Life Sciences Commons^™

Population Physiology, Demography, And Genetics Of Side-Blotched Lizards (Uta Stansburiana) Residing In Urban And Natural Environments, Spencer B. Hudson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Wildlife populations across the globe are poised to lose their natural habitat to urbanization, yet there is limited information on how different species handle living in cities. Animals in urban environments are often susceptible to novel stressors, which can threaten their individual health and population viability. The physiological characteristics of animals, such as those related to metabolic hormones, oxidative stress, and immunity, are expected to be important for survival in this context. If so, animals persisting in urban areas may demonstrate physiological differences from their natural counterparts, perhaps due to evolutionary change. These potential outcomes have been documented in birds …

Portuguese Society Of Pastures And Forages, J. Potes, E. V. Lourenço, T. Carita

IGC Proceedings (1997-2023)

The Portuguese Society of Pastures and Forages (SPPF) was born from a course on pastures and forages held in the National Plant Breeding Station of Elvas (where the headquarters of SPPF are located) in 1979. It was organised by the head of the Pastures and Forages Department, David Gomes Crespo, who was the first and founder member. According to Abreu et al. (1999), the structure established was that of a Scientific Society and was considered by the Government as a Service of Public Interest. It gathered inspiration from the British Grassland Society, the Association Francaise pour la Production Fourragére, …

Monitoring The Effects Of Poultry Waste On Fishes And Macroinvertebrates In The Sabine River, Karley R. Parker

Biology Theses

Freshwater is a vital resource that provides life and sustainability for almost all organisms on Earth. It is important to maintain its health and protect it from emerging pollutants that pose a threat to the organisms that use it. Pollution continues to threaten the well-being of the environment’s freshwater sources all around the world that could lead to damaging effects in the future. The Sabine River is a major freshwater resource in the east Texas and western Louisiana areas that provides a habitat for thousands of organisms as well as other domestic uses for humans. In 2019, a waste discharge …

Applications Of Environmental Dna (Edna) To Detect Subterranean And Aquatic Invasive Species: A Critical Review On The Challenges And Limitations Of Edna Metabarcoding, Sakib Tahmid Rishan, Richard J. Kline, Md Saydur Rahman

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

The world is struggling to solve a devastating biodiversity loss that not only affects the extinction of treasured species and irreplaceable genetic variation, but also jeopardizes the food production, health, and safety of people. All initiatives aimed to conserve biodiversity rely heavily on the monitoring of both species and populations to get accurate spatial patterns and overall population assessments. Conventional monitoring techniques, such as visual surveys and counting individuals, are problematic due to challenges in identifying cryptic species or immature life stages. Environmental DNA (eDNA) is a relatively new technology that has the potential to be a faster, non-invasive, and …

Improving The Land Trust Model’S Impact On Environmental Conservation In Northern California, Peter Talbot

Master's Projects and Capstones

For years, the land trust sector of California and much of the United States has operated with a dollars and acres mentality that has prioritized fundraising as a result of acreage protected. Within California, nearly 5.8 million acres of land have been protected by 132 land trusts throughout the state. To accommodate for the diverse cross-section of land and the many needs of the population, land trusts take on numerous shapes and sizes. A unique aspect of this diversity is the rich agricultural and natural spaces found throughout the state. This mix of land and variety of land uses has …

Genetic Population Structure And Effective Number Of Breeders In Systems Across The Range Of The Gulf Sturgeon, Jacob Zona

Master's Theses

Gulf sturgeon (Acipenser oxyicnhus desotoi) are a large, anadromous fish belonging to an ancient lineage that diverged as early as 400 MYA. Overfishing for meat and caviar during the early 1900’s reduced their range and abundance and continued habitat destruction and mortality have limited their ability to recover, leading to their listing under the Endangered Species Act. This study uses genetic techniques to determine the effective number of breeders for multiple spawning groups of Gulf sturgeon in river systems across their range to set a baseline for tracking reproductive success of the species. Accompanying genetic information relevant to …

Variability In Billfish Vertical Distribution And Fishing Interactions Driven By Environmental Conditions In The Eastern Tropical Pacific Ocean, H. E. Blondin, D. E. Haulsee, Ryan Logan, Mahmood Shivji, E. R. Hoffmayer, J. H. Walker, J. M. Dean, E. L. Hazen, L. B. Crowder

