Life Sciences Commons^™

Genetic Population Dynamics Of The Critically Endangered Scalloped Hammerhead Shark (Sphyrna Lewini) In The Eastern Tropical Pacific, Sydney P. Harned, Andrea Bernard, Pelayo Salinas-De-Leon, Marissa Mehlrose, Jenifer Suarez, Yolani Robles, Sandra Bessudo Lion, Felipe Ladino, Andrés López Garo, Ilena Zanella, Kevin A. Feldheim, Mahmood Shivji

Biology Faculty Articles

The scalloped hammerhead shark, Sphyrna lewini, is a Critically Endangered, migratory species known for its tendency to form iconic and visually spectacular large aggregations. Herein, we investigated the population genetic dynamics of the scalloped hammerhead across much of its distribution in the Eastern Tropical Pacific (ETP), ranging from Costa Rica to Ecuador, focusing on young-of-year animals from putative coastal nursery areas and adult females from seasonal aggregations that form in the northern Galápagos Islands. Nuclear microsatellites and partial mitochondrial control region sequences showed little evidence of population structure suggesting that scalloped hammerheads in this ETP region comprise a single …

Bison Movements Change With Weather: Implications For Their Continued Conservation In The Anthropocene, Nicholas A. Mcmillan, Samuel D. Fuhlendorf, Barney Luttbeg, Laura E. Goodman, Craig A. Davis, Brady W. Allred, Robert G. Hamilton

Department of Agronomy and Horticulture: Faculty Publications

Animal movement patterns are affected by complex interactions between biotic and abiotic landscape conditions, and these patterns are being altered by weather variability associated with a changing climate. Some animals, like the American plains bison (Bison bison L.; hereafter, plains bison), are considered keystone species, thus their response to weather variability may alter ecosystem structure and biodiversity patterns. Many movement studies of plains bison and other ungulates have focused on point-pattern analyses (e.g., resource-selection) that have provided information about where these animals move, but information about when or why these animals move is limited. For example, information surrounding the …

Population Density And Reproductive Seasonality Of Tryonia Cheatumi (Gastropoda: Cochliopidae), The Phantom Tryonia, Kathryn E. Perez, Nina Noreika, Chad Norris, Marty Kelly, Melissa Lopez, Christina Ortega, Salma Ruiz Sandoval, Samantha Gonzalez, Weston Nowlin

Biology Faculty Publications and Presentations

We studied population density, population size, and reproductive seasonality of the Phantom Tryonia, Tryonia cheatumi (Pilsbry, 1935). This endangered freshwater snail is found only in the San Solomon Spring system, a cienega, or karst-based, arid-land freshwater spring system, in western Texas, USA. We sampled populations at seven locations in the system seasonally over a 2-yr period. San Solomon Spring, the system's largest spring and modified into a swimming pool, had the largest population of T. cheatumi, with an estimated 49 million individuals and a mean density as high as 23,626 ± 39,030 (individuals/m2 ± SD). There were seasonal differences …

Exploring Metapopulation-Scale Suppression Alternatives For A Global Invader In A River Network Experiencing Climate Change, Brian D. Healy, Phaedra Budy, Charles B. Yackulic, Brendan P. Murphy, Robert C. Schelly, Mark C. Mckinstry

Wildland Resources Faculty Publications

Invasive species can dramatically alter ecosystems, but eradication is difficult, and suppression is expensive once they are established. Uncertainties in the potential for expansion and impacts by an invader can lead to delayed and inadequate suppression, allowing for establishment. Metapopulation viability models can aid in planning strategies to improve responses to invaders and lessen invasive species’ impacts, which may be particularly important under climate change. We used a spatially-explicit metapopulation viability model to explore suppression strategies for ecologically-damaging invasive brown trout (Salmo trutta), established in the Colorado River and a tributary within Grand Canyon National Park. Our goals …

Defining The Current Distribution Of The Imperiled Black-Spotted Newt Across South Texas, Usa, Padraic S. Robinson, Drew R. Davis, Sean M. Collins, Richard J. Kline

