Life Sciences Commons^™

Alleviating Human-Elephant Conflict Through Deterrent Fences And Environmental Monitoring In Southern Kenya, Sophia Carmen Corde

Masters Theses & Specialist Projects

Human-wildlife conflict is present across the world. In areas where human settlements overlap with elephant habitats, human-elephant conflict can result from crop raiding events, compromising farmers’ food and economic security, and putting humans and elephants in danger through farmer retaliation. Elephants raid crops primarily at night, when detection by humans is lowest, and during the dry season, as crops are developing towards harvest and natural forage quality drops. People living in these areas facing HEC have developed mitigation strategies to lessen the impacts and move towards coexistence. As a team member on the Elephants and Sustainable Agriculture in Kenya project, …

High-Frequency Accelerometer Recording Of Key Predatory Behaviors In Vipers: Validation And Case Study With Timber Rattlesnakes (Crotalus Horridus), Morgan L. Thompson, Richard H. Adams, Anna Tipton, Dominic L. Desantis

Graduate Research Showcase

High-frequency accelerometer recording of key predatory behaviors in vipers: validation and case study with Timber Rattlesnakes (Crotalus horridus)

Morgan Thompson, Richard H. Adams, Anna F. Tipton, and Dominic L. DeSantis

Tri-axial accelerometers (ACTs) are becoming increasingly common in studies of animal behavior wherein direct observation of subjects in nature is constrained or impossible. ACTs are small (< 1 g) piezo-electric (spring-like) sensors that measure three-dimensional acceleration (upward, downward, and side-to-side) derived from subject motion. When leveraged with advanced machine learning techniques, these data can enable precise automated classification of a wide range of movement-mediated behaviors. Until recently, ACTs were largely reserved for larger-bodied organisms or those most amenable to the temporary external attachment of devices. Ongoing ACT miniaturization has now expanded the breadth of organisms amenable to these methods. This project aims to expand on a recently developed framework for ACT monitoring in wild-ranging snakes, a group that has been mostly overlooked in biologging applications. We are currently conducting extensive captive validation trials for robust model training and testing to enable classification of predatory behaviors, including striking and ingestion of prey items, in Timber Rattlesnakes (Crotalus horridus). Following captive validation, we will translate this method to the field with a population of C. horridus in the lower Piedmont of middle Georgia to evaluate the efficacy of externally attached ACTs for remote and continuous monitoring of …

2022 Gray Wolf Questions And Answers, United States Fish And Wildlife Service

United States Fish and Wildlife: Staff Publications

2022 Gray Wolf Questions and Answers

What does the February 10, 2022, ruling mean?

How does this ruling affect wolves in the Northern Rocky Mountains?

When does the court decision to vacate the delisting rule go into effect?

What is the legal status of gray wolves as of this ruling?

Is the Service continuing its status review of wolves in the western United States?

Is emergency listing an option for the Northern Rocky Mountain population?

Are wolf hunts going to stop as a result of the court decision?

How does this ruling affect wolves in Yellowstone National Park?

Where can …

Why Sequence All Eukaryotes?, Mark Blaxter, John M. Archibald, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Federica Di Palma, Richard Durbin, Scott V. Edwards, Jennifer A.M. Graves, Kevin J. Hackett, Neil Hall, Erich D. Jarvis, Rebecca N. Johnson, Elinor K. Karlsson, W. John Kress, Shigehiro Kuraku, Mara K. N. Lawniczak, Kerstin Lindblad-Toh, Jose V. Lopez, Nancy A. Moran, Gene E. Robinson, Oliver A. Ryder, Beth Shapiro, Pamela S. Soltis, Tandy Warnow, Guojie Zhang, Harris A. Lewin

Biology Faculty Articles

Life on Earth has evolved from initial simplicity to the astounding complexity we experience today. Bacteria and archaea have largely excelled in metabolic diversification, but eukaryotes additionally display abundant morphological innovation. How have these innovations come about and what constraints are there on the origins of novelty and the continuing maintenance of biodiversity on Earth? The history of life and the code for the working parts of cells and systems are written in the genome. The Earth BioGenome Project has proposed that the genomes of all extant, named eukaryotes—about 2 million species—should be sequenced to high quality to produce a …