Biology Faculty Articles

Blue marlin (Makaira nigricans) and sailfish (Istiophorus platypterus) are ecologically important predators and valuable species throughout the world’s recreational, commercial, and subsistence fisheries. Comparing multi-species vertical habitat use can inform ecological uncertainties such as inter-species competition, as well as relative vulnerabilities to fishing activities. In this study, we identified key differences in both depth use and which environmental variables drive these selections, which highlights the variability in the catchability both as target species in recreational fisheries and bycatch in commercial fisheries. To understand these two species’ vertical habitat use, we examined depth profiles from 26 sailfish …

Save Maine Lobstermen Website, June 2023, Maine Lobstermen's Association, Sutherland Weston

History of Maine Fisheries

Screen capture of the #SaveMaineLobstermen website created on June 2, 2023. The screen capture includes the web pages: "The Issue," "The Solution," "Join the Fight," "In Court," "Shop to Support," and "Contact." The website was created in reaction to the 2021 call by the National Marine Fisheries Services (NMFS) "ten-year whale plan that requires the Maine lobster fishery to reduce its already minimal risk to right whales by 98 percent."

This document includes all material available through the website on June 2, 2023, regarding the September 2021 lawsuit filed by the Maine Lobstermen's Association (MLA) challenging the 10-year whale plan. …

An Exploration Of Palauan Fishing Methods And Fisheries: A Study For The Conservation Of Dugongs, Mia Glover

Electronic Theses and Dissertations

The dugong (Dugong dugon) is an important marine mammal in Palau. However, current population dynamics are not well understood. This study aimed to connect scientific data with local knowledge by examining the social implications of changing fishing methods and their impact on dugong population dynamics in the face of climate change and fisheries commercialization. Through interviews with local fishers, it was found that destructive fishing methods like trawling and long lining have led to habitat loss and degradation for dugongs. These tactics, driven by economic factors, have disrupted the delicate balance between human activities and the preservation of dugong habitats, …

Practical Solutions To The Invasion Of Lionfish In Utila, Honduras: Science, Education, Food, And Jewelry, Carolyn Corley

Undergraduate Honors Theses

Lionfish (Pterois sp.) are invasive species capable of devastating coral reef ecosystems due to their lack of predators, large appetites, generalist diet, high fecundity, and rapid spawning rates. As lionfish have expanded their distribution across the Caribbean, many conservation groups have taken it upon themselves to systematically remove these predators from environments where they are threatening native species. However, few have involved the community the way I observed while interning with the Whale Shark and Oceanic Research Center in Utila, Honduras. Protecting coral reefs is extremely important, especially in small communities like Utila, where the majority of people’s …

Determining The Impact Of Post-Harvest Water Management On Chironomid Abundance, Agrochemical Biomass And Potential Trophic Biomagnification, Mason Thomas

Theses and Dissertations

Agriculture has diminished shorebirds’ natural habitat in the Mississippi Alluvial Valley. Remaining natural stopover sites are supplemented with agricultural fields during the fall and winter. This study evaluates the impact of 4 different post-harvest water management strategies on shorebird food abundance and potential agrochemical biomagnification. Chironomid samples estimated abundance, biomass, and chironomid agrochemical concentration in each field. A risk assessment of agrochemical biomagnification to shorebirds was made across all treatments. Of treatments represented on all study sites, winter treatment had greatest chironomid abundance and biomass. Models indicated that days since flood initiation, start date, and temperature are significant predictors of …

Detecting Native Freshwater Mussels In Pennsylvania Waterways: Comparison & Validation Of Environmental Dna Methods, Meredith Bennett

Electronic Theses and Dissertations

North America is home to approximately one third of the world's freshwater mussel species. They are highly imperiled organisms due to habitat destruction and invasive species. Traditional surveys rely on visual identification of mussels, but individuals tend to be rare and difficult to identify. An alternative method is to extract environmental DNA (eDNA) from water samples, which has advantages over traditional sampling, including less sampling effort and fewer hazards to researchers and organisms. We conducted a review of the two main eDNA approaches: single-species detection and metabarcoding. We also developed and validated metabarcoding primers for the detection of native mussels. …