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

The Black-spotted Newt (Notophthalmus meridionalis) is a chronically understudied salamander species, with many aspects of its natural history, ecology, and distribution poorly known. Previous studies using traditional methodologies have had limited success documenting N. meridionalis on the landscape, detecting individuals at 6% (7 of 114) and 1% (2 of 221) of sites surveyed. A novel environmental DNA (eDNA) assay was designed and implemented with the goals of assessing the current distribution of N. meridionalis across south Texas, USA, and better understanding the conditions for positive eDNA detections. We conducted eDNA sampling and traditional surveys at 80 sites throughout …

Writing An Existential Novel: An Environmental And Philosophical Exploration, Julia Whinston

Honors College

Halfway Through the Wood is a creative project guided by the question, does nature have intrinsic ethical, philosophical, and/or spiritual value, or do we project it there? As a subsidiary question, is our relationship with nature akin to our relationship with ourselves? The novel begins with a “man versus nature” conflict, exploring human relationships to land, then moves on to a conversation about self, which ultimately leads to an incredulous/existential discourse about interconnectedness. The novel explores the implications of experiencing grief alongside natural systems, and concludes that enmeshing oneself within a natural system is vital for discovering meaning after experiencing …

Monitoring Whitebark Pine Stand Health In The Central Washington Cascades, Nancy H. Parra, Teresa J. Lorenz, Taza D. Schaming, Alison Scoville

Student Published Works

Whitebark pine (Pinus albicaulis) plays a vital role in colonizing newly disturbed areas, providing shade for other tree species to germinate, and supplying food for a variety of birds and mammals, such as Clark’s Nutcrackers (Nucifraga columbiana) and grizzly bears (Ursus arctos horribilis). Decline of whitebark pine populations has been attributed to several factors, including white pine blister rust (Cronartium ribicola), mountain pine beetle (Dendroctonus ponderosae) outbreaks, and fire exclusion. In 2009, the U.S. Forest Service began to install permanent plots in whitebark pine stands in Washington and Oregon as …

Results Of The 2022 Vermont Farmer Conservation & Payment For Ecosystem Services Survey. Vermont Payment For Ecosystem Services Technical Research Report #3a, Alissa C. White

Reports and Policy Briefs

This survey was commissioned by the Vermont Soil Health and Payment for Ecosystem Services Working Group (VT PES Working Group) to gather farmer input on the development of payment for ecosystem services (PES) in Vermont for agriculture. In particular, the survey was intended to help set appropriate levels of compensation for participation in a soil health PES program, although additional information was gathered in the survey to inform the development of a new incentive program. The VT PES Working Group has explored the potential for a performance-based soil health PES program that would compensate farmers on the basis of environmental …

Rethinking Human-Local Wildlife Relations, Yin Chan

Critical and Creative Thinking Capstones Collection

The plight of suburban wildlife receives considerably less attention than that of exotic or endangered species despite facing similar threats due to the decline of their natural habitats as humans expand upon them. From the perspective of a reflective practitioner, this paper provides new avenues to rethink current views on human-local wildlife relations and answer some of the difficult questions surrounding the topic. The methodology of Action Research is employed to explore concepts relevant to human-local wildlife relations. A synthesized practical framework integrating Action Research with Permaculture Design is proposed to create models for mutually beneficial coexistence between local wildlife …

Can Financialization Save Nature? The Case Of Endangered Species, Diane-Laure Arjalies, Delphine Gibassier

Business Publications

The current biodiversity loss is dramatic. Over the past 50 years, more than 68% of the mammals, birds, amphibians, reptiles, and fish on earth have disappeared, putting the planet's survival and its inhabitants – including human beings – at risk (WWF, 2020). Financialization, or the transformation of nature into financial assets, is increasingly proposed as a solution to the biodiversity crisis. Proponents of financialization believe that assigning a monetary value to nature will incentivize human beings to protect habitats and their species. This article offers a four-mechanism model of nature’s financialization, explaining why it is virtually impossible to financialize nature. …