Conservation, Restoration, And Monitoring Plan For The Lower White River, Utah, Casey A. Pennock, William W. Macfarlane, Phaedra Budy, Justin Jimenez, Jerrad Goodell

Ecology Center Publications

In this report we present a conservation, restoration and monitoring plan for the lower White River, a major tributary of the Green River. The plan is intended to help guide conservation, restoration and management of the lower White River over the next several decades and is also developed as an adaptive management plan to facilitate learning. The recommended conservation and restoration actions are intended to maintain and enhance native riparian vegetation and instream habitat for native desert fishes including federally endangered Colorado Pikeminnow (Ptychocheilus lucius), federally endangered Razorback Sucker (Xyrauchen texanus), Speckled Dace (Rhinichthys osculus …

A Systematic Review Of The Global Freshwater Mussel Restoration Toolbox, Roland E. Eveleens, Catherine Febria Dr

Great Lakes Institute for Environmental Research Publications

1. Halting the global decline of freshwater mussels requires an improved understanding of the restoration approaches currently in use and the identification of shortcomings to inform the development of new ones. This article reviews published evaluations of restoration efforts on the ground and those identified or proposed in the literature. 2. This review found few reports of the effectiveness of restoration measures, and of those reported there was strong temporal and geographical bias. Reports were mostly recent and took place within mussel-diverse regions of the Global North (i.e. North America, Europe). 3. Efforts focused on population support encompassed relocation, translocation …

Status, Change, And Futures Of Zooplankton In The Southern Ocean, Nadine M. Johnston, Eugene J. Murphy, Angus Atkinson, Andrew J. Constable, Cédric Cotté, Martin Cox, Kendra L. Daly, Ryan Driscoll, Hauke Flores, Svenja Halfter, Natasha Henschke, Simeon L. Hill, Juan Höfer, Brian P. Hunt, So Kawaguchi, Dhugal Lindsay, Cecilia Liszka, Valerie Loeb, Clara Manno, Bettina Meyer, Evgeny A. Pakhomov, Matthew H. Pinkerton, Christian S. Reiss, Kate Richerson, Walker O. Jr., Deborah K. Steinberg, Kerrie M. Swadling, Geraint A. Tarling, Sally E. Thorpe, Devi Veytia, Peter Ward, Christine K. Weldrick, Guang Yang

Marine Science Faculty Publications

In the Southern Ocean, several zooplankton taxonomic groups, euphausiids, copepods, salps and pteropods, are notable because of their biomass and abundance and their roles in maintaining food webs and ecosystem structure and function, including the provision of globally important ecosystem services. These groups are consumers of microbes, primary and secondary producers, and are prey for fishes, cephalopods, seabirds, and marine mammals. In providing the link between microbes, primary production, and higher trophic levels these taxa influence energy flows, biological production and biomass, biogeochemical cycles, carbon flux and food web interactions thereby modulating the structure and functioning of ecosystems. Additionally, Antarctic …

A Systematic Map Of Human-Carnivore Coexistence, Cassandre C. Venumière-Lefebvre, Stewart W. Breck, Kevin R. Crooks

USDA Wildlife Services: Staff Publications

Carnivore populations globally have largely declined, and coexistence, where humans and carnivores share landscapes, plays a crucial role in carnivore conservation. However, the term “coexistence” is often used in scientific and popular literature without being clearly defined. Herein, we provide a global perspective on what coexistence is and how it is studied. We conducted a systematic map of 366 articles published between 1987 and 2020 to characterize human-carnivore coexistence literature according to coexistence definitions, temporal trends, geographic and taxonomic focus, and four thematic aspects of coexistence: carnivore ecology, human endeavors, social conflict and human-carnivore conflict. We used chi-squared tests and …

