and biotic stressors, including overgrazing by sea urchins. On the north coast of California, purple sea urchins (Strongylocentrotus purpuratus) are prolific grazers of kelp and with the regional extinction of their main predator (sunflower stars, Pycnopodia helianthoides), it is unknown whether any remaining mesopredators could exert top-down control of purple urchin populations. Other known predators of purple urchins in northern California include rock crabs, which have been shown to control sea urchin populations in Atlantic urchin barrens and indirectly cause phase shifts back to kelp forests. Yet, little is known …

Flowering Rush (Butomus Umbellatus) Id Guide For The Columbia River, Gabriel Campbell, Jacob Rose

Center for Lakes and Reservoirs Publications and Presentations

This is a picture based field guide for how to identify Flowering Rush (Butomus umbellatus) in the Columbia River throughout Oregon and Washington. It includes how to tell this species from commonly co-occurring look-alike species.

Movement Behavior And Metapopulation Connectivity Of Stream Salamanders In Response To Disturbance Events, Kathryn M. Greene

Theses and Dissertations--Biology

Metapopulations are shaped by the dispersal between populations in a landscape. Disturbance events can disrupt this connectivity resulting in local population extinction. For my dissertation, I used a combination of empirical and theoretical techniques to examine dispersal in response to disturbance and assessed it’s population-level consequences. My research used capture-mark-recapture sampling techniques to evaluate stream salamander movement in response to (1) a supraseasonal drought and (2) mountaintop-removal-mining (MTR) and valley-filling (VF) and (3) agent-based simulation modeling to evaluate population extinction risk in response to varying dispersal and mortality rates.

First, I evaluated the effects of a supraseasonal drought, a severe …

Co-Divergence Of Lemur Hosts And Gut Microbiomes Across Multiple Evolutionary Scales, Mariah E. Donohue

Theses and Dissertations--Biology

This dissertation bridges micro- and macroevolutionary approaches to understand the co-diversification of animal hosts and their gut microbiomes at different evolutionary timescales. I examined these dynamics using wild lemurs, a diverse Primate clade endemic to the island of Madagascar.

First, I tested the relative effects of host phylogenetic relationships, diet, and habitat in shaping the gut microbiome through deep evolutionary time and across distinct microbial kingdoms. I designed a natural experiment sampling feces from rainforest and dry forest lemur communities with similar phylogenetic assemblages and considerable variation in dietary strategy. Then, I amplified and sequenced two metabarcoding genes, the V4 …

Half Of Atlantic Reef-Building Corals At Elevated Risk Of Extinction Due To Climate Change And Other Threats, Luis Gutierrez, Beth Polidoro, David Obura, Francoise Cabada-Blanco, Christi Linardich, Emma Pettersson, Paul Pearce-Kelly, Krista Kemppinen, Juan Jose Alvarado, Lorenzo Alvarez-Filip, Anastazia Banaszak, Pilar Casado De Amezua, James Crabbe, Aldo Croquer, Joshua Feingold, Elizabeth Goergen, Stefano Goffredo, Bert Hoeksema, Danwei Huang, Emma Kennedy, Diego Kersting, Marcelo Kitahara, Petar Kružić, Margaret Miller, Flavia Nunes, Juan Pablo Quimbayo, Andrea Rivera-Sosa, Rosa Rodríguez-Martínez, Nadia Santodomingo, Michael Sweet, Mark Vermeij, Estrella Villamizar, Greta Aeby, Khatija Alliji, Daniel Bayley, Elena Couce, Benjamin Cowburn, C. Isabel Nuñez Lendo, Sean Porter, Kaveh Samimi-Namin, Tom Shlesinger, Bryan Wilson

Biological Sciences Faculty Publications

Atlantic reef-building corals and coral reefs continue to experience extensive decline due to increased stressors related to climate change, disease, pollution, and numerous anthropogenic threats. To understand the impact of ocean warming and reef loss on the estimated extinction risk of shallow water Atlantic reef-building scleractinians and milleporids, all 85 valid species were reassessed under the IUCN Red List Categories and Criteria, updating the previous Red List assessment of Atlantic corals published in 2008. For the present assessment, individual species declines were estimated based on the modeled coral cover loss (1989–2019) and projected onset of annual severe bleaching events (2020–2050) …

Regular Surveys Rescue Wildlife: What A Lucky And Unlucky Individual Tsukuba Clawed Salamander, Chia-Hsuan Hsu, Jiefeng Kang

