Life Sciences Commons^™

An Analysis Of Demographic Disparities Associated With The Proposed U.S.-Mexico Border Fence In Cameron County, Texas, J. Gaines Wilson, Jude A. Benavides, E. Anthony Reisinger, Joseph Lemen, Zachary Hurwitz, Jessica Spangler, Karen Engle

School of Earth, Environmental, & Marine Sciences Faculty Publications

Introduction: The United States Department of Homeland Security (DHS) plans to install a fence along the U.S.-Mexico border by late December 2008. While much attention has been drawn to the environmental, social and political issues surrounding the fence, analysis of demographic data on the populations that will be directly affected has been limited. This paper utilizes geographic information systems (GIS) and U.S. Census Bureau data with the objective of understanding the underlying demographics in areas along the proposed Rio Grande Valley section of the border fence located in Cameron County, Texas.

Data and Methods: Demographic measures of income, education, …

Influence Of Fluvial Geomorphology On Fish Assemblage Structure Within An Agriculturally Impacted Watershed, Jeffrey D. Fore

Masters Theses

Warmwater stream fish assemblages are often considered limited by instream habitat availability. Thus, much current research has focused on determining habitat features that limit the abundance and persistence of stream fishes. These studies provide valuable information to managers who are concerned with increasing species abundance and persistence, but they may not provide information on the processes structuring the stream fish community. To address this issue, we hypothesized that stream geomorphology differed among stream sizes and types (i.e., channelized vs. unchannelized streams) and that the fish assemblages associated with each geomorphic type would be unique. Fish assemblages were sampled and geomorphic …

Long-Term Functional Trait Dynamics In Abandoned Agricultural Fields, Timothy A. Rye

Masters Theses

A fundamental question of plant succession is whether species within different successional stages differ in terms of functional traits as changes in community-level traits reflect changes in plant strategies over time. Although there are many studies that focus on that question, researchers have not studied the long-term dynamics of those traits within plant communities in depth. We used data from a 49-year study of old-field succession (the Buell-Small Succession Study) to assess the dynamics of important functional traits (height, seed mass, specific leaf area) and compared their dynamics among life forms and between native and non-native species. We assessed communitylevel …

Foraging Site Selection In Prairie Kingsnakes (Lampropeltis C. Calligaster): An Experimental Approach, Angela M. Fornell

Masters Theses

A critical component to a predator’s survival is the choice of foraging sites that yield enough predatory success to meet energetic demands. To elucidate cues used to select foraging sites, I examined foraging site selection in Prairie Kingsnakes (Lampropeltis c. calligaster), a generalist species whose foraging mode is flexible. My objectives were to determine: the pattern of foraging site selection; the importance of certain cues that kingsnakes use when selecting foraging sites; and, whether or not kingsnakes adjust their foraging patterns in response to alterations in the microhabitat. I tested subjects in a large experimental arena under several treatment conditions …

Terrestrial Macrofungi Of Old-Growth Prairie Groves, Vincent P. Hustad

Masters Theses

The purpose of this study was to evaluate and contrast the communities of terrestrial macrofungi of Brownfield and Trelease Woods, Champaign Co., IL; old-growth prairie groves isolated for> 120 years. This study represents the first known analysis of fungal communities in old-growth prairie grove ecosystems in the Midwestern United States, and provides an excellent opportunity to characterize the fungal biodiversity of established old-growth reference communities for comparisons with other sites, both local and distant. Fungal communities were sampled during the fall fruiting seasons of 2006 and 2007 using a plot frequency study of fungal abundance. Several estimators of species richness …

Correlating Phytoplankton Assemblages With Water Quality In Illinois Lakes And Reservoirs: Validating Models Based On Historical Data, Jason D. Allen

Masters Theses

In the last two decades management and monitoring efforts in freshwater systems has shifted from point source pollutants to non-point source pollutants and environmental modification. Long term, large scale sampling projects necessitated by such a shift often are infeasible due to logistical, cost, and time constraints.

