Life Sciences Commons^™

Rivfishtime: A Global Database Of Fish Time-Series As A Currency For Global Change Ecology Research In Riverine Systems, Lise Comte, Juan Carvajal-Quintero, Pablo A. Tedesco, Ulrich Brose, Tibor Erős, Ana F. Filipe, Marie-Josée Fortin, Katie Irving, Claire Jacquet, Christopher M. Taylor

Biology Faculty Publications and Presentations

Motivation

We compiled a global database of long-term riverine fish surveys from 46 regional and national monitoring programmes and from individual academic research efforts, with which numerous basic and applied questions in ecology and global change research can be explored. Such spatially and temporally extensive datasets have been lacking for freshwater systems in comparison to terrestrial ones.

Main types of variables contained

The database includes 11,386 time-series of riverine fish community catch data, including 646,270 species-specific abundance records, together with metadata related to the geographical location and sampling methodology of each time-series.

Spatial location and grain

The database contains 11,072 …

Connections In The Underworld: A Morphological And Molecular Study Of Diversity And Connectivity Among Anchialine Shrimp., Robert Eugene Ditter

FIU Electronic Theses and Dissertations

This research investigates the distribution and population structure of crustaceans, endemic to anchialine systems in the tropical western Atlantic focusing on cave-dwelling shrimp from the family Barbouriidae. Taxonomic and molecular tools (genetic and genomic) are utilized to examine population dynamics and the presence of phenotypic hypervariation (PhyV) of the critically endangered species Barbouria cubensis (von Martens, 1872). The presence of PhyV and its geographic distribution is investigated among anchialine populations of B. cubensis from 34 sites on Abaco, Eleuthera, and San Salvador, Bahamas. Examination of 54 informative morphological characters revealed PhyV present in nearly 90% (n=463) of specimens with no …

Suitability Of Native Milkweed (Asclepias) Species Versus Cultivars For Supporting Monarch Butterflies And Bees In Urban Gardens [Research Data], Daniel A. Potter

Entomology Research Data

Public interest in ecological landscaping and gardening is fueling a robust market for native plants. Most plants available to consumers through the horticulture trade are cultivated forms that have been selected for modified flowers or foliage, compactness, or other ornamental characteristics. Depending on their traits, some native plant cultivars seem to support pollinators, specialist insect folivores, and insect-based vertebrate food webs as effectively as native plant species, whereas others do not. There is particular need for information on whether native cultivars can be as effective as true or “wild-type” native species for supporting specialist native insects of conservation concern. Herein …

Suitability Of Native Milkweed (Asclepias) Species Versus Cultivars For Supporting Monarch Butterflies And Bees In Urban Gardens, Adam M. Baker, Carl T. Redmond, Stephen B. Malcolm, Daniel A. Potter

Entomology Faculty Publications

Public interest in ecological landscaping and gardening is fueling a robust market for native plants. Most plants available to consumers through the horticulture trade are cultivated forms that have been selected for modified flowers or foliage, compactness, or other ornamental characteristics. Depending on their traits, some native plant cultivars seem to support pollinators, specialist insect folivores, and insect-based vertebrate food webs as effectively as native plant species, whereas others do not. There is particular need for information on whether native cultivars can be as effective as true or “wild-type” native species for supporting specialist native insects of conservation concern. Herein …

Seasonal Movements And Habitat Use Of Juvenile Smooth Hammerhead Sharks In The Western North Atlantic Ocean And Significance For Management, Ryan K. Logan, Jeremy Vaudo, Lara L. Sousa, Mark Sampson, Bradley M. Wetherbee, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Articles

Upper trophic level predators dramatically impacted by fisheries include the large-bodied hammerhead sharks, which have become species of conservation concern worldwide. Implementing spatial management for conservation of hammerhead populations requires knowledge of temporal distribution patterns and habitat use, identification of essential habitat for protection, and quantification of interactions with human activities. There is little such information for the smooth hammerhead shark, Sphyrna zygaena. We used fin-mounted satellite tags to examine the movements and habitat use of juvenile smooth hammerheads, a demographic segment particularly threatened by exploitation. Six sharks were tagged off the US mid-Atlantic and tracked for 49–441 days …

Ecology And Evolution, David J. Lohman

Open Educational Resources

Introduction to the basic principles of ecology and evolutionary biology emphasizing quantitative approaches and hypothesis testing. Scientific reasoning, computer literacy, and writing skills are developed in the laboratory.