Human–Wildlife Interactions

The Tsukuba clawed salamander (Onychodactylus tsukubaensis), native to Japan's Tsukuba mountain areas, faces peril from human activities and climate change. Classified as critically endangered by both the Japanese Ministry of Environment and the IUCN Red List, limited research has been conducted since its identification as a distinct species. Monthly surveys initiated in August 2023 aimed to understand its ecology. During a December 2023 survey, a remarkable encounter unfolded: a trapped individual salamander was discovered, initially assumed dead but miraculously alive. Despite an ulcerated tail wound, the salamander's survival presents a hopeful outcome for this endangered species. Uncertain of …

An Assessment Of Functional Characteristics In Macroinvertebrates And Fishes In The Lower Ogeechee River, Molly A. Mckeon

College of Graduate Studies: Theses & Dissertations

The southeastern United States is a hotspot for aquatic biodiversity; yet this region is also considered vulnerable to climate and land–use changes. The Ogeechee River is an unimpeded blackwater river in Georgia that drains into the Atlantic Ocean and a unique ecosystem due to the preservation of its natural state; Historically, research conducted in the river establishes a baseline for long-term ecological studies. The aim of this study is to compare aquatic macroinvertebrate and fish community composition data collected in 2014 to 2017 to a recently collected dataset from 2023 and document temporal changes. Water quality monitoring was performed throughout …

Benthic And Epibenthic Invertebrate Assemblages Associated With Estuarine Submerged Aquatic Vegetation Differ Between Native And Invasive Plants, Marissa Hall, Kathryn O'Shaughnessy, Bethany Kiley, Ashley Mcdonald, Taber Faurie, Zoey Hendrickson, Anna Reimer, Samantha Smith, Charles Martin

Gulf and Caribbean Research

Estuarine submerged aquatic vegetation (SAV) provides vital habitat for macroinvertebrate communities that support diverse food webs and subsequent ecosystem services. Invasive SAV, however, has the potential to alter estuarine food webs through competition with native SAV, resulting in different associated biological communities. In the Mobile-Tensaw Delta (Alabama, USA), the invasive Eurasian milfoil, Myriophyllum spicatum, is fast becoming the dominant SAV, out-competing native SAV such as wild celery, Vallisneria americana. This study investigated the above- and belowground macroinvertebrate assemblages associated with these SAV habitats. We found significantly different assemblages between the SAV, with V. americana supporting more even and …

Lycosidae Abundance And Diversity Across Lawn And Leaf Litter Substrate, Sage O. Lockett, Dan Albrecht-Mallinger

UROP Posters

Significant knowledge gaps exist in how land-cover impacts ground-hunting spider populations. To fill these gaps, this study investigates a common family of ground-hunting spiders, Lycosidae, to determine differences in their abundance and diversity in deciduous leaf litter and managed turfgrass (lawn). The study was conducted within a forested ecosystem at Virginia Commonwealth University's Rice Rivers Center in Charles City County, Virginia. I placed 10 belt transects (1m x 20m) on lawn substrate and 10 identical transects in deciduous forest leaf litter substrate. I performed repeated visual census via eyeshine and manual capture of up to three individuals per transect …

2024-2025 Report Of The Iucn Species Survival Commission And Secretariat, John P. Carroll, Rahul Kaul

Galliformes Specialist Group and Affiliated Societies: Reports and Other Materials

The Galliformes Specialist Group is committed to the worldwide conservation and sustainable management of all native populations of Galliformes species and their habitats.

Includes projected impact for 2021–2025, targets for 2021–2025, and statistics and information about the network, communications, and activities of the group for 2024–2025.

Building A Coordinated Framework For Research And Monitoring In Large-Scale International Marine Protected Areas: The Ross Sea Region As A Model System, Cassandra Brooks, Sharon Stammerjohn, Grant Ballard, Alice K. Duvivier, Eileen Hofmann, Michelle Larue, Cara Nissen, Alexander J. Orona, B. Jack Pan, Annie E. Schmidt, Nathan Walker, George M. Watters, John Weller

CCPO Publications

To fulfill their conservation potential and provide safeguards for biodiversity, marine protected areas (MPAs) need coordinated research and monitoring for informed management through effective evaluation of ecosystem dynamics. However, coordination is challenging, often due to knowledge gaps caused by inadequate access to data and resources, compounded by insufficient communication between scientists and managers. We propose to use the world's largest MPA in the Ross Sea, Antarctica as a model system to create a comprehensive framework for an interdisciplinary network supporting research and monitoring that could be implemented in other remote large-scale international MPAs. Our proposed framework has three key components: …

Social Interactions And Spatial Structure Drive Community Assembly Of Bacterial Biofilm, Matthew C. Bond