In recent years fish and benthic macroinvertebrate indices of biological integrity (IBI's) have been used to survey the quality of flowing (lotic) water systems, which have drastically reduced sampling time and facilitated large scale monitoring projects. However, it is unlikely that these could be adapted to lentic systems. This study was undertaken in an …

The Impact Of Climate On The Leaf Characteristics Of Genus Fraxinus, Brian W. Craven

Masters Theses

Fraxinus (ash) has six species across eastern North America, five of which are found in Illinois (F. americana, F. pennsylvanica, F. nigra, F. quadrangulata, F. profimda). It is also threatened by the emerald ash borer (Agrilus planipennis) (BAB). Are climate differences across a north-south distance of 600 km great enough to create differences in the morphological characteristics of Fraxinus species? Studying latitudinal variation in the species of Fraxinus would reveal the impact of climate on the leaf characteristics of a genus of trees which extend over a considerable portion of the continent. The objectives of this study were to determine …

Evaluation Of The Oxalate-Consuming Activities Of Probiotic Microorganisms, Alexandra E.C. Baluka

Masters Theses

This study identifies the oxalate-consuming capabilities of mixtures of probiotic microorganisms, present as commercial probiotics, as well as in seventeen pure cultures of probiotic microorganisms. Probiotics are sold commercially as powders, tablets, and supplements of live microorganisms that, when taken in large amounts, confer a health benefit to the host. Increased levels of urinary oxalate coincide with the formation of kidney stones, so this study sought to identify organisms capable of oxalate consumption that could potentially be manufactured for those suffering from calcium oxalate kidney stones. This study determined that consumption of oxalate was not directly tied to active growth …

Mating Bias In The Red Imported Fire Ant, Solenopsis Invicta, Kendra Carroll

Masters Theses

The two social forms in the red imported fire ant, Solenopsis invicta, are believed to be governed by the expression of one specific gene. This gene, known as Gp-9, is responsible for the production of general protein-9, thought to be a pheromone binding protein. Among the social aspects thought to be controlled by this locus is reproduction. Many aspects of breeding within and between the two colonial forms have been investigated over the past years since in introduction of this species to the United States. In this study, several features of the currently accepted model were examined. Newlymated queens were …

Evaluating The Illinois Stream Valley Segment Model As An Effective Management Tool, Stephen S. Warrner

Masters Theses

Stream habitat assessment procedures have been used to monitor logical potential, habitat restoration, and determine anthropogenic impacts on streams. In the past, the Illinois Department of Natural Resources (IDNR) and the Illinois Natural History Survey (INHS) have determined which stream reaches to sample habitat quality based on historical data, accessibility, and whether or not a reach is representative of an area. To develop a consistent and unbiased procedure for choosing sampling locations, the IDNR and INHS have proposed a technique by which watersheds are divided into homogeneous stream segments called valley segments. Valley segments within each watershed are determined by …

Spatial And Ecological Patterns Of Tent Location In The Eastern Tent Caterpillar, Malacosoma Americana (Lepidoptera:Lasiocampidae), Jennifer Pleasant

Masters Theses

The eastern tent caterpillar, Malacosoma americanum (Fabricius) (Lepidoptera: Lasiocampidae) is a widely studied social caterpillar. The nests (i.e. tents) of the tent caterpillar are most frequently found on Black Cherry trees (Prunus serotina). However, dispersions of tents are often clumped with one cherry tree having five or more tent caterpillar nests in it and another cherry tree 3 meters away having only one nest, or none at all. I tried to determine why this happens. Because of the short field season, much of the research on the caterpillars has been done in the laboratory. I tried to determine host selection …

A Survey Of Carrion And Burying Beetles (Coleoptera:Silphidae) In Mchenry County, Illinois, David Suhrbur

Masters Theses

This study compared the occurrence of beetles in the family Silphidae using historical collection records with that of field collections from five different sites within McHenry County. The five sites include: Glacial Park, Woodstock, Silver Creek, Rush Creek, and Coral Woods. Historically, 11 known silphid species have been found in McHenry County, compared with seven species found during this study' collection period.

Percentages of silphid species at each site was calculated, as well as total number of individuals sampled, and two indices of diversity (Shannon-Weiner and Simpson's) were applied to both current and historical collection data. The historical collection (when …

The Neural Correlates Of Third-Party Punishment, Owen D. Jones, Joshua Buckholtz, Christopher L. Asplund, Paul E. Dux, David H. Zald, John C. Gore, Rene Marois

Vanderbilt Law School Faculty Publications

This article reports the discovery, from the first full-scale law and neuroscience experiment, of the brain activity underlying punishment decisions.

We used functional magnetic resonance imaging (fMRI) to measure brain activity of subjects as they read hypothetical scenarios about harm-causing protagonists and then decided whether to punish and, if so, how much.