Dolphin Behavioral Responses To Uncrewed Aerial Systems As A Function Of Exposure, Height, And Type, Savannah Damiano

Electronic Theses and Dissertations

Uncrewed aerial systems (UAS) are becoming a standard tool in the study of cetaceans, however, a comparative assessment of animal responses to UAS has not been established to gauge the most effective systems for cetacean study. We utilized Dolphin Quest Bermuda’s eleven bottlenose dolphins as subjects for such an investigation taking place over five weeks in 2022 and five weeks in 2023. The dolphins were evaluated for investigative behavioral responses to six off-the-shelf UAS types and a custom fixed wing system. Each UAS was flown in decreasing height vertically above the main dolphin lagoon to evaluate dolphin behavioral responses in …

Virtually The Same? Understanding Virtual And F2f Farmer Audiences, Laura Witzling, Eric Williams, Dara M. Wald, Jacqueline Comito, Elizabeth Ripley

The Journal of Extension

Agricultural and extension educators frequently employ a variety of methods to provide farmers with information about conservation practices. The introduction of virtual programming brought on in response to the COVID-19 pandemic set the stage for analysis of farmer outreach preferences with respect to face-to-face (F2F) versus virtual outreach. Using survey data of individuals who participated in field days in Iowa, we segmented participants based on their F2F or virtual attendance. We compared the groups based on key variables such as water quality concerns, communication behaviors, outreach preferences, and demographics. Our work suggests that a broad and dynamic communication strategy, including …

Past And Present Patterns Of Neutral And Adaptive Genetic Diversity In Wild Mandrills (Mandrillus Sphinx), Anna Weber

University of New Orleans Theses and Dissertations

Although primates have fascinated researchers and the public alike for generations, one species that has remained enigmatic is the mandrill (Mandrillus sphinx), a large Cercopithecine monkey endemic to Central Africa. Mandrills are currently in decline due to bushmeat hunting, urbanization, and habitat loss. Neutral and adaptive genetic diversity are important tools for understanding evolutionary history and future viability, since diversity influences a species’ ability to adapt to a changing environment. However, thus far, minimal genetic information has been available for wild mandrills. Because of the dense vegetation in their tropical forest habitat, studying wild mandrills has proven to …

East Tennessee Spatial And Temporal Species-Specific Bat Activity Patterns, Seth Morelock

Undergraduate Honors Theses

Determining the activity among species-specific bat populations within specific habitat selections can help contribute to the conservation of Appalachian bat species. This study examines the differences in species-specific bat activity patterns between three ponds of variable sizes and a southeast-facing open field with a wooded edge. Four Song Meter SM4BAT FS bioacoustics detectors were used on a 15-acre property in Fall Branch, TN, with a wildlife acoustics detector being placed at three ponds and one field. There were three stages of data collection for this study which all took place during 2023. The first stage was during the spring (March …

Using Podcasts To Bring National Estuarine Research Reserves Into The Classroom For Grades 6-12, Kaitlyn M. Dirr

Senior Theses

In a typical classroom setting, there are significant challenges to exposing students to concepts related to earth sciences and the environment. These challenges are exacerbated when conveying lessons about geographic areas with limited access, such as oceans and coastlines (Louv, 2010). It is now more important than ever for environmental education to improve and adapt to our changing world. Educators may have the opportunity to bring these subjects to life by using media content such as podcasts to introduce students to new places and the scientists, managers and educators that work in those spaces. In the United States, there exists …

Population Genetics And Morphometrics Of Overwintering Swamp Sparrows (Melospiza Georgiana) At Panola Mountain State Park, Ashley Mcmahon

Graduate Research Showcase

Grassland birds are facing the greatest decline of any bird guild in North America due to widespread loss of grassland habitats. Conservation efforts tend to focus on birds that breed in grasslands, but grassland habitat loss will also negatively affect populations that overwinter in grasslands. Three Swamp Sparrow subspecies (Melospiza georgiana georgiana, M. g. ericrypta, M. g. nigrescens) segregate on at least some of their breeding grounds but may mix on wintering grounds, which often includes grasslands. Philopatric passerines often also segregate by sex on wintering grounds. Thus, loss of overwintering grasslands may disproportionately impact both subspecies and sex, leading …

