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2021

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Articles 12751 - 12780 of 13345

Full-Text Articles in Life Sciences

Towards Digestible Digital Health Solutions: Application Of A Health Literacy Inclusive Development Framework For Peripartum Depression Management Jan 2021

Towards Digestible Digital Health Solutions: Application Of A Health Literacy Inclusive Development Framework For Peripartum Depression Management

Faculty, Staff and Student Publications

Women of low income and education have lower levels of peripartum depression (PPD) literacy, limiting their ability to recognize symptoms and make informed healthcare decisions. Existing digital solutions and underlying development frameworks for PPD lack an integrative approach addressing health literacy and related disparities. Therefore, we develop an integrative framework for digital content engineering in PPD self-management consisting of (a) user needs analysis, (b) inclusion of eHealth literacy principles (science and health literacy), and (c) mapping user needs to the Behavioral Intervention Technology model. Results revealed that perinatal women seeking mental health care prefer information in multisensory formats, and knowledge …

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Cross-Vendor Ct Image Data Harmonization Using Cvh-Ct, Gary Yeeming Ge, Jin Chen Jan 2021

Cross-Vendor Ct Image Data Harmonization Using Cvh-Ct, Gary Yeeming Ge, Jin Chen

Faculty, Staff and Student Publications

While remarkable advances have been made in Computed Tomography (CT), most of the existing efforts focus on imaging enhancement while reducing radiation dose. How to harmonize CT image data captured using different scanners is vital in cross-center large-scale radiomics studies but remains the boundary to explore. Furthermore, the lack of paired training image problem makes it computationally challenging to adopt existing deep learning models. We propose a novel deep learning approach called CVH-CT for harmonizing CT images captured using scanners from different vendors. The generator of CVH-CT uses a self-attention mechanism to learn the scanner-related information. We also propose a …

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Large-Scale Variation In Wave Attenuation Of Oyster Reef Living Shorelines And The Influence Of Inundation Duration, Rebecca L. Morris, Megan K. La Peyre, Bret M. Webb, Danielle A. Marshall, Donna M. Bilkovic, Just Cebrian, Giovanna Mcclenachan, Kelly M. Kibler, Linda J. Walters, David Bushek, Eric L. Sparks, Nigel A. Temple, Joshua Moody, Kory Angstadt, Joshua Goff, Maura Boswell, Paul Sacks, Stephen E. Swearer Jan 2021

Large-Scale Variation In Wave Attenuation Of Oyster Reef Living Shorelines And The Influence Of Inundation Duration, Rebecca L. Morris, Megan K. La Peyre, Bret M. Webb, Danielle A. Marshall, Donna M. Bilkovic, Just Cebrian, Giovanna Mcclenachan, Kelly M. Kibler, Linda J. Walters, David Bushek, Eric L. Sparks, Nigel A. Temple, Joshua Moody, Kory Angstadt, Joshua Goff, Maura Boswell, Paul Sacks, Stephen E. Swearer

Civil & Environmental Engineering Faculty Publications

One of the paramount goals of oyster reef living shorelines is to achieve sustained and adaptive coastal protection, which requires meeting ecological (i.e., develop a self-sustaining oyster population) and engineering (i.e., provide coastal defense) targets. In a large-scale comparison along the Atlantic and Gulf coasts of the United States, the efficacy of various designs of oyster reef living shorelines at providing wave attenuation was evaluated accounting for the ecological limitations of oysters with regards to inundation duration. A critical threshold for intertidal oyster reef establishment is 50% inundation duration. Living shorelines that spent less than half of the time ( …

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Summer Research Fellowship Project Descriptions 2021, Clark Science Center's Summer Research Fellows Program Jan 2021

Summer Research Fellowship Project Descriptions 2021, Clark Science Center's Summer Research Fellows Program

SURF Abstracts (Women in Science)

A summary of research done by Smith College’s 2021 Summer Research Fellowship (SURF) Program participants. Ever since its 1967 start, SURF has been a cornerstone of Smith’s science education. Supervised by faculty mentor-advisors drawn from the Clark Science Center and connected to its eighteen science, mathematics, and engineering departments and programs and associated centers and units. At summer’s end, SURF participants were asked to summarize their research experiences for this publication.