Dartmouth College Ph.D Dissertations

Despite the critical nature which microbial communities play in the natural world and human civilization, the breadth of understanding remains shallow. Challenged by scale, high variability between environments, and extensive diversity, microbial ecologists strive to understand connections between a community’s structure and function, as well as the ecological and evolutionary mechanisms underlying observed natural patterning of communities. Biofilms are the predominate mode of growth for microbial communities—characterized by cellular attachment to a surface via a self-produced matrix and heterogeneous structure, often resulting in a primary growth front along the biofilm surface due to differential access to bulk nutrients (cite). This …

Hite: A Fast And Accurate Dynamic Boundary Adjustment Approach For Full-Length Transposable Element Detection And Annotation, Kang Hu, Peng Ning, Minghua Xu, You Zou, Jianye Chang, Xin Gao, Yaohang Li, Jue Ruan, Bin Hu, Jianxin Wang

Computer Science Faculty Publications

Recent advancements in genome assembly have greatly improved the prospects for comprehensive annotation of Transposable Elements (TEs). However, existing methods for TE annotation using genome assemblies suffer from limited accuracy and robustness, requiring extensive manual editing. In addition, the currently available gold-standard TE databases are not comprehensive, even for extensively studied species, highlighting the critical need for an automated TE detection method to supplement existing repositories. In this study, we introduce HiTE, a fast and accurate dynamic boundary adjustment approach designed to detect full-length TEs. The experimental results demonstrate that HiTE outperforms RepeatModeler2, the state-of-the-art tool, across various species. Furthermore, …

Assessing Tropical Mammal Diversity And Distribution Using Noninvasive Methods, Tiff L. Degroot

Dissertations, Master's Theses and Master's Reports

Central African tropical forests are rich in biodiversity and home to some of Earth’s most threatened mammals. However, mammals in the region are under increasing threat from habitat loss and degradation, coupled with an increased demand for wild meat. To conserve mammals, wildlife managers and community-led conservation efforts must understand the distribution and diversity of mammal communities. However, funding and logistical challenges make contemporary survey methods, e.g. ground surveys, difficult and expensive. Noninvasive methods allow efficient mammal diversity surveys with minimal field effort. Here, we use camera trapping and invertebrate-derived environmental DNA (“iDNA”) to assess mammal diversity and distribution in …

Revision Of The Elongatus And Pecki Species Groups Of Anillinus Casey, 1918 (Coleoptera: Carabidae: Trechinae: Anillini), With Four New Species And Notes On Anillinus Turneri Jeannel, 1963, Curt W. Harden, Michael S. Caterino

Insecta Mundi

The small, eyeless beetles of the genus Anillinus Casey (Coleoptera: Carabidae: Trechinae: Anillini) comprise a diverse, ubiquitous, but poorly known component of insect biodiversity in the southeastern United States. Their limited dispersal capabilities make them ideal subjects for biogeography, but taxonomic problems and undescribed species diversity hamper such studies. In this paper, we redescribe four enigmatic species, Anillinus docwatsoni Sokolov and Carlton, Anillinus elongatus Jeannel, Anillinus pecki Giachino, and Anillinus turneri Jeannel, and consider their relationships. The elongatus species group is revised, with descriptions of four newly discovered species, Anillinus arenicollis Harden and Caterino, new species, Anillinus montrex Harden …

Synopsis Of The Subfamily Prosympiestinae In New Zealand (Heteroptera: Aradidae), Marie-Claude Larivière, André Larochelle

Insecta Mundi

The subfamily Prosympiestinae (Heteroptera: Aradidae) is revised for New Zealand. Three genera and thirteen species are recognized.

Five species are described as new: Neadenocoris centralis Larivière and Larochelle new species, Neadenocoris hoarei Larivière and Larochelle new species, Neadenocoris northlandicus Larivière and Larochelle new species, Neadenocoris pseudovatus Larivière and Larochelle new species, Neadenocoris wellingtonensis Larivière and Larochelle new species.

One new synonymy is established: Neadenocoris reflexus Usinger and Matsuda, 1959 becomes a junior synonym of Neadenocoris acutus Usinger and Matsuda, 1959.