Mammals Of Cedar Breaks National Monument, S. Nicole Frey, Natalie D'Souza, Ethan Hammer, Bryan Larsen, Jake Nielson

All Current Publications

This document is the result of a study of the terrestrial mammals found at Cedar Breaks National Monument from 2017-2019. During this time, we conducted a survey of mammals using a series of trail cameras. We used survey results to provide an index of terrestrial mammals (excluding bats) within the park. Our goal is to provide a beginner’s guide to the mammals at Cedar Breaks National Monument. We include information regarding appearance, diet, habitat, and population status according to the International Union for the Conservation of Nature (IUCN). The guide represents the species a visitor to Cedar Breaks National Monument …

Western Bumble Bee: Declines In The Continental United States And Range-Wide Information Gaps, Tabitha A. Graves, William M. Janousek, Sarah M. Gaulke, Amy C. Nicholas, Douglas A. Keinath, Christine M. Bell, Syd Cannings, Richard G. Hatfield, Jennifer M. Heron, Jonathan B. Koch, Helen L. Loffland, Leif L. Richardson, Ashley T. Rohde, Jessica Rykken, James P. Strange, Et Al.

Wildland Resources Student Research

In recent decades, many bumble bee species have declined due to changes in habitat, climate, and pressures from pathogens, pesticides, and introduced species. The western bumble bee (Bombus occidentalis), once common throughout western North America, is a species of concern and will be considered for listing by the U.S. Fish and Wildlife Service (USFWS) under the Endangered Species Act (ESA). We attempt to improve alignment of data collection and research with USFWS needs to consider redundancy, resiliency, and representation in the upcoming species status assessment. We reviewed existing data and literature on B. occidentalis, highlighting information gaps …

Potential Effects Of Climate Change On The Geographic Distribution Of The Endangered Plant Species Manihot Walkerae, Gisel Garza, Armida Rivera, Crystian Sadel Venegas Barrera, Jose Guadalupe Martinez-Avalos, Jon Dale, Teresa Patricia Feria-Arroyo

Biology Faculty Publications and Presentations

Walker’s Manihot, Manihot walkerae, is an endangered plant that is endemic to the Tamaulipan thornscrub ecoregion of extreme southern Texas and northeastern Mexico. M. walkerae populations are highly fragmented and are found on both protected public lands and private property. Habitat loss and competition by invasive species are the most detrimental threats for M. walkerae; however, the effect of climate change on M. walkerae’s geographic distribution remains unexplored and could result in further range restrictions. Our objectives are to evaluate the potential effects of climate change on the distribution of M. walkerae and assess the usefulness of natural protected areas …

Vertebrates On The Brink As Indicators Of Biological Annihilation And The Sixth Mass Extinction, Gerardo Ceballos, Paul R. Ehrlich, Peter H. Raven

Harold W. Manter Laboratory: Library Materials

The ongoing sixth mass species extinction is the result of the destruction of component populations leading to eventual extirpation of entire species. Populations and species extinctions have severe implications for society through the degradation of ecosystem services. Here we assess the extinction crisis from a different perspective. We examine 29,400 species of terrestrial vertebrates, and determine which are on the brink of extinction because they have fewer than 1,000 individuals. There are 515 species on the brink (1.7% of the evaluated vertebrates). Around 94% of the populations of 77 mammal and bird species on the brink have been lost in …

The Effects Of Phosphate On Larval Western Barred Tiger Salamanders (Ambystoma Mavortium), Lexy Polivanov, Dennis Ferraro

UCARE Research Products

This study seeks examine the effects of elevated phosphate levels on the larval stage of the Western Barred Tiger Salamander (Ambystoma mavortium). Hypothesis: Additional phosphate in the water will cause the larval salamanders to have a slower metamorphosis rate than the control group with no additional phosphates. This hypothesis is based off of research that showed that additional nitrogen in the water caused a slower growth rate in the Western Barred Tiger Salamander (Ambystoma mavortium) (Griffis-Kyle, 2007).