Emerging Hot Spot Analysis To Indicate Forest Conservation Priorities And Efficacy On Regional To Continental Scales: A Study Of Forest Change In Selva Maya 2000-2020, Nicholas Cuba, Laura A. Sauls, Anthony J. Bebbington, Denise Humphreys Bebbington, Avecita Chicchon, Pilar Delpino Marimón, Oscar Diaz, Susanna Hecht, Susan Kandel, Tracey Osborne, Rebecca Ray, Madelyn Rivera, John Rogan, Viviana Zalles

Geography

Despite the importance of preserving contiguous tropical forest areas to maintain biodiversity and terrestrial carbon stocks, methodological challenges continue to hinder broad-scale analysis of threats to these forests. Emerging Hot Spot Analysis (EHSA) is a spatial-statistical method that conveys complex information about the temporal dynamics of deforestation across a range of moderate to coarse spatial scales. Using Global Forest Change (GFC) data as inputs, EHSA produces spatially comprehensive, gridded outputs that represent a standardized, reproduceable way to instantiate contiguous forest tracts as spatial objects. Doing so allows aggregation of other GFC-derived values and analysis of alternative geographic configurations besides sub-national …

The Impact Of Beneficial Organisms In Corn Agroecosystems, Callie Rosalind Braley

Doctor of Plant Health Program: Dissertations and Student Research

Corn is one of the world’s, and Nebraska’s, most important crops. Millions of acres are planted to corn each year in the Cornhusker State. However, each year there are a plethora of arthropod, weed, and microorganism pests that rob farmers of reaching their maximum yield potential. There are many options available to manage these pests in corn agroecosystems, but one option is often underutilized: beneficial organisms. For each pest, there are a variety of natural enemies that can assist in mitigating the damage caused by pests.

Many beneficial organisms exist, and they can be grouped by the type of pest …

Overfishing Drives Over One-Third Of All Sharks And Rays Toward A Global Extinction Crisis, Nicholas K. Dulvy, Nathan Pacoureau, Cassandra L. Rigby, Riley A. Pollom, Rima W. Jabado, David A. Ebert, Brittany Finucci, Caroline M. Pollock, Jessica Cheok, Danielle H. Derrick, Katelyn B. Herman, C. Samantha Sherman, Wade J. Vanderwright, Julia M. Lawson, Rachel H.L. Walls, John K. Carlson, Patricia Charvet, Kinattumkara K. Bineesh, Daniel Fernando, Gina M. Ralph, Jay H. Matsushiba, Craig Hilton-Taylor, Sonja V. Fordham, Colin A. Simpfendorfer

Biological Sciences Faculty Publications

The scale and drivers of marine biodiversity loss are being revealed by the International Union for Conservation of Nature (IUCN) Red List assessment process. We present the first global reassessment of 1,199 species in Class Chondrichthyes-sharks, rays, and chimeras. The first global assessment (in 2014) concluded that one-quarter (24%) of species were threatened. Now, 391 (32.6%) species are threatened with extinction. When this percentage of threat is applied to Data Deficient species, more than one-third (37.5%) of chondrichthyans are estimated to be threatened, with much of this change resulting from new information. Three species are Critically Endangered (Possibly Extinct), representing …

Spotted Salamander Egg Masses Exhibit A Unique Internal Microbiome In Relation To Their Environment, Elizabeth Leonard

Senior Honors Theses

Microbial studies have led to various ecological and medicinal discoveries. Amphibian eggs, like those of Ambystoma maculatum, exhibit natural resistance to bacterial invasion that may be microbiome related. The purpose of this research was to sequence the external and internal microbiome of A. maculatum egg masses and compare with the environmental microbiome. It was hypothesized that the external and internal microbiome would bear more similarity to each other than the water. A significant difference was observed between the microbiome of the inside surface of the egg mass and the water but not the outside surface of the egg and …

Soil Not Oil: An Assessment Of The Role Of Earth Jurisprudence In Restoring Biodiversity Conservation In The Indigenous Bagungu Community, In Uganda, Joslyn Primicias

Independent Study Project (ISP) Collection

An Earth-centered way of living is essential in Western Uganda, along with many more repressed regions affected by giant corporate evils. The purpose of this study was to assess the contribution of Earth Jurisprudence in the restoration of conservation in the Indigenous Bagungu community. More specifically, this study examines the customary laws and rituals used by the Bagungu, the strategies used to decolonize their culture, and their perspectives on foreign influence and globalization. Key-informant interviews were conducted with seven custodians and questionnaire-led interviews were administered to thirty-one clan members from the districts of Buliisa and Hoima. The study sample size …