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Differential Patterns Of Microbiota Recovery In Symbiotic And Aposymbiotic Corals Following Antibiotic Disturbance, Shavonna M. Bent, Carolyn A. Miller, Koty H. Sharp, Colleen M. Hansel, Amy Apprill Jan 2021

Differential Patterns Of Microbiota Recovery In Symbiotic And Aposymbiotic Corals Following Antibiotic Disturbance, Shavonna M. Bent, Carolyn A. Miller, Koty H. Sharp, Colleen M. Hansel, Amy Apprill

Arts & Sciences Faculty Publications

Microbial relationships are critical to coral health, and changes in microbiomes are often exhibited following environmental disturbance. However, the dynamics of coral-microbial composition and external factors that govern coral microbiome assembly and response to disturbance remain largely uncharacterized. Here, we investigated how antibiotic-induced disturbance affects the coral mucus microbiota in the facultatively symbiotic temperate coral Astrangia poculata, which occurs naturally with high (symbiotic) or low (aposymbiotic) densities of the endosymbiotic dinoflagellate Breviolum psygmophilum. We also explored how differences in the mucus microbiome of natural and disturbed A. poculata colonies affected levels of extracellular superoxide, a reactive oxygen species thought to …

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Testosterone Amplifies The Negative Valence Of An Agonistic Gestural Display By Exploiting Receiver Perceptual Bias, Nigel K. Anderson, Martina Grabner, Lisa A. Mangiamele, Doris Preininger, Matthew J. Fuxjager Jan 2021

Testosterone Amplifies The Negative Valence Of An Agonistic Gestural Display By Exploiting Receiver Perceptual Bias, Nigel K. Anderson, Martina Grabner, Lisa A. Mangiamele, Doris Preininger, Matthew J. Fuxjager

Biological Sciences: Faculty Publications

Many animals communicate by performing elaborate displays that are incredibly extravagant and wildly bizarre. So, how do these displays evolve? One idea is that innate sensory biases arbitrarily favour the emergence of certain display traits over others, leading to the design of an unusual display. Here, we study how physiological factors associated with signal production influence this process, a topic that has received almost no attention. We focus on a tropical frog, whose males compete for access to females by performing an elaborate waving display. Our results show that sex hormones like testosterone regulate specific display gestures that exploit a …

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Current Recommendations For Lower Body Aerobic Exercise In Chronic Unilateral Stroke - A Systematic Review, Jordan N. Brown Jan 2021

Current Recommendations For Lower Body Aerobic Exercise In Chronic Unilateral Stroke - A Systematic Review, Jordan N. Brown

College of Graduate Studies: Theses & Dissertations

Background: Chronic stroke patients (i.e., > six months since the onset of stroke) continue to experience persistent gait complications. Once formal physical therapy concludes, exercise professionals can implement exercise interventions designed to improve quality of life and reduce risk of secondary stroke. This systematic review aimed to evaluate whether lower-body aerobic exercise transferred to gait improvements in chronic unilateral stroke. Methods: An electronic search of the following databases were undertaken: MEDLINE, CINHAL, Ovid, and SPORTdiscus. Two independent reviewers selected articles using predetermined inclusion criteria: adults (i.e., >18 years old) who suffered from a chronic unilateral stroke. Additionally, all included studies were …

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Using Genetic Approaches To Understand Tumorigenesis In Drosophila, Shawna Defreitas Jan 2021

Using Genetic Approaches To Understand Tumorigenesis In Drosophila, Shawna Defreitas

College of Graduate Studies: Theses & Dissertations

The large number of conserved molecular and signaling pathways between Drosophila melanogaster and humans, makes Drosophila an effective model organism to better understand human diseases, including cancers. Previous studies by clinicians and researchers have identified PTEN, BRCA2, P53, NF1, and RB1 as key mutational drivers in High Grade Serous Ovarian Cancer (HGSOC), the most malignant form of ovarian cancer in humans. The objective of this study was to develop a tumor model in the follicle cell epithelium of the Drosophila ovary and to use immunohistochemistry to study the molecular mechanisms behind tumor development. First, the Drosophila …

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Habitat Use Of Wintering Henslow's Sparrows (Centronyx Henslowii) In Power Line Right-Of-Ways, Abigail W. Dwire Jan 2021

Habitat Use Of Wintering Henslow's Sparrows (Centronyx Henslowii) In Power Line Right-Of-Ways, Abigail W. Dwire