Application Of Molecular Markers In Genetic Resources Management Of Perennial Ryegrass, R. Van Treuren

IGC Proceedings (1997-2023)

Key points

1. Molecular markers are effective tools to support traditional approaches in plant genetic resources management.
2. Genetic diversity assessed for perennial ryegrass by AFLP analysis revealed differentiation of populations occurring in traditional Dutch grasslands from commercial varieties, but not from populations occurring in Dutch nature reserves.
3. No specific conservation measures were recommended to maintain the genetic diversity of perennial ryegrass occurring in traditional Dutch grasslands.
4. Pollination rates estimated by microsatellite analysis for a rejuvenated population of a perennial ryegrass genebank accession were very well described by an inverse quadratic function of inter-plant distance between potential mating pairs, while recorded flowering …

Increasing Capture Rates Of Grassland Birds Over Thirteen Years Indicates Successful Restoration, Katie Stumpf, Charles Muise

Georgia Journal of Science

Grassland bird populations are being lost at an alarming rate due to human modifications to grassland ecosystems. Grassland restoration has been shown to mitigate population declines for many species that use these habitats at some point in their annual cycles. We examined capture rates of adult, breeding, and hatch-year birds at a restored grassland site in the piedmont of central Georgia to determine whether colonization, breeding success, hatching success, and recruitment processes were impacting populations of grassland birds. We banded birds approximately twice per month from January 2009 through December 2021 at Panola Mountain State Park. Restoration efforts started in …

The Long-Term Effects Of Grazing On Desert Soils In The Great Basin, Alexander Olson, Neil Hansen, Loreen Allphin, Sam Spackman

Library/Life Sciences Undergraduate Poster Competition 2023

The Desert Experimental Range in the Great Basin region of southwestern Utah was created by President Hoover in 1933 to study cold-desert rangeland ecology and observe the effects of cattle and sheep grazing on the arid ecosystem. This 225 square kilometer area was initially set up with a series of paddocks and exclosures. Various grazing intensities throughout multiple seasons were permitted within the paddocks since its origin. For the purposes of this research, samples were taken within a given exclosure and the greater paddock to monitor the long term effects of grazing and its permanent or semi-permanent impacts. Samples were …

New Species Discovery In Eriastrum (Polemoniaceae) In The Californian Red Mountains, Kaitlyn Pankratz, Leigh Johnson

Library/Life Sciences Undergraduate Poster Competition 2023

Characterized in the flowering plant family Polemoniaceae by wooly hairs on the calyces and bracts associated with the flowers and found in dry areas of western North America (1).

Has Coral Abundance In Hawaii Changed Since 2007?, Natalie Wride, Richard Gill Ph.D

Library/Life Sciences Undergraduate Poster Competition 2023

2nd place poster design

Hypothesis: Molokai, Hawaii’s southern fringing reef has experienced a decrease in coral abundance from 2007 to 2022.

Chromosome-Length Assembly Of The Baikal Seal (Pusa Sibirica) Genome Reveals A Historically Large Population Prior To Isolation In Lake Baikal, Aliya Yakupova, Andrey Tomarovsky, Azamat Totikov, Violetta R. Beklemisheva, Maria Logacheva, Polina Perelman, Aleksey Komissarov, Pavel Dobrynin, Ksenia Krasheninnikova, Gaik Tamazian, Natalya A. Serdyukova, Michael Rayko, Tatiana Bulyonkova, Nikolay Cherkasov, Vladimir Pylev, Vladimir Peterfeld, Aleksey Penin, Elena Balanovska, Alla L. Lapidus, Dna Zoo Consortium, Stephen James O'Brien, Alexander S. Graphodatsky, Klaus-Peter Koepfli, Sergey Kliver

Biology Faculty Articles

Pusa sibirica, the Baikal seal, is the only extant, exclusively freshwater, pinniped species. The pending issue is, how and when they reached their current habitat—the rift lake Baikal, more than three thousand kilometers away from the Arctic Ocean. To explore the demographic history and genetic diversity of this species, we generated a de novo chromosome-length assembly, and compared it with three closely related marine pinniped species. Multiple whole genome alignment of the four species compared with their karyotypes showed high conservation of chromosomal features, except for three large inversions on chromosome VI. We found the mean heterozygosity of the studied …