Predictors Of Marine Genetic Structure In The Indo-Australian Archipelago, Udhi E. Hernawan, Paul S. Lavery, Gary A. Kendrick, Kor-Jent Van Dijk, Yaya I. Ulumuddin, Teddy Triandiza, Kathryn M. Mcmahon

Research outputs 2014 to 2021

The spatial genetic structure of marine organisms is related to dispersal and life-history traits, historical processes, current oceanographic connectivity and habitat features. Here, we assessed the relative importance of these factors for the genetic structure of a broad range of marine species in the Indo Australian Archipelago (IAA). We collated published data on 99 marine species from eight taxonomic groups (ascidians, fishes, molluscs, crustaceans, echinoderms, corals, reptiles, and marine plants) and used generalized linear models (GLMs) to estimate the best predictors of genetic structure. Genetic structure was characterized by FST and the number of genetic clusters over the study area. …

Effects Of Patch Size, Fragmentation, And Invasive Species On Plant And Lepidoptera Communities In Southern Texas, James A. Stilley, Christopher A. Gabler

Biology Faculty Publications and Presentations

Simple Summary

Cats And Wildlife: An Animal Welfare Perspective., John Hadidian

Management - General

While there is no question that outdoors cats have an impact on wildlife, the extent and significance of this impact is the subject of considerable debate. The controversy surrounding outdoor cats can be traced back at least a century, with contemporary claims of threats to global biodiversity bringing animal welfare and conservation interests directly into opposition, largely over the means of managing conflicts. The irony in this is that cat defenders and cat detractors generally agree that it is in the best interests of cats that they should be shielded from the vagaries of outdoor life. While there are practical …

Toxicology Of Chemical Stress To Monarch Butterflies (Danaus Plexippus L.), Annie Krueger

Department of Entomology: Dissertations, Theses, and Student Research

Monarch butterfly (Danaus plexippus L.) population declines have caught the attention of the country and prompted nationwide conservation initiatives. The United States Fish and Wildlife Service has identified insecticide exposure and loss of milkweed (Asclepias spp.) reproductive habitat as primary threats to the monarch. In the Midwestern US, milkweed largely occurs around cropland borders where there may be a spatial and temporal overlap of monarch larvae, insecticide usage, and fertilizer applications. In this study, the acute toxicity and sub-lethal effects on growth and diet consumption of two commonly used pyrethroid insecticides, bifenthrin and beta-cyfluthrin, were characterized …

Conservation Of South Florida Orchid Mycorrhizal Fungi, Ellen Garcia

FIU Electronic Theses and Dissertations

Starting in the late 1800’s orchids were heavily poached, leaving many species to reach critically low numbers. Coupled with habitat loss and urbanization many orchid populations were extirpated in southern Florida. Due to lack of endosperm, orchid seeds are reliant on specific mycorrhizal fungi to obtain nutrients to enable growth and development resulting in very low germination rates in nature. The obligate relationship on mycorrhizal fungi complicates orchid re-establishment. The research project aims are (1) to evaluate the correlation between phenotypic traits and optimal growing conditions in various micro-climate, and (2) to assess the range of mycorrhizal fungi community in …

Agricultural Conservation Practices And Aquatic Ecological Responses, Richard E. Lizotte, Peter C. Smiley, Robert B. Gillespie, Scott S. Knight

Faculty and Student Publications

Conservation agriculture practices (CAs) have been internationally promoted and used for decades to enhance soil health and mitigate soil loss. An additional benefit of CAs has been mitigation of agricultural runoff impacts on aquatic ecosystems. Countries across the globe have agricultural agencies that provide programs for farmers to implement a variety of CAs. Increasingly there is a need to demonstrate that CAs can provide ecological improvements in aquatic ecosystems. Growing global concerns of lost habitat, biodiversity, and ecosystem services, increased eutrophication and associated harmful algal blooms are expected to intensify with increasing global populations and changing climate. We conducted a …