The hypothesis was rejected. The dates the larvae morphed alternated between treatment and control. The treatment metamorphosis was not …

The Trichoptera Of Panama Xiv. New Species Of Microcaddisflies (Trichoptera: Hydroptilidae) From Omar Torrijos Herrera National Park, Brian J. Armitage, Steven C. Harris

Insecta Mundi

Abstract. In 2017, a new project was begun to assess the biodiversity of national parks and forest reserves in the Republic of Panama. Designated “Proyecto Sistema de Producción Sostenible Conservación de la Biodiversidad (PSPSCB)”, this project is managed by Panama’s Ministerio de Ambiente. The first park sampled in 2017 was Omar Torrijos Herrera National Park (OTHNP). Trichoptera (Insecta) were collected at four locations using both Malaise traps and UV light traps. The rugged terrain and lack of access in this remote park limited the sampled area. Sampling included streams in both the Caribbean and Pacific drainages. Seven new species of …

Utah's Own Habitat Guidelines For Sage-Grouse, David K. Dahlgren, Michel Kohl, Eric Thacker, S. Nicole Frey, Terry Messmer

All Current Publications

Those living and working within western North America’s sagebrush landscapes have most likely been exposed to sage-grouse issues for many years now and may have felt anxiety concerning the potential impacts that could result from implementing conservation measures designed to help this iconic species persist. Society’s challenge to seek the delicate balance between the conservation of nature and the growth related to human endeavors exemplifies the need to use the best available science as we move forward. Representative information, especially at the landscape level related to sage-grouse, has been hard to come by. However, due to the vast amount of …

Expanding The Known Ranges Of The Phreatic Snails (Mollusca, Gastropoda, Cochliopidae) Of Texas, Usa, Dominique Alvear, Peter H. Diaz, J. Randy Gibson, Benjamin T. Hutchins, Benjamin Schwartz, Kathryn E. Perez

Biology Faculty Publications and Presentations

The Edwards-Trinity Aquifer System of Texas, USA, one of the world’s most ecologically diverse groundwater systems, contains 14 species (across seven genera) of small, poorly studied freshwater snails. Their underground habitat and microscopic size make them difficult to study and identify. Most published records are from original species descriptions, and some have not been seen since they were described more than 100 years ago. Here we use ~150 new collections, including spring and hyporheic zone sampling from across the Texas portions of the Edwards-Trinity Aquifer System, to update the ranges of these species. Two species were very uncommon, if encountered …

Assessing Field-Scale Risks Of Foliar Insecticide Applications To Monarch Butterfly (Danaus Plexippus) Larvae, Niranjana Krishnan, Yang Zhang, Keith G. Bidne, Richard L. Hellmich, Joel R. Coats, Steven P. Bradbury

Biological Sciences Faculty Research & Creative Works

Establishment and maintenance of milkweed plants (Asclepias spp.) in agricultural landscapes of the north central United States are needed to reverse the decline of North America's eastern monarch butterfly (Danaus plexippus) population. Because of a lack of toxicity data, it is unclear how insecticide use may reduce monarch productivity when milkweed habitat is placed near maize and soybean fields. To assess the potential effects of foliar insecticides, acute cuticular and dietary toxicity of 5 representative active ingredients were determined: beta-cyfluthrin (pyrethroid), chlorantraniliprole (anthranilic diamide), chlorpyrifos (organophosphate), and imidacloprid and thiamethoxam (neonicotinoids). Cuticular median lethal dose values for …

Mesohabitat Associations Of The Devil Tryonia, Tryonia Diaboli (Gastropoda: Truncatelloidea: Cochliopidae), Peter H. Diaz, Dominique Alvear, Kathryn E. Perez

Biology Faculty Publications and Presentations

The Cochliopidae of Texas include both stygobitic species, those that occupy only underground habitats, and epigean species, those living only in aboveground habitats. The devil tryonia, Tryonia diaboli, was described from the Devils River of Texas from river wrack, without additional habitat information. This species has been largely ignored since its description, so details of its habitat and ecology are obscure. In Dolan Springs and Finegan Springs, flowing into the Devils River, we sampled macroinvertebrates at five sites that form a gradient from the aquifer to the mainstem Devils River. We found the highest abundances of T. diaboli in aquifer …

Conservation Efforts Concerning Native Bee Species Of Michigan, Thomas Hellman

Independent Study Project (ISP) Collection

Bee species all over the world are declining at concerning rates. However, it is good to see the public rallying behind the “save the bees!” movement even though most efforts from this movement have been on the conservation of the European honeybees. This is because most people often associate the honeybee, which is only one of 20,000 known bee species in the world, to all other bees. Therefore, conservation efforts should be broadened and aimed towards the many native bee species that can be found locally in North America. In the state of Michigan, there are over 450 species, and …

