Eukaryotic Microbes In The Deep Sea: Abundance, Diversity, And The Effect Of Pressure,
2012
Old Dominion University
Eukaryotic Microbes In The Deep Sea: Abundance, Diversity, And The Effect Of Pressure, Danielle Morgan-Smith
OES Theses and Dissertations
The dark ocean is vast, high in pressure, cold, and scarce in resources, but has been shown to support a diverse and active microbial community wherever it is studied. Such studies, however, are scarce due to the difficulty of sampling at such depths, and are difficult to interpret due to compounding effects of pressure and temperature on physiology. Protists, functionally defined as the microbial portion of the domain Eukarya, are particularly neglected in studies of deep-sea microbiology. Here, I present three studies on microbial eukaryotes in the deep sea: first, a study of the abundance of microbial eukaryotes in the …
Grazing On Synechococcus Spp. By The Red-Tide Dinoflagellate Karenia Brevis: Implications For Bloom Dynamics In The Gulf Of Mexico,
2012
Old Dominion University
Grazing On Synechococcus Spp. By The Red-Tide Dinoflagellate Karenia Brevis: Implications For Bloom Dynamics In The Gulf Of Mexico, Leo A. Procise
OES Theses and Dissertations
Karenia brevis, the toxic dinoflagellate responsible for massive red tides in the Gulf of Mexico (GOM), causes fish kills, shellfish poisoning, and acute respiratory irritation in humans. Bloom initiation and maintenance have been linked to the physical environment as well as various nutrient input mechanisms. To date, efforts to quantify nitrogen (N) sources fueling K. brevis blooms in the GOM have not included mixotrophic grazing although many dinoflagellates, including K. brevis, are known to be capable of mixotrophy. This dissertation reports field and laboratory results demonstrating that natural bloom populations and K. brevisisolates from the West Florida …
A New Phase Speciation Leaching Procedure For The Determination Of Metals In Oxic And Anoxic Sediments,
2012
Old Dominion University
A New Phase Speciation Leaching Procedure For The Determination Of Metals In Oxic And Anoxic Sediments, Brandon R. Gipson
OES Theses and Dissertations
Toxic trace elements such as cadmium, lead, chromium, and arsenic released by human activities can accumulate in marine and estuarine sediments, where these metals are often sequestered until local environmental changes (e.g., redox, salinity, and/or pH) allow these elements to be reintroduced into the food web. In order to assess the extent of toxic trace element contamination in sediment, numerous leaching schemes have been developed that separate sediment-bound trace metals into operationally defined geochemical phases. These "phase speciation" leaching schemes are typically designed with the purpose of being used on either oxic or anoxic sediments. However, natural sediments often contain …
High Resolution Determination Of Nanomolar Concentrations Of Dissolved Reactive Phosphate In Ocean Surface Waters Using Long Path Liquid Waveguide Capillary Cells (Lwcc) And Spectrometric Detection,
2012
Old Dominion University
High Resolution Determination Of Nanomolar Concentrations Of Dissolved Reactive Phosphate In Ocean Surface Waters Using Long Path Liquid Waveguide Capillary Cells (Lwcc) And Spectrometric Detection, Louise A. Zimmer, Gregory A. Cutter
OES Faculty Publications
In the last decade, long path length, low volume, liquid waveguide capillary cells (LWCC) in conjunction with conventional nutrient auto-analyzers have been applied to determinations of nanomolar levels of phosphate, nitrate, and nitrite in oligotrophic waters. This article reports a high resolution, real-time, continuous method for nanomolar dissolved reactive phosphate measurements in ocean surface waters with data logging every 30 seconds for up to 16 consecutive hours. Surface seawater is pumped continuously from a shipboard underway tow-fish unit to a helium gas-segmented, continuous-flow, nutrient auto-analyzer modified with a 250 cm LWCC. To circumvent baseline instability due to reagents, a parallel …
Rapid And Noncontaminating Sampling System For Trace Elements In Global Ocean Surveys,
2012
Old Dominion University