College of Graduate Studies: Theses & Dissertations

Habitat loss and degradation are the leading causes of grassland bird declines worldwide. The Henslow’s Sparrow (Centronyx henslowii; hereafter HESP) is a grassland bird species of conservation concern that has historically relied on the herbaceous ground-layer of longleaf pine savannas and similar habitats in the southeastern U.S. for food and shelter in the winter. However, due to human development, alterations of habitat, and fire suppression, only fragments of these habitats remain. Over the last decade, surveys have annually documented HESPs using power line right-of-ways (hereafter, ROWs) at several sites in the coastal plain of Georgia as alternative habitat for …

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Naturally Occurring Compounds With Larvicidal Activity Against Malaria Mosquitoes, Trizah K. Milugo, David P. Tchouassi, Reginald A. Kavishe, Rhoel R. Dinglasan, Baldwyn Torto Jan 2021

Naturally Occurring Compounds With Larvicidal Activity Against Malaria Mosquitoes, Trizah K. Milugo, David P. Tchouassi, Reginald A. Kavishe, Rhoel R. Dinglasan, Baldwyn Torto

All Peer-Reviewed Publications

Female Anopheles mosquitoes transmit Plasmodium parasites that cause human malaria. Currently, vector control is the most widely deployed approach to reduce mosquito population and hence disease transmission. This relies on use of insecticide-based interventions including Long-lasting Insecticide-treated Nets (LLINs) and Indoor Residual Spraying (IRS) where scale-up has contributed to a dramatic decline in malaria deaths and morbidity over the past decade. Challenges to their effective use include the emergence and spread of insecticide resistance by malaria vector populations coupled with the inability to curb outdoor transmission. Under these situations, use of larvicides through larval source management (LSM) can complement these …

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The Importance Of Store Hygiene For Reducing Post-Harvest Losses In Smallholder Farmers’ Stores: Evidence From A Maize-Based Farming System In Kenya, Kobia J. Makinya, John M. Wagacha, Judith A. Odhiambo, Paddy Likhayo, Kukom Edoh-Ognakossan, Tadele Tefera, Adebayo Abass, Christopher M. Mutungi Jan 2021

The Importance Of Store Hygiene For Reducing Post-Harvest Losses In Smallholder Farmers’ Stores: Evidence From A Maize-Based Farming System In Kenya, Kobia J. Makinya, John M. Wagacha, Judith A. Odhiambo, Paddy Likhayo, Kukom Edoh-Ognakossan, Tadele Tefera, Adebayo Abass, Christopher M. Mutungi

All Peer-Reviewed Publications

Knowledge of the role of hygiene in reducing food loss in farm stores is limited among extensionists, researchers, and farmers. Store hygiene practices during post-harvest handling and storage of maize were assessed using a cross-sectional survey of 342 farmers, with regular follow-up of 40 farmers’ stores over seven months to measure losses caused by insects, and to score the hygiene levels using a standard checklist. Fractional Response Model was used to evaluate the associations between hygiene practices and the losses. Farmers stored their produce in sacks (98.2%) kept in outside granaries (60.1%), or rooms in dwelling houses (39.9%). Co-storage with …

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Assessing And Understanding Non-Responsiveness Of Maize And Soybean To Fertilizer Applications In African Smallholder Farms, Dries Roobroeck, Cheryl A. Palm, Generose Nziguheba, Ray Weil, Bernard Vanlauwe Jan 2021

Assessing And Understanding Non-Responsiveness Of Maize And Soybean To Fertilizer Applications In African Smallholder Farms, Dries Roobroeck, Cheryl A. Palm, Generose Nziguheba, Ray Weil, Bernard Vanlauwe

All Peer-Reviewed Publications

Use of mineral fertilizers is essential to enhance crop productivity in smallholder farming systems of Sub-Saharan Africa, but various studies have reported ‘non-responsiveness’ where application of inorganic fertilizers does not lead to satisfactory yield gains. This phenomenon is not well defined nor are its extent and causes well understood. In order to close these knowledge gaps, we assessed the effects of commonly recommended nitrogen (N), phosphorus (P) and/or potassium (K) fertilizer inputs on maize grain and soybean production on farmer fields across prevalent land slope and/or soil texture gradients (2 × 2 matrix) in four agroecosystems over two growing seasons. …