Monarch Butterfly (Danaus Plexippus) Life-Stage Risks From Foliar And Seed-Treatment Insecticides, Niranjana Krishnan, Yang Zhang, Melanie E. Aust, Richard L. Hellmich, Joel R. Coats, Steven P. Bradbury

Biological Sciences Faculty Research & Creative Works

Conservation of North America's eastern monarch butterfly (Danaus plexippus) population would require establishment of milkweed (Asclepias spp.) and nectar plants in the agricultural landscapes of the north central United States. A variety of seed-treatment and foliar insecticides are used to manage early- and late-season pests in these landscapes. Thus, there is a need to assess risks of these insecticides to monarch butterfly life stages to inform habitat conservation practices. Chronic and acute dietary toxicity studies were undertaken with larvae and adults, and acute topical bioassays were conducted with eggs, pupae, and adults using 6 representative insecticides: beta-cyfluthrin …

Special Issue: Feature Papers 2020, Douglas D. Archbold

Horticulture Faculty Publications

No abstract provided.

A Landscape-Level Assessment Of Restoration Resource Allocation For The Eastern Monarch Butterfly, Rodrigo Solis-Sosa, Arne Mooers, Maxim Larrivée, Sean Cox, Christina A.D. Semeniuk

Great Lakes Institute for Environmental Research Publications

The Monarch butterfly eastern population (Danaus plexippus) is in decline primarily due to habitat loss. Current habitat restoration programs focus on re-establishing milkweed, the primary food resource for Monarch caterpillars, in the central United States of America. However, individual components of the Monarch life cycle function as part of an integrated whole. Here we develop the MOBU-SDyM, a migration-wide systems dynamics model of the Monarch butterfly migratory cycle to explore alternative management strategies’ impacts. Our model offers several advances over previous efforts, considering complex variables such as dynamic temperature-dependent developmental times, dynamic habitat availability, and weather-related mortality across the entire …

Vignette 04: Olympia Oysters, Jodie Toft, Betsy Peabody

Institute Publications

Olympia oysters (Ostrea lurida) are our only native oyster species here in the Salish Sea. Olympia oysters once covered an estimated 13-26% of the intertidal area in Puget Sound, mostly near the heads of inlets. A combination of overharvest, pollution, and habitat loss reduced the current population to less than 4% of historic numbers, though sparse numbers of Olympia oysters can still be found throughout most of their historic distribution. Looking to the future, as our region’s marine waters experience effects of climate change and ocean acidification (OA), native species such as the Olympia oyster may prove to …

Habitat Loss On The Breeding Grounds Is A Major Contributor To Population Declines In A Long-Distance Migratory Songbird, Michael T. Hallworth, Erin Bayne, Emily Mckinnon, Oliver Love, Junior A. Tremblay, Bruno Drolet, Jacques Ibarzabal, Steven Van Wilgenburg, Peter P. Marra

Great Lakes Institute for Environmental Research Publications

Many migratory species are declining and for most, the proximate causes of their declines remain unknown. For many long-distance Neotropical migratory songbirds, it is assumed that habitat loss on breeding or non-breeding grounds is a primary driver of population declines. We integrated data collected from tracking technology, community science and remote sensing data to quantify migratory connectivity (MC), population trends and habitat loss. We quantified the correlation between forest change throughout the annual cycle and population declines of a long-distance migratory songbird, the Connecticut warbler (Oporornis agilis, observed decline: -8.99% yr -1). MC, the geographic link between populations during two …

The Big Picture: Consolidating National Government And Cites Records Of Animal Trade In The Philippines From 1975 To 2019, Ronald Allan L. Cruz, Catherine Genevieve B. Lagunzad

Biology Faculty Publications

The Philippines has exceptionally high biodiversity but is also a hotspot. It is a recognized source; destination; and transit point for the global wildlife trade; which drives biodiversity loss. There is an abundance of data from the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) on the Philippines; but this data has not been assessed for historical trends. Confiscation data reflecting the illegal trade is scarcer; coming from recent (2008 onward) records of the Department of Environment and Natural Resources ___ Biodiversity Management Bureau (DENR-BMB) and the Palawan Council for Sustainable Development (PCSD). CITES data …