Rapid And Noncontaminating Sampling System For Trace Elements In Global Ocean Surveys, Gregory A. Cutter, Kenneth W. Bruland
OES Faculty Publications
A system for the rapid and noncontaminating sampling of trace elements with volumes of up to 36 L per depth and including the dissolved and particulate phases has been developed for ocean sections that are a crucial part of programs such as International GEOTRACES. The system uses commercially available components, including an aluminum Seabird Carousel with all titanium pressure housings for electronics and sensors to eliminate zinc sacrificial anodes and holding twenty-four 12 L GO-FLO bottles, and a 7500 m, 14 mm Vectran conducting cable (passing over an A-frame with nonmetallic sheave) spooled onto a traction winch. The GO-FLO bottles …
Δ13c Is A Signature Of Light Availability And Photosynthesis In Seagrass,
2012
Old Dominion University
Δ13c Is A Signature Of Light Availability And Photosynthesis In Seagrass, Xingping Hu, David J. Burdige, Richard C. Zimmerman
OES Faculty Publications
We explored the role of light-saturated (carbon-limited) photosynthesis on δ¹³C of turtlegrass (Thalassia testudinum Banks ex Konig) populations from the clear, blue waters of the Great Bahama Bank and the turbid, green waters of Florida Bay using field observations and radiative transfer models. Consistent with numerous previous observations, leaf δ¹³C decreased significantly with water depth in both regions. However the δ¹³C for Bahamas turtlegrass was 3 parts per thousand heavier than that for Florida Bay turtlegrass at equivalent depths, and broadband irradiance explained even less of the δ¹³C variations than depth. Instead, leaf δ¹³C showed a stronger relationship to …
An Introduction To Ecology Of Infectious Diseases - Oysters And Estuaries,
2012
Old Dominion University
An Introduction To Ecology Of Infectious Diseases - Oysters And Estuaries, Eileen E. Hofmann, Susan E. Ford
OES Faculty Publications
Infectious diseases are recognized as an important factor regulating marine ecosystems (Harvell et al., 1999, 2002, 2004; Porter et al., 2001; McCallum et al., 2004; Ward and Lafferty, 2004; Stewart et al., 2008; Bienfang et al., 2011). Many of the organisms affected by marine diseases have important ecological roles in estuarine and coastal environments and some are also commercially important. Outbreaks of infectious diseases in these environments, referred to as epizootics, can produce significant population declines and extinctions, both of which threaten biodiversity, food web interactions, and ecosystem productivity (Harvell et al., 2002, 2004).
The Role Of Larval Dispersal In Metapopulation Gene Flow: Local Population Dynamics Matter,
2012
Old Dominion University
The Role Of Larval Dispersal In Metapopulation Gene Flow: Local Population Dynamics Matter, Daphne M. Munroe, John M. Klinck, Eileen E. Hofmann, Eric N. Powell
OES Faculty Publications
The degree of genetic connectivity among populations in a metapopulation has direct consequences for species evolution, development of disease resistance, and capacity of a metapopulation to adapt to climate change. This study used a metapopulation model that integrates population dynamics, dispersal, and genetics within an individual-based model framework to examine the mechanisms and dynamics of genetic connectivity within a metapopulation. The model was parameterized to simulate four populations of oysters (Crassostrea virginica) from Delaware Bay on the mid-Atlantic coast of the United States. Differences among the four populations include a strong spatial gradient in mortality, a spatial gradient …
Introduction To Special Section On Recent Advances In The Study Of Optical Variability In The Near-Surface And Upper Ocean,
2012
Old Dominion University
Introduction To Special Section On Recent Advances In The Study Of Optical Variability In The Near-Surface And Upper Ocean, T. Dickey, M. L. Banner, P. Bhandari, T. Boyd, L. Carvalho, O. Wurl
OES Faculty Publications