Invest In Farm Water Conservation To Curtail Buy And Dry, David E. Rosenberg

Publications

The term buy-and-dry plays to the fears of farm and ranch communities. In Owens Valley, CA in the early 1900s and Palo Verde Irrigation District, CA today, wealthy urban water providers buy up water rights, dry out farms and ranches, export purchased water out of basin to growing cities, or keep water in storage to counter reservoir draw down (James, 2021). As more farmers and ranchers sell their water rights, local businesses—irrigation, farm equipment, seed, and other agricultural firms—contract. Those contractions encourage more farmers and ranchers to sell 15 their water rights and farms. And a negative feedback loop gains …

Global Collision-Risk Hotspots Of Marine Traffic And The World’S Largest Fish, The Whale Shark, Freya C. Womersley, Nicolas E. Humphries, Nuno Queiroz, Marisa Vedor, Ivo Da Costa, Miguel Furtado, John P. Tyminski, Katya Abrantes, Gonzalo Araujo, Steffen S. Bach, Adam Barnett, Michael L. Berumen, Sandra Bessudo Lion, Camrin D. Braun, Elizabeth Clingham, Jesse E. M. Cochran, Rafael De La Parra, Stella Diamant, Alistair D. M. Dove, Christine L. Dudgeon, Mark V. Erdmann, Eduardo Espinoza, Richard Fitzpatrick, Jaime González Cano, Jonathan R. Green, Hector M. Guzman, Royale Hardenstine, Abdi Hasan, Fábio H. V. Hazin, Alex R. Hearn, Robert E. Hueter, Mohammed Y. Jaidah, Jessica Labaja, Felipe Ladino, Bruno C. L. Macena, John J. Morris Jr., Bradley M. Norman, Cesar Peñaherrera-Palma, Simon J. Pierce, Lina Maria Quintero, Dení Ramírez-Macías, Samantha D. Reynolds, Anthony J. Richardson, David P. Robinson, Christoph A. Rohner, David R. L. Rowat, Marcus Sheaves, Mahmood Shivji, Abraham B. Sianipar, Gregory B. Skomal, German Soler, Ismail Syakurachman, Simon R. Thorrold, D. Harry Webb, Bradley M. Wetherbee, Timothy D. White, Tyler Clavelle, David A. Kroodsma, Michele Thums, Luciana C. Ferreira, Mark G. Meekan, Lucy M. Arrowsmith, Emily K. Lester, Megan M. Meyers, Lauren R. Peel, Ana M. M. Sequeira, Victor M. Eguiluz, Carlos M. Duarte, David W. Sims

Biology Faculty Articles

Marine traffic is increasing globally yet collisions with endangered megafauna such as whales, sea turtles, and planktivorous sharks go largely undetected or unreported. Collisions leading to mortality can have population-level consequences for endangered species. Hence, identifying simultaneous space use of megafauna and shipping throughout ranges may reveal as-yet-unknown spatial targets requiring conservation. However, global studies tracking megafauna and shipping occurrences are lacking. Here we combine satellite-tracked movements of the whale shark, Rhincodon typus, and vessel activity to show that 92% of sharks’ horizontal space use and nearly 50% of vertical space use overlap with persistent large vessel (>300 …

Monarch Butterflies: Rearing Methodologies And The Impact Of Fungicide And Insecticide Exposures, Matthew Greiner

Department of Entomology: Dissertations, Theses, and Student Research

The North American migratory monarch butterfly, Danaus plexippus L., populations has experienced a ca. 90% decline over the past two decades. The decline is attributed to climate change, loss and degradation of overwintering habitat, and the loss of milkweed plants in the midwestern United States. The remaining milkweed stands often occur close to agricultural fields, and efforts to establish additional milkweed on the landscape focus on agricultural systems. However, milkweed plants near agricultural fields are likely exposed to pesticides that could adversely impact monarch caterpillars. Effective management of milkweed habitat supporting monarch caterpillars requires knowledge about the toxicological impacts of …