Great Expectations: Deconstructing The Process Pathways Underlying Beaver-Related Restoration, Caroline S. Nash, Gordon E. Grant, Susan Charnley, Jason B. Dunham, Hannah Gosnell, Mark B. Hausner, David S. Pilliod, Jimmy Taylor

USDA Wildlife Services: Staff Publications

Beaver-related restoration is a process-based strategy that seeks to address wide-ranging ecological objectives by reestablishing dam building in degraded stream systems. Although the beaver-related restoration has broad appeal, especially in water-limited systems, its effectiveness is not yet well documented. In this article, we present a process-expectation framework that links beaver-related restoration tactics to commonly expected outcomes by identifying the set of process pathways that must occur to achieve those expected outcomes. We explore the contingency implicit within this framework using social and biophysical data from project and research sites. This analysis reveals that outcomes are often predicated on complex process …

Environmental Drivers Of Mesophotic Echinoderm Assemblages Of The Southeastern Pacific Ocean, Ariadna Mecho, Boris Dewitte, Javier Sellanes, Simon Van Gennip, Erin E. Easton, Joao B. Gusmao

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Mesophotic ecosystems (50–400 m depth) of the southeastern Pacific have rarely been studied because of the logistical challenges in sampling across this remote zone. This study assessed how oxygen concentrations and other environmental predictors explain variation in echinoderm assemblages at these mesophotic systems, where this group is among the predominant fauna. We compiled data on echinoderm taxa at 91 sampling stations, from historical and recent surveys (between 1950 and 2019), covering a longitudinal gradient of approximately 3,700 km along with the Nazca, Salas y Gómez, and Juan Fernández ridges. Uni- and multivariate model-based tools were applied to analyze the patterns …

From Coast To Coast To Coast: Ecology And Management Of Eelgrass Systems Across Canada, Sarah Joy Bittick

Biology Faculty Works

Seagrass meadows are among the most productive and diverse marine ecosystems, providing essential structure, functions, and services. They are also among the most impacted by human activities and in urgent need of better management and protection. In Canada, eelgrass (Zostera marina) meadows are found along the Atlantic, Pacific, and Arctic coasts, and thus occur across a wide range of biogeographic conditions. Here, we synthesize knowledge of eelgrass ecosystems across Canada’s coasts, highlighting commonalities and differences in environmental conditions, plant, habitat, and community structure, as well as current trends and human impacts. Across regions, eelgrass life history, phenology, and general species …

Covid-19_School Of Economics_Malacarne And Colleagues Address The Impacts Of Covid- 19 On Maine's Food System, University Of Maine School Of Economics

Teaching, Learning & Research Documents

Screenshot of a University of Maine School of Economics news release webpage regarding Jonathan Malacarne (SOE Assistant Professor), Jason Lilley (University of Maine Cooperative Extension Professional), and Tora Jackson (Maine Farmer Resource Network) presenting a summary of the impacts of COVID-19 on Maine's food system at the Department of Agriculture, Conservation and Forestry's (DACF) 2021 virtual Maine Ag Trades Show.

A New Vine Snake (Reptilia, Colubridae, Oxybelis) From Peru And Redescription Of O. Acuminatus, Robert C. Jadin, Michael J. Jowers, Sarah A. Orlofske, William E. Duellman, Christopher Blair, John C. Murphy

Publications and Research

The Brown Vine Snake, Oxybelis aeneus, was until recently considered a single species, distributed from southern Arizona through the Neotropics into southeastern Brazil. However, newly conducted research restructured the species with a substantial taxonomic revision, recognizing five additional taxa (i.e. O. koehleri, O. microphthalmus, O. potosiensis, O. rutherfordi, O. vittatus) in this species complex. This revision focused on populations in North America, Central America, and northern South America while neglecting the southern portion of its distribution. Here, we examine the taxonomic history of the complex and use it along with specimen data to resurrect O. acuminatus from southeastern Brazil. Finally, …