Conservation Of Bta-Mir-29b And Its Effect On Human Gene Expression, Anna Barent, Katie Meinders, Daniel Gutzmann, Audrey L. Atkin

UCARE Research Products

The purposeof this work was to examine conservation of miR-29b and its binding sites in target mRNAs as well as co-expression of bta-miR-29b in bovine milk exosomes and its target mRNAs in HEK293 cells

•miRNAs are often highly conserved across species and bind to target mRNAs resulting in decreased gene expression. •Bovine milk exosomes contain miRNAs and most of these miRNAs are identical to human miRNAs. •Because these miRNAs are so conserved, it is hypothesized that bovine miRNAs can regulate gene expression and be linked to disease risk.

•miR-29b is highly conserved. •Identified 17 experimentally validated miR-29b target mRNAs. •The …

The Effects Of Phosphate On The Metamorphosis Of Larval Western Barred Tiger Salamanders (Ambystoma Mavortium), Lexy Polivanov

Honors Theses

This investigation will collect data to assist in determining if elevated aquatic phosphate levels affects the metamorphosis rate of larval western barred tiger salamanders (Ambystoma mavortium). Monoammonium phosphate fertilizers are being used on crops in Nebraska (NDA, 2017). This area lines up with the area the western barred tiger salamanders are disappearing from (Damme, 2018). Monoammonium phosphate is made up of nitrogen and phosphate. There have been several studies showing how nitrogen is harmful to amphibians such as this salamander (Griffis-Kyle, 2007) (Griffis-Kyle & Richtie, 2007), but there have not been many showing how phosphate affects amphibian’s metamorphosis …

Using Genetics To Inform Restoration And Predict Resilience In Declining Populations Of A Keystone Marine Sponge, Sarah M. Griffiths, Evelyn D. Taylor-Cox, Donald C. Behringer, Mark J. Butler Iv, Richard F. Preziosi

Biological Sciences Faculty Publications

Genetic tools can have a key role in informing conservation management of declining populations. Genetic diversity is an important determinant of population fitness and resilience, and can require careful management to ensure sufficient variation is present. In addition, population genetics data reveal patterns of connectivity and gene flow between locations, enabling mangers to predict recovery and resilience, identify areas of local adaptation, and generate restoration plans. Here, we demonstrate a conservation genetics approach to inform restoration and management of the loggerhead sponge (Spheciospongia vesparium) in the Florida Keys, USA. This species is a dominant, habitat-forming component of marine ecosystems in …

Sex Ratio Is Variable And Increasingly Male Biased At Two Colonies Of Magellanic Penguins, Natasha J. Gownaris, Pablo García Borboroglu, P. Dee Boersma

Environmental Studies Faculty Publications

Sex ratios are commonly skewed and variable in wild populations, but few studies track temporal trends in this demographic parameter. We examined variation in the operational sex ratio at two protected and declining breeding colonies of Magellanic Penguins (Spheniscus magellanicus) in Chubut, Argentina. Penguins from the two colonies, separated by 105 km, migrate north in the non‐breeding season and have overlapping distributions at sea. Conditions during the non‐breeding season can impact long‐term trends in operational sex ratio (i.e., through sex‐specific survival) and interannual variation in operational sex ratio (i.e., through sex‐specific breeding decisions). We found an increasingly male‐biased …

Integration Of Citygreen Landscape Ecological Analysis Into A Capstone Environmental Science Course, David L. Kulhavy, Daniel R. Unger, Reid Viegut, I-Kuai Hung, Yanli Zhang

Faculty Publications

CITYgreen Geographic Information Systems software was used to develop a campus wide cover type map for Stephen F. Austin State University in an environmental science landscape ecology course. The finding indicated an equal division of forest cover type compared to impervious surface of buildings and paved surface. Once the classification was completed, students chose an area for reforestation identified in CITYgreen, while raising funds for the purchase of trees for the project. Before completing the project, students reviewed tenets of landscape ecology, civic ecology education, and benefits of urban forestry. At the completion of the project, students reviewed service-learning aspects …

Placebo Bait Uptake Trial To Test Feasibility Of Polynesian Rat (Rattus Exulans) Eradication On Wake Atoll, Chris N. Niebuhr, Israel Leinbach, Thomas W. Mcauliffe, Dean K. Foster, Shane R. Siers

Proceedings of the Twenty-Ninth Vertebrate Pest Conference (2020)

