Desert Hedgehog Is A Mammal-Specific Gene Expressed During Testicular And Ovarian Development In A Marsupial, William A. O'Hara

Master's Theses

Desert hedgehog (DHH) belongs to the hedgehog gene family that act as secreted intercellular signal transducers. DHH is an essential morphogen for normal testicular development and function in both mice and humans but is not present in the avian lineage. Like other hedgehog proteins, DHH signals through the patched (PTCH) receptors 1 and 2. Here we examine the expression and protein distribution of DHH, PTCH1 and PTCH2 in the developing testes of a marsupial mammal (the tammar wallaby) to determine whether DHH signalling is a conserved factor in gonadal development in all therian mammals.

Urinary Antimicrobial Peptides And The Urinary Microbiota In A Uti-Susceptible Population Of Female Pelvic Floor Surgery Patients, Vanessa Nienhouse

Master's Theses

Urinary tract infections (UTI)s are a national priority. Women who undergo surgery for pelvic floor disorders such as pelvic organ prolapse (POP) or urinary incontinence (UI) are at increased risk for UTI, as 10-30% will contract a post-instrumentation UTI (postI-UTI) within six weeks after surgery. Currently, the factors that contribute to the high rate of postI-UTI are unknown, and there is currently no clinical assessment to identify at-risk patients. However, antimicrobial peptides (AMPs) and characteristics of the urinary microbiota have the potential to serve as biomarkers, identifying patients at UTI risk and facilitating clinical prevention studies.

While it was previously …

Binge Ethanol Leads To Decreased Macrophage Accumulation In Infected Cutaneous Wounds, Sara Hlavin

Master's Theses

Trauma patients who consumed alcohol prior to sustaining injuries have higher rates of morbidity and mortality than those with comparable injuries who did not drink. Additionally, those who drank had impaired wound healing and increased susceptibility to infection. Despite these clinical observations, few studies have explored the effect of ethanol on the innate immune cell function in a healing wound or how this may alter resolution of cutaneous infection. A murine model of ethanol and cutaneous wound infection was used to examine bacterial growth and recruitment of innate immune cells. Mice were given either ethanol (2.2 g/kg) or saline 30 …

Characterization Of The Coca Chemokine Receptor Four Agonist Activity Of Ubiquitin, Daniel M. Staren

Master's Theses

Ubiquitin has previously been identified as another natural agonist of CXC chemokine receptor 4 (CXCR4). In addition, recent evidence suggests that ubiquitin may activate CXCR4 through a binding site on the receptor, which is distinct from the binding site for the cognate ligand stromal cell-derived factor (SDF)-1α. The cellular consequences of ubiquitin induced CXCR4 activation, however, are still poorly defined and a side-by-side comparison of CXCR4 mediated functions after activation with SDF-1α and ubiquitin is lacking. Such information will be instrumental to better understand the physiological function of CXCR4 and to further define its role as a therapeutic target in …

Temporal Dynamics Of Galapagos Marine Iguna (Amblyhynchus Cristatus) Haulout, Brianna Gale Payne

Master's Theses

Galápagos marine iguanas (Amblyrhynchus cristatus) briefly forage in marine habitats but spend their remaining time hauled out on land. A wide range of diurnal activities, from social and thermoregulatory behaviors to sleep and food processing, occurs during haulout. To understand the dynamics of haulout and foraging in relation to environmental factors, I fit compartmental models derived from ordinary differential equations to field data collected daily from 30 April to 16 May 2011 at two sites—one Sandy and one Rocky—at Cabo Douglas, Isla Fernandina. The best model for haulout at the Sandy site accounts for 77–80% of observed variability and includes …

The Effect Of Glucose On Transcription At Cpxr- And Ompr-Regulated Promoters, Andrew Charles Cosgrove

Master's Theses

While reversible acetylation of proteins has been well studied in eukaryotes and is now recognized in bacteria, global protein acetylation in bacteria is a recently appreciated phenomenon. Protein acetylation is known to affect almost every aspect of cellular physiology in eukaryotes and there is proteomic evidence that this may also hold true in bacteria. In eukaryotes, lysines are acetylated by acetyltransferases that use acetyl-CoA as the acetyl group source, and de-acetylated by deacetylases. In bacteria, this reversible process uses enzymes homologous to those used by eukaryotes.