Roslyn Meadows Wetland: Health, Development, And Importance To Humans And The Environment, Margaret Menso

Antonian Scholars Honors Program

Wetlands must be protected because of their importance for everyday life. Wetlands mitigate floods, acquire and store greenhouse gases, and support recreation. To protect wetlands, community members must understand their importance and advocate for their health. A website was designed to inform community members of the history, health, and benefits of the Roslyn Meadows wetland, including descriptions of the town history, development plans, and wetland health. A wetland health evaluation program assessment (WHEP), performed in 2020, indicated the Typha marsh contained in the development to be in excellent health.

Variations In Plumage Wear In Three Closely Related Tidal Marsh Sparrow Species, Maeve Studholme

Honors College

Tidal marsh sparrow species like Saltmarsh Sparrows (Ammospiza caudacuta), Nelson’s Sparrows (Ammospiza nelsoni) and Seaside Sparrows (Ammospiza maritima) are particularly vulnerable to the environmental stressors related to climate change and human activity like sea-level rise, warming temperatures, and increased coastal development, as they nest in the grasses of tidal marsh ecosystems where the principal mode of nest mortality is flooding. With increased sea-level rise, these species may not be equipped to adapt to changing tidal cycles, and thus have reduced fitness and population sizes. Saltmarsh Sparrows are experiencing sharp declines in population, so it is more vital than ever to …

Abundance Of Shell-Boring Polychaete Worms And Other Fouling Organisms In Aquacultured Oysters From Maine Used For Reef Restoration In Great Bay, Nh, Haleigh Wright

Honors College

Restoration projects on the oyster reefs in Great Bay, NH have been active since 2009 with the most recent involving the transfer of oysters from Maine oyster farms into the Bay. In an attempt to prevent the transfer of non-native species from oyster farms to the reefs, samples of oysters from each farm were inspected for shell-boring polychaete infestations. Polydora websteri, a common shell-boring species worldwide, was in high abundance in reference samples from oyster farms in Great Bay and in samples from the restoration grounds, themselves. A second shell-boring species, provisionally identified as P. onagawaensis, is present on oyster …

Leveraging Land Easements For Grassland Bird Habitat Conservation, Amy N. Marigliano, Hayden E. Dubniczki, Sarah W. Westrick

Student Publications

In addressing the decline of North American grassland bird populations, it is important to consider the various interdisciplinary approaches that can be employed in their conservation. OECMs, or “other effective area-based conservation measures” encompass a wide array of strategies which can be leveraged to conserve natural landscapes and species. Land easements implemented by the Land Conservancy of Adams County (LCAC) are an example of one such strategy. The LCAC seeks primarily to preserve the rural character of Adams County but has more recently turned their focus toward environmental conservation. In partnering with the Land Conservancy, this case study aimed to …

Alleviating Human-Elephant Conflict Through Deterrent Fences And Environmental Monitoring In Southern Kenya, Sophia Carmen Corde

Masters Theses & Specialist Projects

Human-wildlife conflict is present across the world. In areas where human settlements overlap with elephant habitats, human-elephant conflict can result from crop raiding events, compromising farmers’ food and economic security, and putting humans and elephants in danger through farmer retaliation. Elephants raid crops primarily at night, when detection by humans is lowest, and during the dry season, as crops are developing towards harvest and natural forage quality drops. People living in these areas facing HEC have developed mitigation strategies to lessen the impacts and move towards coexistence. As a team member on the Elephants and Sustainable Agriculture in Kenya project, …

High-Frequency Accelerometer Recording Of Key Predatory Behaviors In Vipers: Validation And Case Study With Timber Rattlesnakes (Crotalus Horridus), Morgan L. Thompson, Richard H. Adams, Anna Tipton, Dominic L. Desantis

Graduate Research Showcase

High-frequency accelerometer recording of key predatory behaviors in vipers: validation and case study with Timber Rattlesnakes (Crotalus horridus)