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Affordable Processing Of Edible Orthopterans Provides A Highly Nutritive Source Of Food Ingredients, Forkwa Tengweh Fombong, John Kinyuru, Jeremiah Ng’Ang’A, Monica Ayieko, Chrysantus Mbi Tanga, Jozef Vanden Broeck, Mik Van Der Borght Jan 2021

Affordable Processing Of Edible Orthopterans Provides A Highly Nutritive Source Of Food Ingredients, Forkwa Tengweh Fombong, John Kinyuru, Jeremiah Ng’Ang’A, Monica Ayieko, Chrysantus Mbi Tanga, Jozef Vanden Broeck, Mik Van Der Borght

All Peer-Reviewed Publications

Edible orthopterans (grasshoppers, crickets, and locusts) are major delicacies, especially across sub-Saharan Africa. Their promotion as food ingredients is increasingly gaining momentum. This study evaluates the nutritional profiles of three widely consumed orthopterans: Gryllus bimacu-latus, Locusta migratoria, and Schistocerca gregaria after blanching and oven-drying. All three species had high protein (65.3, 54.2, and 61.4% on a dry matter (DM) basis for G. bimaculatus, L. migratoria, and S. gregaria, respectively) and fat contents. Oleic (22.9–40.8%) and palmitic (26.1–43.0%) were the two most abundant fatty acids. All essential amino acids (in mg/100 g protein) were present, with glutamic acid (120–131), alanine (90.2–123), …

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Fabrication And Characterization Of Agarwood Extract-Loaded Nanocapsules And Evaluation Of Their Toxicity And Anti-Inflammatory Activity On Raw 264.7 Cells And In Zebrafish Embryos, Eman Ramadan, Manar A. Eissa, Noha Badawi Jan 2021

Fabrication And Characterization Of Agarwood Extract-Loaded Nanocapsules And Evaluation Of Their Toxicity And Anti-Inflammatory Activity On Raw 264.7 Cells And In Zebrafish Embryos, Eman Ramadan, Manar A. Eissa, Noha Badawi

Pharmacy

Aquilaria malaccensis has been traditionally used to treat several medical disorders including inflammation. However, the traditional claims of this plant as an anti-inflammatory agent has not been substantially evaluated using modern scientific techniques. The main objective of this study was to evaluate the anti-inflammatory effect of Aquilaria malacensis leaf extract (ALEX-M) and potentiate its activity through nano-encapsulation. The extract-loaded nanocapsules were fabricated using water-in-oil-in-water (w/o/w) emulsion method and characterized via multiple techniques including DLS, TEM, FTIR, and TGA. The toxicity and the anti-inflammatory activity of ALEX-M and the extract-loaded nanocapsules (ALEX-M-PNCs) were evaluated in-vitro on RAW 264.7 macrophages …

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A Survey Of Opportunistic Fungi In The Portsmouth, Nh Region, Chloe E. Richard Jan 2021

A Survey Of Opportunistic Fungi In The Portsmouth, Nh Region, Chloe E. Richard

Honors Theses and Capstones

Opportunistic mycoses are caused by ubiquitous fungi that we encounter daily. This study identified the most common opportunistic fungi in a local area during the current winter season. A survey of fungi was conducted in the Portsmouth, New Hampshire region by taking environmental samples from both indoor and outdoor locations. The samples were then cultured and identified using colony morphology, microscopic characteristics, and biochemical testing. Despite the cold weather, the results showed that fungal species are still prevalent outdoors, with the most variation in single samples coming from areas with exposed soil and decaying vegetation, while less fungal presence was …

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Effects Of The Air Quality In Equine Stable Environments On The Respiratory Health And Allergy Response Of Human Personnel: A Review, Maeve Hannah Perrin Jan 2021

Effects Of The Air Quality In Equine Stable Environments On The Respiratory Health And Allergy Response Of Human Personnel: A Review, Maeve Hannah Perrin

Honors Theses and Capstones

Many studies have evaluated the impact of poor stable air quality on equine respiratory health and respiratory illness in horses. Many factors contribute to poor air quality conditions in the equine stable environment, including ventilation rates, humidity levels, presence of noxious gases, rate of fungal spore production, and level of airborne organic and inorganic dust particles. While the implications of poor air quality for equine health are well-documented, far less is known about how air quality impacts human stable personnel. This literature review seeks to evaluate the implications of poor equine stable air quality on the respiratory health and allergic …