Our lab has recently found that acetylation of RNA polymerase (RNAP) can activate transcription …

Characterization Of The Clostridium Difficile Biofilm, Michelle Laning

Master's Theses

Clostridium difficile is a Gram-positive, spore forming bacterium and an opportunistic gastrointestinal pathogen. Clostridium difficile infection (CDI) is a common nosocomial infection. Upon antibiotic treatment, patients can be colonized with C. difficile from ingestion of spores. After colonization, cells produce toxins creating symptoms from diarrhea to pseudomembranous colitis, and many patients develop recurrent infections. Interactions between host epithelium and the bacteria is a critical step in infection, yet the interaction is not well understood. It is not known how C. difficile evades host immune responses. These are important mechanisms to answer in advancing CDI treatment. A biofilm could contribute to …

Organization And Composition Of The Α21-Ii Region Of Human Chromosome 21, William Ziccardi

Master's Theses

The purpose of this project was to develop a better map of the alpha 21-II region of human chromosome 21 in regards to size and primary sequence of the five alphoid clusters that comprise the region and to explore the evolutionary relationships that exist within and between these clusters. Several HC21 BACs were identified as containing strong sequence identities to alpha 21-II clones and were mapped to various alpha 21-II clusters. It was revealed that both monomeric and HOR alphoid clusters can be found in the alpha 21-II region. Phylogenetic analysis revealed separate evolutionary histories for the monomeric and HOR …

Determination Of An Interaction Between Nipped B-Like Protein And Mll, Adam Robert Marek

Master's Theses

The Mixed Lineage Leukemia (MLL) protein serves as a positive transcriptional regulator during hematopoietic and embryonic development. The MLL gene can undergo chromosomal translocations producing leukemia-causing fusions that retain the MLL amino-terminus, including the repression domain. A recent yeast two-hybrid screening used the MLL repression domain as bait and yielded nine positive clones of Nipped B-like (NIPBL).

NIPBL is a crucial member of the cohesin complex, which functions in the segregation of sister chromatids during cell division. However, recent evidence suggests the cohesin complex can also function as a transcriptional regulator.

In this study, we wanted to confirm this interaction …

Evolution Of Interactomes, Monica Micek

Master's Theses

Protein-protein interactions are part of all biological processes and are responsible for directing the development and maintenance of all systems in a species. Identifying such interactions provides insight into molecular processes in addition to their importance in understanding disease. Identifying protein-protein interactions experimentally is expensive, both in terms of cost and effort, and can generate erroneous results. Thus computational methods are key in reducing the scope of experimental assays, providing predictions for subsequent verification. Herein I present a new computational tool for the prediction of protein-protein interactions which, looking at sequence data alone, can identify putative interacting proteins as a …

Organization Of The Centromeric Satellite I Cluster And D21z1 Short Arm Junction Region Of Human Chromosome 21, Riddhi V. Patel

Master's Theses

To study chromosomal segregation errors causing Down syndrome one needs a chromosome 21 (HC21) specific centromeric marker, which presently does not exist. Alphoid DNA is the only repetitive sequence at all human centromeres. The current map of HC21 has a gap in the p-arm alphoid (D21Z1) junction region and the centromeric satellite I (satI) sequence. This satellite I cluster was shown not to be a specific centromeric marker since it is also on HC13. There are actually multiple satI families on both HC13 and HC21. This project also filled the gap in the HC21map and characterized the D21Z1 p- arm …

Understanding The Regulation Of Metabolic Enzyme Acetylation In E. Coli, Arti Walker-Peddakotla

Master's Theses

Global protein acetylation is a newly discovered phenomenon in bacteria. Of the more than 250 acetylations reported in E. coli, many are of metabolic enzymes. Thus, acetylation could represent a novel posttranslational mechanism of metabolic control. Yet, almost nothing is known about the regulation of these acetylations or of their metabolic outcomes. Here, we report that the cAMP receptor protein (CRP) regulates protein acetylation in E. coli and provide evidence that protein acetylation modulates the flux of carbon through central metabolism. When we grew cells in mixed amino acids supplemented with glucose and cAMP, global protein acetylation increased in a …

Kv7 K+ Channels In Airway Smooth Muscle Cells As Target For Asthma Therapy, Priyanka Prakash Kakad