The key variables were: a) presence or absence of excusing, justifying, or otherwise mitigating factors (such as acting under duress); and b) harm severity (which ranged from a stolen CD to a rape/murder/torture combination).

Findings include:

(1) Analytic and emotional brain circuitries are jointly involved, yet quite separately …

The Development Of A "Genetic Eyewitness" Profiling System For Low Template Forensic Specimens: Identification Of Novel Protein, Rna, And Dna Biomarkers, Erin Hanson

Electronic Theses and Dissertations

In many criminal investigations, valuable information regarding the physical appearance of suspected perpetrators or the time and order of events that transpired are provided by eyewitness accounts. However, the information obtained from eyewitnesses is often constrained by human recollection or subjective accounts and provides a biased description of the perpetrator's appearance or an inaccurate time line of events. Additionally, in numerous situations eyewitness accounts may not be available. An increasing reliance therefore is placed on the biological evidence recovered during criminal investigations to act as a silent witness, providing unbiased and scientific information that may aid in the resolution of …

Movement Patterns And Feeding Behavior Of The Limpet Tectura Testudinalis (Müller) Along The Mid-Maine Coast, Joshua Lord

Honors Theses

Tectura testudinalis is a limpet that lives in the mid-intertidal zone along the coast of Maine and grazes on a variety of encrusting algae. A previous study asserted that T. testudinalis preferred to feed and rest on the encrusting alga Clathromorphum circumscriptum and that this species of limpet displayed homing behavior. However, I show that T. testudinalis does not home or return to any specific substrate while resting. Conclusive evidence was found for nocturnal movement. I show that C. circumscriptum was the preferred food source for this limpet, closely followed by Hildenbrandia rubra, another encrusting alga. Field and lab experiments …

Evaluating Cancer Protein Identification From Mass Spectroscopy Data, Philip Hudson Williams

Theses and Dissertations

Early detection of ovarian cancer substantially increases patient survivability. Mass spectrometry data sets for the purpose of research into early detection methods have been funded by the National Ovarian Cancer Early Detection Program, gynecologic oncology clinic at Northwestern University Chicago IL, USA. Researchers have applied different machine learning methods for classification on several of the spectra data sets, (including the most recent produced on an ABI Hybrid Pulsar QqTOF instrument (Q-Star) mass spectrometer) for the purpose of predicting cancer. While identification of the proteins or metabolites within these spectra is not required for early detection, it would give a better …

Recovery And Restoration Of The Seagrass Halodule Wrightii After Boat Propeller Scar Damage In A Pole-Troll Zone In Mosquito Lag, Katherine Grablow

Electronic Theses and Dissertations

This study combined documentation of four boat propeller scar types in Halodule wrightii seagrass beds in Mosquito Lagoon, Florida with manipulative field experiments to document scar recovery times with and without restoration. Scar types ranged from the most severe scar type (Type 1) with trench formation which had no roots or shoots in the trench, to the least severe (Type 4) scars that had no depth, intact roots and shoots shorter than the surrounding canopy. For 110 measured existing scars, the frequency of each scar type was 56% for Type 1, 10% for Type 2, 7% for Type 3, and …

Prevalence And Severity Of Fibropapillomatosis In Juvenile Green Turtles (Chelonia Mydas) In Three Habitats On Florida's Eas, Kelly Borrowman

Electronic Theses and Dissertations

Fibropapillomatosis (FP) is a tumor-forming disease mainly found in juvenile green turtles (Chelonia mydas) inhabiting Florida's east coast. Despite increased research on the herpes virus that putatively causes it, long-term assessment is still needed of the distribution and severity of FP. Using the decades-long database compiled by the University of Central Florida Marine Turtle Research Group, I determined FP severity and distribution at three different sites: Indian River Lagoon (IRL), Sabellariid Worm Reef (SWR) and Trident Submarine Basin (TSB). Fibropapillomatosis occurred in > 50% of IRL turtles, 18% of SWR turtles and <1% of TSB turtles. Regression of FP tumors was correlated with its prevalence, i.e. when and where FP was common, tumor regression was common. The probability of a turtle being non-afflicted or mildly afflicted increased with both increasing straight-line carapace length (SCL) and increasing relative body condition (residuals of log body mass versus log SCL). Mean annual growth rates of IRL and SWR turtles did not vary with FP severity; however, mean annual growth rates in IRL (1.10 cm/y) were significantly higher than in SWR (1.05 cm/y) and TSB (1.04 cm/y). Annual apparent survival estimates for IRL and TSB turtles were 0.72 and 0.73, respectively, and were constant over time. Even with increased prevalence of FP, annual apparent survival estimates were constant and similar to survival estimates of juvenile green turtles in areas without FP. In IRL, survival rates among FP Categories 0, 1 and 2 were similar (0.74, 0.74 and 0.81 respectively) and lower only for FP Category 3 (0.63). Thus, while FP occurred in > 50% of turtles in some Florida east coast populations, …