Optical variability occurs in the near-surface and upper ocean on very short time and space scales (e.g., milliseconds and millimeters and less) as well as greater scales. This variability is caused by solar, meteorological, and other physical forcing as well as biological and chemical processes that affect optical properties and their distributions, which in turn control the propagation of light across the air-sea interface and within the upper ocean. Recent developments in several technologies and modeling capabilities have enabled the investigation of a variety of fundamental and applied problems related to upper ocean physics, chemistry, and light propagation and utilization …
Novel Lineages Of Prochlorococcus And Synechococcus In The Global Oceans,
2012
Old Dominion University
Novel Lineages Of Prochlorococcus And Synechococcus In The Global Oceans, Sijun Huang, Steven W. Wilhelm, H. Rodger Harvey, Karen Taylor, Nianzhi Jiao, Feng Chen
OES Faculty Publications
Picocyanobacteria represented by Prochlorococcus and Synechococcus have an important role in oceanic carbon fixation and nutrient cycling. In this study, we compared the community composition of picocyanobacteria from diverse marine ecosystems ranging from estuary to open oceans, tropical to polar oceans and surface to deep water, based on the sequences of 16S-23S rRNA internal transcribed spacer (ITS). A total of 1339 ITS sequences recovered from 20 samples unveiled diverse and several previously unknown clades of Prochlorococcus and Synechococcus. Six high-light (HL)-adapted Prochlorococcus clades were identified, among which clade HLVI had not been described previously. Prochlorococcus clades HLIII, HLIV and …
Diversity, Distribution, And Expression Of Diazotroph Nifh Genes In Oxygen-Deficient Waters Of The Arabian Sea,
2012
Old Dominion University
Diversity, Distribution, And Expression Of Diazotroph Nifh Genes In Oxygen-Deficient Waters Of The Arabian Sea, Amal Jayakumar, Mamoon M. D. Al-Rshadat, Bess B. Ward, Margaret R. Mulholland
OES Faculty Publications
The Arabian Sea oxygen minimum zone (OMZ), the largest suboxic region in the world's oceans, is responsible for up to half of the global mesopelagic fixed nitrogen ( N ) loss from the ocean via denitrification and anammox. Dinitrogen (N2) fixation is usually attributed to cyanobacteria in the surface ocean. Model prediction and physiological inhibition of N2 fixation by oxygen, however, suggest that N2 fixation should be enhanced near the oxygen-deficient zone (ODZ) of the Arabian Sea. N2 fixation and cyanobacterial nifH genes (the gene encoding dinitrogenase reductase) have been reported in surface waters overlying …
Database Of Diazotrophs In Global Ocean: Abundance, Biomass, And Nitrogen Fixation Rates,
2012
Old Dominion University
Database Of Diazotrophs In Global Ocean: Abundance, Biomass, And Nitrogen Fixation Rates, Y. W. Luo, S. C. Doney, L. A. Anderson, M. Benavides, I. Berman-Frank, A. Bode, S. Bonnet, K. H. Boström, D. Böttjer, D. G. Capone, M. R. Mulholland
OES Faculty Publications
Marine N2 fixing microorganisms, termed di-azotrophs, are a key functional group in marine pelagic ecosystems. The biological fixation of dinitrogen (N2) to bioavailable nitrogen provides an important new source of nitrogen for pelagic marine ecosystems and influences primary productivity and organic matter export to the deep ocean. As one of a series of efforts to collect biomass and rates specific to different phytoplankton functional groups, we have constructed a database on diazotrophic organisms in the global pelagic upper ocean by compiling about 12 000 direct field measurements of cyanobacterial diazotroph abundances (based on microscopic cell counts or …
Impact Of Abrupt Deglacial Climate Change On Tropical Atlantic Subsurface Temperatures,
2012
Old Dominion University
Impact Of Abrupt Deglacial Climate Change On Tropical Atlantic Subsurface Temperatures, Matthew W. Schmidt, Ping Chang, Jennifer E. Hertzberg, Theodore R. Them Ii, Link Li, Bette L. Otto-Bliesner
OES Faculty Publications