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Roles Of Non-Frankia Bacteria In Root Nodule Formation And Function In Alnus Sp., Kelsey Christine Mercurio Jan 2021

Roles Of Non-Frankia Bacteria In Root Nodule Formation And Function In Alnus Sp., Kelsey Christine Mercurio

Honors Theses and Capstones

Plant roots are home to a wide variety of beneficial microbes; understanding and optimizing plant-microbe interactions may be critical to enhance global food security in a sustainable, equitable way. With the help of their nitrogen-fixing bacterial partner, Frankia, actinorhizal plants form symbiotic root nodules and play important roles in agroforestry and land reclamation. However, Frankia does not live alone in nodules, and the other microbial residents may contribute to nodule formation and function. We collected root nodules from alder trees (Alnus sp.) in 2018 and 2019, then isolated DNA and individual bacterial strains to characterize the nodule microbial …

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Mimicking The Effect Of Prolactin On Stat3/Stat5 Activity In Breast Cancer, Jennifer N. Barbuto, Sarah R. Walker Jan 2021

Mimicking The Effect Of Prolactin On Stat3/Stat5 Activity In Breast Cancer, Jennifer N. Barbuto, Sarah R. Walker

Honors Theses and Capstones

Signal transducers and activators of transcription (STAT) 3 and 5 are commonly constitutively activated in breast cancer. STAT5 can outcompete STAT3 and reduce cell proliferation and metastasis. STAT5 activation is stimulated by prolactin, a natural hormone that can be harmful at high levels. The aim of this study is to identify some possible previously developed drugs that mimic the effect of prolactin and STAT5 without the added risk in MDA-MB231 breast cancer cells. Using the CLUE database query app and STAT5 up- and downregulation signatures, three drugs (X, K, and M) were chosen based on their similarity in signatures to …

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Sars-Cov-2: An Investigation On Mutagenicity And Its Effects On Infectivity And Mortality, Tyler Elliott Silverwood Jan 2021

Sars-Cov-2: An Investigation On Mutagenicity And Its Effects On Infectivity And Mortality, Tyler Elliott Silverwood

Honors Theses and Capstones

SARS-CoV-2, the etiological agent of the COVID-19 pandemic, has rapidly become a worldwide public health concern. Classified as a betacoronavirus, it is the third human coronavirus (HCoV) to emerge in the 21st century that causes severe disease, alongside SARS-CoV and MERS-CoV. The genome consists of open reading frames encoding accessory proteins and four structural proteins, including the spike protein which is a key determinant of host cell tropism. Mutations within the genome, particularly the spike gene, have been linked in-vitro to increased binding affinity to the human receptor angiotensin-converting enzyme 2 (hACE2), increased fitness in human hosts, and immune evasion. …

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Occurrence Of Pulmonary Arteritis With Lungworm Infections In Gray Seals From New England, 2013-2020, Jillian R. Broadhurst, Inga Sidor Dvm, Ms, Dacvp Jan 2021

Occurrence Of Pulmonary Arteritis With Lungworm Infections In Gray Seals From New England, 2013-2020, Jillian R. Broadhurst, Inga Sidor Dvm, Ms, Dacvp

Honors Theses and Capstones

Gray seals (Halichoerus grypus) are a common pinniped species in New England coastal waters. Parasitic infection is an important cause of mortality for this species, and lungworm species are frequently implicated in cases of respiratory infection, especially in pups and weanling seals. The most common of these is Otostrongylus circumlitus, a large nematode found in the bronchi and bronchioles of affected seals. The full life cycle is unknown but its presence in lungs and sometimes pulmonary arteries suggests that migration via arterial circulation occurs. Signs and microscopic findings are widely variable; our cases included dyspnea, bloody mucoid …

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Elucidation Of Multi-Origin Inula Helenium L. For Antimicrobial Activity And Heavy Metal Profiling As An Exemplar For The Use And Regulation Of Plants As Antibiotics., Ciara Ruth Kenny Jan 2021

Elucidation Of Multi-Origin Inula Helenium L. For Antimicrobial Activity And Heavy Metal Profiling As An Exemplar For The Use And Regulation Of Plants As Antibiotics., Ciara Ruth Kenny