Master's Theses

Airway hyperresponsiveness (AHR) is an important etiological feature of asthma, the molecular mechanisms of which are poorly understood, thus preventing development of specific and effective therapies. We investigate the role played by Kv7 voltage-activated potassium channels in the pathophysiology of AHR and evaluate the significance of their regulation in treatment of asthma. Our studies provide the first evidence for expression of multiple Kv7 channels in guinea pig and human airways and demonstrate that the expression of Kv7 channels is reduced in allergen-sensitized guinea pig airways. Our ex vivo functional studies reveal that clinically available Kv7 channel activators attenuate the bronchoconstrictor …

Design Of A Tetracycline Operon Inducible System For The Control Of Vaccinia Virus Replication: Implications For Vaccine Development, Caitlin J. Hagen

Master's Theses

The use of vaccinia virus (VACV) as a vaccine resulted in the eradication of smallpox in 1979. Characteristics that contribute to the effectiveness of VACV as a vaccine and viral vector include its ability to elicit strong, long-lived humoral and cell-mediated immune responses as a live-replicating virus and to accept large inserts of DNA into its genome. However, adverse events associated with its use as the smallpox vaccine have constrained it from being more widely utilized in vaccines and therapies. We propose to improve the safety of VACV as a live-replicating vector by using elements of the tet operon to …

Psychometric Evaluation Of The Timeline Followback For Exercise Among Young Adults, Gregory A. Panza

Master's Theses

Objectives: Two separate studies assessed psychometric properties of a retrospective behavioral measure adapted for exercise called the Timeline Followback for Exercise (TLFB-E). Study one examined criterion, convergent, and predictive validity. Study two examined test-retest reliability. Methods: Study one participants (N = 66) were college students 20.0 ± 1.4yr. Validity of frequency, intensity, time, and type of exercise as assessed on the TLFB-E was examined using Pearson r correlations with accelerometers, weekly exercise contracts between participants and researchers, College Alumni Questionnaire, and a health-related physical fitness battery. Study two participants were a separate sample (N = 40) of college …

An Assessment Of Moose (Alces Alces Americana) And Moose Management In Connecticut, Andrew M. Labonte

Master's Theses

Eastern moose (Alces alces americana) populations have been increasing in New England over the past decade. Moose populations have the potential to generate human conflict due to their size, speed, nocturnal behavior, and seasonal mobility. As problems associated with increasing moose populations become more common, the need to develop management strategies that are both effective and acceptable to stakeholders becomes increasingly important. The potential for moose to continue to expand in southern New England and the long-term impacts they may have on Connecticut residents, is unclear. The overall purpose of this study was to assess how suitable Connecticut …

Effects Of 4-Hydroxy-2-Nonenal On Mutant Sperm Whale Myoglobins, Nantawat Tatiyaborworntham

Master's Theses

No abstract provided.

Septotemporal Variation In Theta Rhythm Dynamics: Effects Of Speed And Habituation, James Hinman

Master's Theses

Theta (6-12 Hz) field potentials and the synchronization (coherence) of these potentials present neural network indices of hippocampal physiology. Theta signals within the hippocampal formation may reflect alterations in sensorimotor integration, the flow of sensory input and/or distinct cognitive operations. While the power and coherence of theta signals vary across lamina within the septal hippocampus, limited information is available about variation in these indices across the septotemporal (long) or areal axis. The present study examined the relationship of locomotor speed to theta indices at CA1 and DG sites across the septotemporal axis as well as in the entorhinal cortex. Our …

Fine-Scale Genetic Structure And Parentage In Urocitellus Beldingi, Marissa R. Lafler

Master's Theses

Urocitellus beldingi (Belding's ground squirrel), previously known as Spermophilus beldingi, is a social, montane rodent that occupies alpine and subalpine meadows in the Sierra Nevadas (Helgen et al. 2009). The Tioga Pass meadow (Mono Co. CA) population has been studied behaviorally and demographically for several decades. Microsatellites were developed for this species and conditions for polymerase chain reaction (PCR) were defined. Nine microsatellite loci amplified adequately and were in Hardy-Weinberg equilibrium, displaying an average heterozygosity of 0.67±0.19. These nine microsatellite loci were analyzed via PCR to elucidate the fine scale genetic structure, offering insight into population health, stochastic events, and …

Living With Emerging Contaminants: Proteomics Of 4-Nonylphenol Exposed Arrow Goby (Clevelandia Ios), Sarah Emily Johnson