A revision of all taxa is provided. Descriptions, identification keys, illustrations of male parandria, habitus …

Five Unusual New Species Of Rhyparus Westwood, 1845 From Mexico And Central America (Coleoptera: Scarabaeidae: Aphodiinae: Rhyparini), Paul E. Skelley, Andrew B. T. Smith

Insecta Mundi

Five new species of Rhyparus Westwood, 1845 (Coleoptera: Scarabaeidae: Aphodiinae: Rhyparini) are described: R. cucullatus Skelley and Smith from Guatemala, R. hexadentatus Skelley and Smith from Mexico and Guatemala, R. loughlini Skelley and Smith from Mexico, R. platypygus Skelley and Smith from Guatemala and Honduras, and R. pteronellus Skelley and Smith from Mexico. A description, diagnosis, images, and distributional map are presented for each species.

New Synonym Of Attagenus Tigrinus (Fabricius, 1792) (Coleoptera: Dermestidae: Attageninae), Graham J. Holloway, Andreas Herrmann

Insecta Mundi

The Attagenus bifasciatus species complex (Coleoptera: Dermestidae: Attageninae) surrounds the Mediterranean and extends into Asia. Several species are recognised but all of them are very similar to each other, and brief, old descriptions do not help to distinguish among them. Here the holotype A. tigrinus (Fabricius) and a syntype series of A. bifasciatus rossii Ganglbauer (subsequently raised to A. rossii) all collected from Italy were dissected to facilitate genital examination. From this genitalic study, Attagenus rossii is placed as a new synonym of A. tigrinus.

Can Edna Be Used To Locate Shawnee Hills Cavefish Forbesichthys Papilliferus?, Megan Brandt, Timothy Spier Phd, Gary Zeruth Phd

Murray State Theses and Dissertations

Traditional stream fish sampling methods, such as seining and electrofishing, are time consuming, expensive, and limited to short stretches of stream. However, the analysis of environmental DNA (eDNA) from water samples promises to be a quick, inexpensive method for detecting fish. The streams of the Land Between the Lakes Recreational Area (LBL) are unique, undisturbed streams which contain many interesting fish species for which little information exists. One such rare species is the Shawnee Hills Cavefish Forbesichthys papilliferus, which is known to exist in a few LBL streams. However, the complete distribution of the Shawnee Hills Cavefish in LBL …

Interactions Between New Zealand Mud Snails (Potamopyrgus Antipodarum) And Toxic Cyanoabacteria (Anabaena) In Baduwa’T (Mad River), Humboldt County, California, Cecilia F. Kennelly

Cal Poly Humboldt theses and projects

Invasive species in freshwater systems are circulated around the globe, wreaking havoc on natural communities. The New Zealand mud snail (Potamopyrgus antipodarum) is a very successful aquatic invader that has established populations in freshwater streams, lakes, and rivers around the globe. The goal of this project was to evaluate the interactions of invasive New Zealand mud snails (NZMS) and toxic cyanobacteria Anabaena in the Mad River in Humboldt County, California. These two species of concern are found in similar habitats along the river, but their whether NZMS consume Anabaena or affect toxin production is unknown. First, I conducted …

State Of Coastal And Marine Resources: Sablayan, Occidental Mindoro, Ma Celina J. Añonuevo, Jemelyn Grace P. Baldisimo, Denmark B. Racamara, Mary Joyce P. Velos, Joseph Benedict T. Garcia, Frederico B. Sabban, Joey P. Cabasan, Rhea Mae Luciano, Darryl Anthony Valiño, Lovely Joy Heyres, Hazel O. Arceo

Biological Sciences Faculty Publications

[Introduction] Sablayan, situated on the western side of Mindoro Island facing the WPS (12.8564° N, 120.9101° E), is a first-class municipality in the province of Occidental Mindoro with a total land area of 2,188.8km² that is divided into 22 barangays, nine of which are along the coast. The coastline stretches for 115 km, with municipal waters covering approximately 750,000 km² (LGU-Sablayan 2008).

The Apo Reef Natural Park, one of its most prominent features, is located approximately 33 km off the coast (Figure 2.9-1) The Apo Reef Natural Park is a protected coral reef system under presidential proclamation 868 (1996) encompassing …

Diet And Population Genomics Of River Otters (Lontra Canadensis) In West Virginia, Eden Grace Nitza

Graduate Theses, Dissertations, and Problem Reports (ETD)

North American river otters (Lontra canadensis), hereafter, otters, are apex predators in aquatic ecosystems across Appalachia, and thus have important impacts on their ecosystems such as food web regulation, nutrient cycling, and reducing the impacts of invasive species. Otters were extirpated from most of Appalachia, including all of West Virginia, by the mid-1900’s due to habitat destruction and overharvest. The West Virginia Division of Natural Resources (WVDNR) began an otter reintroduction program in 1984 which translocated approximately 250 otters into the state by 1997. This reintroduction program was largely considered successful, and a regulated harvest season was opened …