Control Of Stomatal Formation In Arabidopsis Thaliana Inflorescence Stem, Nalini Odapalli

Electronic Theses and Dissertations

Stomata are cellular structures that control water loss and gas exchange through the plant epidermis. Stomata arise from special stem cells called meristemoids through a series of programmed asymmetric divisions that are controlled by cell signaling, or via multitude of regulatory pathways and intercellular communication between epidermal cells. In Arabidopsis thaliana, stomata are spaced non-randomly in the epidermis by cell-cell signaling of the receptor-like protein TOO MANY MOUTHS (TMM) as well as other proteins. Point mutation of the TMM gene prevents the development of stomata in some tissues like inflorescence stems. Investigation of tmm mutant stems showed that self-renewing stem …

Social Grouping Behaviors Of Captive Female Hippopotamus Amphibius, Tracy Blowers

Electronic Theses and Dissertations

Levels of sociality vary depending on the costs and benefits associated with grouping behavior. Grouping species form either ephemeral aggregations due to resource availability, or structured groups based on familiarity of individuals. Because there are different costs and benefits associated with different types of groups, it is important to understand more about group structure before making predictions about specific behaviors. Female Hippopotamus amphibius are known to aggregate in the wild but the true nature of their grouping behavior is still not understood. My objective was to determine if captive female hippos form either ephemeral aggregations or social groups. Behavioral data, …

The Endocytic Protein Numb Regulates App Metabolism And Notch Signaling: Implications For Alzheimer's Disease, George Kyriazis

Electronic Theses and Dissertations

Increased production of amyloid beta (A-beta) peptide, via altered proteolytic cleavage of amyloid protein precursor (APP), and abnormalities in neuronal calcium homeostasis play central roles in the pathogenesis of Alzheimer's disease (AD). Notch1, a membrane receptor that controls cell fate decisions during development of the nervous system, has been linked to AD because it is a substrate for the gamma-secretase protein complex in which mutations cause early-onset inherited AD. Numb is an evolutionarily conserved endocytic adapter involved in the internalization of transmembrane receptors. Mammals produce four Numb isoforms that differ in two functional domains, a phosphotyrosine-binding domain (PTB) and a …

Assessing And Modeling Mangrove Forest Dynamics Along The Temperate-Subtropical Ecotone In Eastern Florida, Susan Leitholf

Electronic Theses and Dissertations

Mangrove ecosystems are among the world's most endangered biomes; nearly one-half of the overall coverage is threatened by human activity, invasive species, and global climate change. Mangroves play an important ecosystem role through detrital production and by providing: fisheries and wildlife nursery habitat, shoreline protection, a sink for nutrients, carbon, and sediment. In addition to human activity, the Florida mangroves (Avicennia germinans, Laguncularia racemosa, and Rhizophora mangle) are being threatened by the invasive Brazilian pepper (Schinus terebinthifolius). This study was performed along a 261 km stretch of the east coast of Florida from Sebastian Inlet to the northern extent of …

Towards Greater Accuracy In Individual-Tree Mortality Regression, Clara Antón Fernández

Dissertations, Master's Theses and Master's Reports - Open

Background mortality is an essential component of any forest growth and yield model. Forecasts of mortality contribute largely to the variability and accuracy of model predictions at the tree, stand and forest level. In the present study, I implement and evaluate state-of-the-art techniques to increase the accuracy of individual tree mortality models, similar to those used in many of the current variants of the Forest Vegetation Simulator, using data from North Idaho and Montana. The first technique addresses methods to correct for bias induced by measurement error typically present in competition variables. The second implements survival regression and evaluates its …

Studies On The Rhizosphere Mycoflora Of Mangroves, Marium Tariq, Shahnaz Dawar, Fatima S. Mehdi