Why The Delay In Recognizing Terrestrial Obligate Cave Species In The Tropics?, Francis G. Howarth

International Journal of Speleology

“Nothing could possibly live there!” They believed. Indeed, until recently, few specialized cave- adapted animals were known from volcanic, tropical, or oceanic island caves, and plausible theories had been put forward to explain their absence. But assume nothing in science! One must illuminate, explore, and survey habitats before declaring them barren. Our understanding of cave biology changed dramatically about 50 years ago following the serendipitous discovery of cave-adapted terrestrial arthropods in Brazil and on the young oceanic islands of the Galápagos and Hawai‘i. These discoveries and subsequent studies on the evolutionary ecology of cave animals have revealed a remarkable hidden …

Nutritive Value For Finishing Beef Steers Of Wheat Grain Conserved By Different Techniques, P. Stacey, P. O'Kiely, A. P. Moloney, F. P. O'Mara

IGC Proceedings (1997-2023)

Wheat grain harvested at dry matter (DM) concentrations above 860 g/kg is slow to deteriorate during long-term storage. However, high moisture grain (HMG) ranging from below 600 to 750 g DM/kg is conserved on some farms in the form of anaerobic storage of acid-treated, rolled wheat (AR) and urea-treated whole-wheat (UN) (Stacey et al., 2003). This experiment quantified the nutritive value for beef cattle of standard wheat grain (propionic acid-treated and rolled:PR) compared to AR and UN at different levels of intake.

American Eel (Anguilla Rostrata) And Other Fishes As Surveyed By Environmental Dna In The Bronx River And Hudson River Watershed, Sam C. Chin

Dissertations, Theses, and Capstone Projects

Mounting an effective response to the threats faced by freshwater fish may require expansions to aquatic biomonitoring in excess of what is feasible using the capture-based survey techniques currently relied upon by natural resource managers. Methods for analyzing environmental DNA (eDNA) are emerging as a minimally invasive and cost-effective approach for surveying fish and other organisms. By detecting taxon-specific DNA sequences recovered from environmental samples (e.g. water, sediment), eDNA methods are able to infer species presence from samples that can be collected rapidly with simple equipment. In many cases, eDNA detection rates of fish species have been shown to meet …

Habitat Suitability Models For Endangered Hawaiian Flora, Bronwyn Meldrum, Richard Gill

Library/Life Sciences Undergraduate Poster Competition 2023

Hawaii contains the highest percentage of endangered and threatened flora in the United States. Restoration is expensive and time-consuming, and most replanting failures are mainly due to incorrect habitat. Without understanding the ideal habitat of endangered plants such as ohai (Sesbania tomentosa) and aweoweo papa (Chenopodium oahuense), it is impossible to know what areas the Molokai Land Trust should prioritize in conservation and restoration.

Rhetorics Of Species Revivalism And Biotechnology – A Roundtable Dialogue, Eva Kasprzycka, Charlotte Wrigley, Adam Searle, Richard Twine

Animal Studies Journal

This informal dialogue contextualises and explores contemporary practices of nonhuman animal gene-modification in de-extinction projects. Looking at recent developments in biotechnology’s role in de-extinction sciences and industries, these interdisciplinary scholars scrutinise the neoliberal impetus driving ‘species revivalism’ in the wake of the Capitalocene. Critical examinations of species integrity, cryo-preservation, techno-optimism, rewilding initiatives and projects aimed at restoring extinct animals such as the woolly mammoth and bucardo are used to map some of the necessary restructuring of conservation policies and enterprises that could secure viably sustainable – and just – futures for nonhuman animals at risk of extinction. The authors question …

Comparing Pollinator Communities: Onu’S Swanberg Sanctuary V. Midewin National Tallgrass Prairie, Stephanie Clark

Pence-Boyce STEM Student Scholarship

Pollinators play a key role in both ecosystem diversity and agricultural productivity [1]. Declines for pollinators have been seen across the globe and have been linked to agriculture and urbanization [2]. Several species in Illinois have declined so severely, they are now endangered or of significant conservation concern [1]. Past ONU students have collected data on the bees in Northeast IL. However, there is no data for what species are at the Sanctuary. This study will provide baseline data for future studies and by comparing with Midewin, a mature restoration, we can gain an understanding of distinctiveness.