Theses

An impending post-antibiotic era looms, thus new sources of therapeutic chemical entities are crucial to sustain effective antimicrobial chemotherapy worldwide. Plant natural products are a source of accessible, structurally diverse compounds that provide therapeutic potential. The pharmacological applications of plants in medicine can be guided by the attestation of traditional use or the application of this knowledge to uncover new leads in the drug discovery process. The range of modified in vitro methods commonly used to investigate preclinical antimicrobial efficacy of plant-derived natural products, and the associated limitations and challenges in the provision of new antimicrobial drugs from plants is …

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Investigating The Antioxidant, Immunomodulatory And Anti-Obesogenic Propertiesof Novel Bsg-Derived Extracts And Their Potential As Ingredients In Functional Foods For Older Adults, Suzanne O Brien Jan 2021

Investigating The Antioxidant, Immunomodulatory And Anti-Obesogenic Propertiesof Novel Bsg-Derived Extracts And Their Potential As Ingredients In Functional Foods For Older Adults, Suzanne O Brien

Theses

Brewer’s Spent Grain (BSG) represents a substantial waste product of the brewing industry, with 39 million tonnes generated globally every year. To date the primary use of BSG is as animal feed but there is significant interest in identifying alternative uses for this agro-industry by-product. BSG is rich in protein and fibre and is known to contain health-promoting bioactive compounds, thus one application would be in the area of functional foods. People are living longer and as the older adult population continues to increase globally so too is the prevalence of age-related chronic conditions. Diet plays an essential role in …

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Optimisation Of Grass Measurement Technologies Through Field Experimentation And Numerical Simulation Methods, Darren Joseph Murphy Jan 2021

Optimisation Of Grass Measurement Technologies Through Field Experimentation And Numerical Simulation Methods, Darren Joseph Murphy

Theses

Maximising pasture utilisation through optimal grassland management is vital in terms of ensuring the economic sustainability and mitigating the environmental impact of both Irish and global pasture-based livestock production. Frequent and accurate measurement of grass quantity and quality is one of the main methods of maximising grass production and utilisation on pasture-based farms. The most prominent grass measurement tool used on Irish pasture is the rising plate meter (RPM), however, there are a range of issues with this method including operator bias, precision and difficulties in accounting for spatial variation. Currently, there is no definitive protocol for grass measurement which …

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Predicting, Monitoring And Controlling The Growth Of Listeria In Complex Food Matrices, Laura Mary Nyhan Jan 2021

Predicting, Monitoring And Controlling The Growth Of Listeria In Complex Food Matrices, Laura Mary Nyhan

Theses

Listeria monocytogenes is a foodborne pathogen which is a significant challenge in food production, particularly for ready-to-eat (RTE) products. Incidence of Listeria in RTE foods can be reduced by the application of intelligent combinations of preservative factors or hurdles, while data quantifying the efficacy of hurdle combinations can be exploited and used in the area of predictive microbiology. Traditional culture-based techniques, such as viable plate counts, are commonly used to monitor the growth/survival of microorganisms in foods, however these methods are tedious, time-consuming and due to their destructive nature, are associated with low reproducibility and high variability. Therefore, rapid, non-invasive …

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Molecular Responses To Catastrophic Molting In A Wild Marine Mammal, Anna Keith Jan 2021

Molecular Responses To Catastrophic Molting In A Wild Marine Mammal, Anna Keith

University of the Pacific Theses and Dissertations

While most mammals shed their hair and skin either continuously or seasonally, northern elephant seals (Mirounga angustirostris) undergo an annual catastrophic molt, in which they shed their entire fur and underlying skin layer in the span of just three weeks. Due to the energetic and thermoregulatory constraints of molting and the large distances between their coastal rookeries and foraging grounds, elephant seals must remain on land and fast for the duration of their molt. Previous studies of molting northern elephant seals have examined endocrine and metabolic adjustments to fasting, but not the molecular processes underlying molting. We examined changes in …

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Development Of Linked-Domain Protein Inhibitors Of The E2-Conjugating Enzyme Ube2d, Anneroos E. Nederstigt Jan 2021

Development Of Linked-Domain Protein Inhibitors Of The E2-Conjugating Enzyme Ube2d, Anneroos E. Nederstigt