Master's Theses

Alkylphenol ethoxylates (APEs) are widely used in industrial and household products as surfactants. APEs degrade into more toxic ethoxylates, such as 4-nonylphenol (NP), which has been shown to be an endocrine disruptor and enhance the growth of tumor cells. Nonylphenol is wider spread in Pacific estuaries than originally thought. Organisms in Morro Bay, California contain some of the highest concentrations of NP reported, while containing few other contaminants. As a benthic mud-dwelling fish, the arrow goby (Clevelandia ios) may be exposed to high levels of NP due to high contaminant sequestration rates in anaerobic mud. While ecotoxicology suggests …

Factors That Relate To Overweight And Obesity In Preschool Children: An Investigation Of Preschool Children In San Luis Obispo County, Kyla Tom

Master's Theses

In the United States the trend towards overweight and obesity has been a major health concern as it has been linked to a variety of health problems. A nation-wide initiative, “Let’s Move” created by Michelle Obama was launched in February 2010 with the goal that, in one generation; every child born will be at a healthy weight at the start of adulthood. Healthy People 2020 are national health objectives for the United States to obtain by 2020. In 2009, San Luis Obispo (SLO) County preschool children overweight and obesity rates mirrored national rates of 1 in 5 four-year-old children were …

Simulated Effects Of Varied Landscape-Scale Fuel Treatments On Carbon Dynamics And Fire Behavior In The Klamath Mountains Of California, Kevin J. Osborne

Master's Theses

I utilized forest growth model (FVS-FFE) and fire simulation software (FlamMap, Randig), integrated through GIS software (ArcMap9.3), to quantify the impacts varied landscape-scale fuel treatments have on short-term onsite carbon loss, long-term onsite carbon storage, burn probability, conditional flame length, and mean fire size. Thirteen fuel treatment scenarios were simulated on a 42,000 hectare landscape in northern California: one untreated, three proposed by the US Forest Service, and nine that were spatially-optimized and developed with the Treatment Optimization Model in FlamMap. The nine scenarios developed in FlamMap varied by treatment intensity (10%, 20%, and 30% of the landscape treated) and …

Impact Of Collateral Enlargement On Smooth Muscle Phenotype, Alexander Jerome Bynum

Master's Theses

Peripheral Artery Disease is a very serious disease characterized by an arterial occlusion due to atherosclerotic plaques. In response to an arterial occlusion, arteriogenesis occurs, causing smooth muscle cells to transition from a contractile to synthetic state. Also following an arterial occlusion, functional impairment was seen in the collateral circuit. An immunofluorescence protocol was developed in order to assess the impact of collateral enlargement (arteriogenesis) on smooth muscle phenotype at various time points. Smooth muscle α-actin was used to mark all smooth muscle cells, Ki-67 was used to label proliferating smooth muscle cells, and a fluorescent nuclear stain was used …

Influence Of Detritus Levels And Organic Pollution On Interspecific Resource Competition, Oviposition Behavior, And Larval Survival Of Two Tire-Inhabiting Mosquito Species (Diptera: Culicidae), David Wayne Allgood

Master's Theses

Mosquitoes (Diptera: Culicidae) are vectors of disease in the adult stage, but understanding the factors affecting distributions of the immature stages is important to the understanding and control of adult populations. Discarded automobile tires comprise important larval mosquito habitats. The Asian tiger mosquito (Aedes albopictus) and the southern house mosquito (Culex quinquefasciatus) are two medically important species commonly found in tires, but factors affecting their larval distributions in tires have not been studied, nor have their interspecific interactions. I investigated the effects of chemicals associated with organic pollution on oviposition preferences and larval survival of both …

Tick Infestations And Their Consequences For Migratory Songbirds During Spring Stopover, Johnny Michael Sellers Jr.

Master's Theses

Migratory birds face a number of challenges during their seasonal movement from tropical/sub-tropical Central and South America to more temperate North America. Maintaining health during migration is of particular concern. This study seeks to understand how haematophageous ectoparasites, such as ticks (Ixodida), impact host body condition as they feed on passerines during migration. We hypothesized that foraging location would impact tick acquisition by migrants and that tick burdens during migration would negatively impact body condition. We surveyed 2,064 birds during spring 2009 and 2010 and found that 2.4% of the surveyed birds were infested with one or more …

Thermal Tolerance Of Age-0 Gulf Of Mexico Striped Bass (Morone Saxatilis): Ontogenetic And Genetic Effects, Corey Robert Anderson