Rodent eradications have contributed to the recovery of many threatened species, but challenges often exist for campaigns that occur on tropical islands when compared to more temperate regions. A post-operational review of a rat eradication operation on Wake Atoll indicated that certain areas, such as those with high alternative food abundance, may have contributed to the failure to remove all Polynesian rats. We conducted a nontoxic bait uptake trial to evaluate whether the maximum prescribed bait application rate for Brodifacoum-25W rodenticide pellets was sufficient to expose all rats to a lethal dose at three sites on Wake Atoll, including around …

Conserving Spawning Stocks Through Harvest Slot Limits And No-Take Protected Areas, Gaya Gnanalingam, Holly Gaff, Mark J. Butler Iv

Biological Sciences Faculty Publications

The key to the conservation of harvested species is the maintenance of reproductive success. Yet for many marine species large, old individuals are targeted despite their disproportionate contribution to reproduction. We hypothesized that a combination of no-take marine protected areas (MPAs) and harvest slot limits (maximum and minimum size limits) would result in the conservation of large spawning individuals under heavy harvest. We tested this approach under different harvest intensities with a 2-sex, stage-structured metapopulation model for the Caribbean spiny lobster (Panulirus argus). P. argus is intensively harvested in the Caribbean, and in many localities large, mature individuals no longer …

Importance Of Taxonomic Group, Life Stage And Circumstance Of Rescue Upon Wildlife Rehabilitation In Ontario, Canada, Gillian Kelly, Javier Delbarco-Trillo

Faculty Publications – Biological Sciences

Wildlife rehabilitation is an increasingly important and global practice, aiming towards advancements in animal welfare and species conservation. Although there are ongoing discussions on the benefits and limitations of wildlife rehabilitation, there is a general agreement on the importance of wildlife rehabilitation on improving the welfare of wild animals and identifying threats to wildlife. Determining which factors lead to a successful outcome of rehabilitation can allow wildlife rehabilitation centres to best focus their resources to benefit animals with the greatest chance of a successful release. In this study, three factors affecting the success of rehabilitation were evaluated: taxonomic group, life …

Translating Globally Threatened Marine Species Information Into Regional Guidance For The Gulf Of Mexico, Kyle Strongin, Beth Polidoro, Christi Linardich, Gina Ralph, Kent Carpenter

Biological Sciences Faculty Publications

A comprehensive understanding of the status of marine organisms in the Gulf of Mexico is critical to the conservation and improved management of marine biodiversity in the region. Threats and extinction risk, based on application of the IUCN Red List Categories and Criteria at the global level, were analyzed for 1,300 Gulf of Mexico marine species. These species include all known marine mammals, sea birds, marine reptiles, cartilaginous fishes, bony shorefishes, corals, mangroves, seagrasses and complete clades of select invertebrates. Analyses showed that 6% of these species are threatened, 2% Near Threatened, 9% Data Deficient, and 83% Least Concern. However, …

Mitochondrial Genomes And Genetic Structure Of The Kemp's Ridley Sea Turtle (Lepidochelys Kempii), Hilary R. Frandsen, Diego F. Figueroa, Jeff A. George

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

The Kemp's ridley (Lepidochelys kempii) is the world's most endangered sea turtle species and is primarily distributed in the Gulf of Mexico. In the United States, South Padre Island, Texas serves as a key nesting ground for the species. Genetic studies of the Kemp's ridley have been used to aid in conservation and management practices, with the mitochondrial control region as the most commonly used marker due to its perceived hypervariability and ease of sequencing. However, with the advent of next generation sequencing technology, targeting complete mitochondrial genomes is now feasible. Here, we describe a more complete mitochondrial genome for …

Species Distribution Models To Inform At-Risk Species Status Assessments In The Southeastern Us, Carlos Ramirez-Reyes, Mona Nazeri, Garrett Street, Francisco Vilella, D. Todd Jones-Farrand, Kristine O. Evans

College of Forest Resources Publications and Scholarship

The USFWS is working collaboratively with State Wildlife Agencies, Universities, Non-profits and others in the southeast to address the National Listing Workplan. The USFWS needs up-to-date information on current status and the likely impact of future changes to develop Species Status Assessments (SSAs), which help inform listing decisions. States, Universities and other partners are providing species expertise, location data, analytical support and logistical support (e.g. surveys). However, a significant knowledge gap remains in understanding potential species distributions, from which status surveys can be more strategically implemented. This project provides a bridge between species location information and the SSAs by developing …