University of the Pacific Theses and Dissertations

In most eukaryotic organisms, the ubiquitination pathway is one of the most important and versatile signaling systems in use. It is integral to processes such as protein degradation and homeostasis, DNA repair cell cycle regulation, signaling and regulation, epigenetics, and many more. Ubiquitin (Ub) is a short polypeptide of 8.6 kDa, 76 residues that functions as a reversible post-translation modification (PTM). It furthermore contains 7 different lysine residues (K6, K11, K27, K29, K33, K48, K63), all of which can form isopeptide linkages with one another to link individual Ub moieties to form unique polyUb chains onto substrates. The type of …

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Clarifying Patterns In Host Plant Use By Adelpha Butterflies (Nymphalidae: Limenitidinae), Karina Torres Jan 2021

Clarifying Patterns In Host Plant Use By Adelpha Butterflies (Nymphalidae: Limenitidinae), Karina Torres

University of the Pacific Theses and Dissertations

The remarkable diversity of plant-feeding insects could be explained by the dynamics of their plant associations, where host plant shifts and specialization onto a small fraction of available plants may promote diversification. Neotropical Adelpha butterflies contain a large number of species, and previous work indicated the colonization of a novel host plant family (Rubiaceae) fueled its rapid diversification. However, accumulating host records indicate wide taxonomic host breadth at family level and below. Here, we categorize Adelpha diet breadth based on known host plant relationships across the Neotropics and from Costa Rica, Ecuador and Brazil. We also use a diet breadth …

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Evaluating The Impacts Of Dam Construction And Longshore Transport Upon Modern Sedimentation Within The Rio Grande Delta (Texas, U.S.A.), Samantha Moore, Elizabeth A. Heise, Marty Grove, Anthony Reisinger, Jude A. Benavides Jan 2021

Evaluating The Impacts Of Dam Construction And Longshore Transport Upon Modern Sedimentation Within The Rio Grande Delta (Texas, U.S.A.), Samantha Moore, Elizabeth A. Heise, Marty Grove, Anthony Reisinger, Jude A. Benavides

School of Earth, Environmental, & Marine Sciences Faculty Publications

The modern Rio Grande delta system has experienced a century of dam construction, water removal for irrigation and municipal use, and land use modifications that have dramatically reduced its sediment load. This study examines whether damming has sufficiently limited delivery of upstream sediment to permit locally eroded sources and/or littoral transport along the coast to influence the provenance signal of the Rio Grande delta. Changes in sediment provenance within the Rio Grande’s delta can be detected and quantified by measurement of detrital zircon Uranium–lead dating age distributions. Previous provenance studies indicate that modern Rio Grande river sand upstream of Falcon …

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Identification And Sequence Analysis Of Set Superfamily Genes In Hymenopteran Insects, Tanima Joshi Jan 2021

Identification And Sequence Analysis Of Set Superfamily Genes In Hymenopteran Insects, Tanima Joshi

Scripps Senior Theses

Post-translational chemical modifications of histones, the proteins that package DNA, are a key component of the “language” of epigenetics. SET (Suppressor of Variegation 39, Enhancer of Zeste, Trithorax) domain-containing proteins are crucial enzymes that establish histone methylations as a major part of the histone code. Studies using the fruit fly, Drosophila melanogaster, as a model organism have provided most of the known information on SET genes/protein diversity and function in insects. To expand our knowledge of this important protein family, I identified all SET domain-containing genes in a select group of insects belonging to the Hymenoptera order: wasps, bees, ants, …

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Global Coordination Between Gene Expression Processes In C. Crescentus, James Raymond Aretakis Jan 2021

Global Coordination Between Gene Expression Processes In C. Crescentus, James Raymond Aretakis

Wayne State University Dissertations

Gene expression is an essential process of all organisms which occurs in two steps, mRNA transcription, and translation and which is shut off by mRNA decay. For a bacterium to grow and divide, these steps need to be tuned to optimize the synthesis rates of thousands of proteins from their genes. Genome-wide experiments were used to determine the absolute transcription rates, mRNA degradation rates, and translation rates on a gene by gene basis in the model bacterium Caulobacter crescentus. This not only provides a system biology view of the organism’s gene expression resource allocation, but also provides a chance to …

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