Master's Theses

Striped bass, Morone saxatilis, were historically abundant in the Gulf of Mexico region but were largely extirpated from most Gulf rivers by the early 1960s. Since 1967 hatchery stocking has supported populations in Mississippi rivers and to date there is no evidence of natural reproduction. Intolerance of striped bass to high water temperature is a potential factor negatively impacting Gulf striped bass survival and reproductive fitness, and may be a limiting factor to reintroduction of the species in Mississippi. This work contributed to restoration efforts by establishing molecular tools necessary for genetic monitoring of striped bass restoration, and evaluating …

Measuring And Comparing Quantum Yield In Two Species Of Marine Diatoms Subjected To Constant And Fluctuating Light Conditions, Matthew Leon Stone

Master's Theses

A small-scale study was conducted to determine the effects of light fluctuations on the photosynthetic efficiency of marine phytoplankton. Two species, Phaeodactylum tricornutum and Chaetoceros gracile were grown in specialized photobioreactors on a 12-hour:12-hour light:dark cycle. The cultures were diluted 50% daily to attain a specific growth rate of 0.70 d-1. To simulate vertical mixing in high turbidity habitats under various wind conditions, dense cultures were subjected to fluctuating light treatments with frequencies ranging from 0.10 Hz to 2.00 Hz. Parallel experiments subjected the cultures to static light conditions with equal total daily light doses as those of the cultures …

Quantifying Rates Of Autocompaction In The Pearl River Marsh, Louisiana, Jeremiah Nicholas Prouhet

Master's Theses

Annual rates of shallow autocompaction (< 1 m) were calculated in the upper ~one meter of sediment from six cores of a transect in the Pearl River Marsh (PRM), Louisiana, in order to determine the most significant sedimentary property controlling this process. Compaction-free wedge cores were sub-sampled at one centimeter intervals to collect the following data: age control, using 137Cs and 210Pb, and sedimentary variables, specifically, particulate organic carbon, bulk density, median grain size, porosity, and water content. An upper and an underlying sedimentary unit (named the 137Cs and 210Pb units) were defined between radiometric datum levels, and their sedimentary properties were statistically tested for significant differences using the non-parametric Mann-Whitney test. Rates of autocompaction were calculated from the model of Williams (2003), and both rates of autocompaction and sedimentation were tested for significant differences between the upper and lower sedimentary units.

The upper unit in the six cores generally had lower bulk density, higher water content, higher porosity, and higher particulate organic carbon than the underlying unit, but with some interesting exceptions. Additionally, annual autocompaction and sedimentation rates were greatest in the overlying unit at stations PR02 (0.39 ± 0.05 cm/y) and PR05 (0.42 ± 0.03 cm/y) and greatest in the underlying unit at stations PR02 (0.22 ± 0.08 cm/y) and PR03 (0.18 ± 0.06 cm/y). Based on Spearman correlations, rates of autocompaction were most strongly correlated to and influenced by rates of sedimentation rather …

Phytoplankton Abundance And Species Composition In Relation To Environmental Paramenters In Coastal Mississippi Waters, Luz Karime Molina

Master's Theses

Phytoplankton pigments from Coastal Mississippi waters were measured to determine the spatial and temporal distributions and composition of phytoplankton communities. Concentration of phytoplankton pigments were analyzed using High Performance Liquid Chromatography (HPLC) and the compositional changes in phytoplankton communities were determined with CHEMTAX 1.95. Surface water was collected for two years (September 2007-November 2009) at three sampling sites on a monthly basis. The stations were located at the Bay of St. Louis (station 1), the Mississippi Sound (station 4) and the Mississippi Bight (station 8), following a salinity gradient. A time series of the observations documented the variability of different …

The Use Of Computed Tomography To Measure Biogenic Structures In Recently Hypoxic And Normoxic Sediments On The Louisiana Continental Shelf, Valerie Ann Hartman

Master's Theses

Over the past 60 years, seasonal hypoxia in the northern Gulf of Mexico has occurred with increased severity and over a greater area. To determine if biogenic structures in the northern Gulf of Mexico vary in response to hypoxic stress, the seafloor on the continental shelf of Louisiana was analyzed during the spring and fall of 2009 at four provinces of similar sediment type that differ in recent history of bottom water oxygen concentration. Subcores were analyzed by computed tomography (CT) to determine the number, diameter, length, volume, surface area, and depth of biogenic burrow structures in sediments where biogenic …