Morgan Thompson, Richard H. Adams, Anna F. Tipton, and Dominic L. DeSantis

Tri-axial accelerometers (ACTs) are becoming increasingly common in studies of animal behavior wherein direct observation of subjects in nature is constrained or impossible. ACTs are small (< 1 g) piezo-electric (spring-like) sensors that measure three-dimensional acceleration (upward, downward, and side-to-side) derived from subject motion. When leveraged with advanced machine learning techniques, these data can enable precise automated classification of a wide range of movement-mediated behaviors. Until recently, ACTs were largely reserved for larger-bodied organisms or those most amenable to the temporary external attachment of devices. Ongoing ACT miniaturization has now expanded the breadth of organisms amenable to these methods. This project aims to expand on a recently developed framework for ACT monitoring in wild-ranging snakes, a group that has been mostly overlooked in biologging applications. We are currently conducting extensive captive validation trials for robust model training and testing to enable classification of predatory behaviors, including striking and ingestion of prey items, in Timber Rattlesnakes (Crotalus horridus). Following captive validation, we will translate this method to the field with a population of C. horridus in the lower Piedmont of middle Georgia to evaluate the efficacy of externally attached ACTs for remote and continuous monitoring of …

2022 Gray Wolf Questions And Answers, United States Fish And Wildlife Service

United States Fish and Wildlife: Staff Publications

2022 Gray Wolf Questions and Answers

What does the February 10, 2022, ruling mean?

How does this ruling affect wolves in the Northern Rocky Mountains?

When does the court decision to vacate the delisting rule go into effect?

What is the legal status of gray wolves as of this ruling?

Is the Service continuing its status review of wolves in the western United States?

Is emergency listing an option for the Northern Rocky Mountain population?

Are wolf hunts going to stop as a result of the court decision?

How does this ruling affect wolves in Yellowstone National Park?

Where can …

Why Sequence All Eukaryotes?, Mark Blaxter, John M. Archibald, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Federica Di Palma, Richard Durbin, Scott V. Edwards, Jennifer A.M. Graves, Kevin J. Hackett, Neil Hall, Erich D. Jarvis, Rebecca N. Johnson, Elinor K. Karlsson, W. John Kress, Shigehiro Kuraku, Mara K. N. Lawniczak, Kerstin Lindblad-Toh, Jose V. Lopez, Nancy A. Moran, Gene E. Robinson, Oliver A. Ryder, Beth Shapiro, Pamela S. Soltis, Tandy Warnow, Guojie Zhang, Harris A. Lewin

Biology Faculty Articles

Life on Earth has evolved from initial simplicity to the astounding complexity we experience today. Bacteria and archaea have largely excelled in metabolic diversification, but eukaryotes additionally display abundant morphological innovation. How have these innovations come about and what constraints are there on the origins of novelty and the continuing maintenance of biodiversity on Earth? The history of life and the code for the working parts of cells and systems are written in the genome. The Earth BioGenome Project has proposed that the genomes of all extant, named eukaryotes—about 2 million species—should be sequenced to high quality to produce a …

Conservation, Restoration, And Monitoring Plan For The Lower White River, Utah, Casey A. Pennock, William W. Macfarlane, Phaedra Budy, Justin Jimenez, Jerrad Goodell

Ecology Center Publications

In this report we present a conservation, restoration and monitoring plan for the lower White River, a major tributary of the Green River. The plan is intended to help guide conservation, restoration and management of the lower White River over the next several decades and is also developed as an adaptive management plan to facilitate learning. The recommended conservation and restoration actions are intended to maintain and enhance native riparian vegetation and instream habitat for native desert fishes including federally endangered Colorado Pikeminnow (Ptychocheilus lucius), federally endangered Razorback Sucker (Xyrauchen texanus), Speckled Dace (Rhinichthys osculus …

A Systematic Review Of The Global Freshwater Mussel Restoration Toolbox, Roland E. Eveleens, Catherine Febria Dr