Turkish Journal of Botany

Rhizosphere soil of mangrove plants (Avicennia marina, Rhizophora mucronata, Aegiceras corniculatum, and Ceriops tagal) was collected from coastal areas. Almost all samples showed a sandy to sandy loam texture. pH of the soil samples ranged from 7 to 10 and water content ranged from 8% to 9%. In all, 18 species of fungi belonging to 11 genera were isolated from the rhizosphere soil of all the mangrove species by direct plating method, whereas 20 fungal species belonging to 11 genera were isolated by serial dilution. Results showed that the greatest number of fungi was isolated by serial dilution. The maximum …

Carbon Mineralization Of Ceratonia Siliqua L. Soils Under Different Temperature And Humidity Conditions, Emel Zengi̇n, Hüsni̇ye Aka Sağliker, Cengi̇z Darici

Turkish Journal of Botany

The aim of this study was to determine how carbon (C) mineralization of carob (Ceratonia siliqua L., Fabaceae) soils are affected by different temperatures (23 °C and 28 °C) and humidity [field capacity (FC), 80% and 60% of their field capacity] conditions in the laboratory. The carob soils were taken from Çukurova University campus in the eastern Mediterranean region of Turkey. C mineralization of all soils was determined using CO_{2} respiration method. The microbial activity increased together with temperature increases. The microbial activity in the soils humidified at the field capacity and 60% of it was statistically lower compared to …

The Flora Of Balıkdamı Wetland And Its Surroundings (Sivrihisar, Eskişehir - Turkey), Onur Koyuncu, Ebru Ataşlar, Süleyman Tokur, Meltem Erdi̇r Erten, Murat Ardiç

Turkish Journal of Botany

The present study involves the flora of Balıkdamı Wetland and its surroundings in Sivrihisar, Eskişehir, Turkey. This 2-year study (2002-2003) examined the plant samples collected in this region and determined that there are 51 families, as well as 250 taxa belonging to 173 genera (247 species, 1 subspecies, and 2 varieties). All of these taxa belong to the Angiosperms (201 Dicotyledons, 49 Monocotyledons) subdivision. The largest families are Brassicaceae (31), Poaceae (29), and Fabaceae (25) in terms of the number of species and subspecies included. Genera represented by the highest number of species are Alyssum L. (5), Centaurea L. (5), …

Zoological Label As Literary Form, Victor Fet

Biological Sciences Faculty Research

Nabokov’s work is seen through the unique concept of zoological labels and their language. A label, written by a young naturalist, is a concentrated source of information, detail, and “naming the unnamed”; it reflects three Aristotelian unities (place, time, action).

Interferon Alfacon 1 Inhibits Sars-Covinfection In Human Bronchial Epithelial Calu-3 Cells, Y. Kumaki, C. W. Day, M. K. Wandersee, B. P. Schow, J. S. Madsen, D. Grant, J. P. Roth, Donald F. Smee, L. M. Blatt, Dale L. Barnard

Animal, Dairy, and Veterinary Science Faculty Publications

The primary targets for SARS-CoV infection are the epithelial cells in the respiratory and intestinal tract. The angiotensin-converting enzyme 2 (ACE-2) has been identified as a functional receptor for SARS-CoV. ACE-2 has been shown to be expressed at the apical domain of polarized Calu-3 cells. In this report, interferon alfacon 1 was examined for inhibitory activities against SARS-CoV on human lung carcinoma epithelial Calu-3 cell line and the other three African green monkey kidney epithelial cell lines. Interferon alfacon 1 demonstrated significant antiviral activity in neutral red uptake assay and virus yield reduction assay. The data might provide an important …

Fast-Disintegrating Aceclofenac Tablets: Formulation Development Using Simplex Lattice, Garala Kevin C., Ekshinge Vinit, Jarag Ravindra, Shinde Anil J.

The Thai Journal of Pharmaceutical Sciences

The poor aqueous solubility of the drug results เท variable dissolution profile and hence poor bioavailability. The aim of present work was to show the effect of various super disintegrants on the disintegration time and in vitro drug release rate. ...

"A Global Assessment Of Freshwater Crab Diversity" , Darren Cj Yeo, Peter Kl Ng, Neil Cumberlidge, Celio Magalhães, Savel R. Daniels, Martha R. Campos

Journal Articles

No abstract provided.