Great Lakes Institute for Environmental Research Publications

1. Halting the global decline of freshwater mussels requires an improved understanding of the restoration approaches currently in use and the identification of shortcomings to inform the development of new ones. This article reviews published evaluations of restoration efforts on the ground and those identified or proposed in the literature. 2. This review found few reports of the effectiveness of restoration measures, and of those reported there was strong temporal and geographical bias. Reports were mostly recent and took place within mussel-diverse regions of the Global North (i.e. North America, Europe). 3. Efforts focused on population support encompassed relocation, translocation …

Status, Change, And Futures Of Zooplankton In The Southern Ocean, Nadine M. Johnston, Eugene J. Murphy, Angus Atkinson, Andrew J. Constable, Cédric Cotté, Martin Cox, Kendra L. Daly, Ryan Driscoll, Hauke Flores, Svenja Halfter, Natasha Henschke, Simeon L. Hill, Juan Höfer, Brian P. Hunt, So Kawaguchi, Dhugal Lindsay, Cecilia Liszka, Valerie Loeb, Clara Manno, Bettina Meyer, Evgeny A. Pakhomov, Matthew H. Pinkerton, Christian S. Reiss, Kate Richerson, Walker O. Jr., Deborah K. Steinberg, Kerrie M. Swadling, Geraint A. Tarling, Sally E. Thorpe, Devi Veytia, Peter Ward, Christine K. Weldrick, Guang Yang

Marine Science Faculty Publications

In the Southern Ocean, several zooplankton taxonomic groups, euphausiids, copepods, salps and pteropods, are notable because of their biomass and abundance and their roles in maintaining food webs and ecosystem structure and function, including the provision of globally important ecosystem services. These groups are consumers of microbes, primary and secondary producers, and are prey for fishes, cephalopods, seabirds, and marine mammals. In providing the link between microbes, primary production, and higher trophic levels these taxa influence energy flows, biological production and biomass, biogeochemical cycles, carbon flux and food web interactions thereby modulating the structure and functioning of ecosystems. Additionally, Antarctic …

A Systematic Map Of Human-Carnivore Coexistence, Cassandre C. Venumière-Lefebvre, Stewart W. Breck, Kevin R. Crooks

USDA Wildlife Services: Staff Publications

Carnivore populations globally have largely declined, and coexistence, where humans and carnivores share landscapes, plays a crucial role in carnivore conservation. However, the term “coexistence” is often used in scientific and popular literature without being clearly defined. Herein, we provide a global perspective on what coexistence is and how it is studied. We conducted a systematic map of 366 articles published between 1987 and 2020 to characterize human-carnivore coexistence literature according to coexistence definitions, temporal trends, geographic and taxonomic focus, and four thematic aspects of coexistence: carnivore ecology, human endeavors, social conflict and human-carnivore conflict. We used chi-squared tests and …

Emerging Hot Spot Analysis To Indicate Forest Conservation Priorities And Efficacy On Regional To Continental Scales: A Study Of Forest Change In Selva Maya 2000-2020, Nicholas Cuba, Laura A. Sauls, Anthony J. Bebbington, Denise Humphreys Bebbington, Avecita Chicchon, Pilar Delpino Marimón, Oscar Diaz, Susanna Hecht, Susan Kandel, Tracey Osborne, Rebecca Ray, Madelyn Rivera, John Rogan, Viviana Zalles

Geography

Despite the importance of preserving contiguous tropical forest areas to maintain biodiversity and terrestrial carbon stocks, methodological challenges continue to hinder broad-scale analysis of threats to these forests. Emerging Hot Spot Analysis (EHSA) is a spatial-statistical method that conveys complex information about the temporal dynamics of deforestation across a range of moderate to coarse spatial scales. Using Global Forest Change (GFC) data as inputs, EHSA produces spatially comprehensive, gridded outputs that represent a standardized, reproduceable way to instantiate contiguous forest tracts as spatial objects. Doing so allows aggregation of other GFC-derived values and analysis of alternative geographic configurations besides sub-national …