Both instrumental data analyses and coupled ocean-atmosphere models indicate that Atlantic meridional overturning circulation (AMOC) variability is tightly linked to abrupt tropical North Atlantic (TNA) climate change through both atmospheric and oceanic processes. Although a slowdown of AMOC results in an atmospheric-induced surface cooling in the entire TNA, the subsurface experiences an even larger warming because of rapid reorganizations of ocean circulation patterns at intermediate water depths. Here, we reconstruct high-resolution temperature records using oxygen isotope values and Mg/Ca ratios in both surface- and sub-thermocline-dwelling planktonic foraminifera from a sediment core located in the TNA over the last 22 ky. …
Deglacial Variability Of Antarctic Intermediate Water Penetration Into The North Atlantic From Authigenic Neodymium Isotope Ratios,
2012
Old Dominion University
Deglacial Variability Of Antarctic Intermediate Water Penetration Into The North Atlantic From Authigenic Neodymium Isotope Ratios, Ruifang C. Xie, Franco Marcantonio, Matthew W. Schmidt
OES Faculty Publications
Understanding intermediate water circulation across the last deglacial is critical in assessing the role of oceanic heat transport associated with Atlantic Meridional Overturning Circulation variability across abrupt climate events. However, the links between intermediate water circulation and abrupt climate events such as the Younger Dryas (YD) and Heinrich Event 1 (H1) are still poorly constrained. Here, we reconstruct changes in Antarctic Intermediate Water (AAIW) circulation in the subtropical North Atlantic over the past 25 kyr by measuring authigenic neodymium isotope ratios in sediments from two sites in the Florida Straits. Our authigenic Nd isotope records suggest that there was little …
Solar Forcing Of Florida Straits Surface Salinity During The Early Holocene,
2012
Old Dominion University
Solar Forcing Of Florida Straits Surface Salinity During The Early Holocene, Matthew W. Schmidt, William A. Weinlein, Franco Marcantonio, Jean Lynch-Stieglitz
OES Faculty Publications
Previous studies showed that sea surface salinity (SSS) in the Florida Straits as well as Florida Current transport covaried with changes in North Atlantic climate over the past two millennia. However, little is known about earlier Holocene hydrographic variability in the Florida Straits. Here, we combine Mg/Ca-paleothermometry and stable oxygen isotope measurements on the planktonic foraminifera Globigerinoides ruber (white variety) from Florida Straits sediment core KNR166-2 JPC 51 (24° 24.70' N, 83° 13.14' W, 198 m deep) to reconstruct a high-resolution (~25 yr/sample) early to mid Holocene record of sea surface temperature and δ18OSW)(a …
Controls On Dissolved Cobalt In Surface Waters Of The Sargasso Sea: Comparisons With Iron And Aluminum,
2012
Old Dominion University
Controls On Dissolved Cobalt In Surface Waters Of The Sargasso Sea: Comparisons With Iron And Aluminum, R. U. Shelley, Peter N. Sedwick, T. S. Bibby, P. Cabedo-Sanz, T. M. Church, R. J. Johnson, A. I. Macey, C. M. Marsay, E. R. Sholkovitz, S. J. Ussher, P. J. Worsfold, M. C. Lohan
OES Faculty Publications
Dissolved cobalt (dCo), iron (dFe) and aluminum (dAl) were determined in water column samples along a meridional transect (∼31°N to 24°N) south of Bermuda in June 2008. A general north-to-south increase in surface concentrations of dFe (0.3-1.6 nM) and dAl (14-42 nM) was observed, suggesting that aerosol deposition is a significant source of dFe and dAl, whereas no clear trend was observed. for near-surface dCo concentrations. Shipboard aerosol samples indicate fractional solubility values of 8-100% for aerosol Co, which are significantly higher than corresponding estimates of the solubility of aerosol Fe (0.44-45%). Hydrographic observations and analysis of time series rain …
Technical Note: A Trace Gas Climatology Derived From The Atmospheric Chemistry Experiment Fourier Transform Spectrometer (Ace-Fts) Data Set,
2012
Old Dominion University
Technical Note: A Trace Gas Climatology Derived From The Atmospheric Chemistry Experiment Fourier Transform Spectrometer (Ace-Fts) Data Set, A. Jones, K. A. Walker, J. J. Jin, J. R. Taylor, C. D. Boone, P. F. Bernath, S. Brohede, G. L. Manney, S. Mcleod, R. Hughes, W. H. Daffer
Chemistry & Biochemistry Faculty Publications
The Atmospheric Chemistry Experiment-Fourier Transform Spectrometer (ACE-FTS) aboard the Canadian satellite SCISAT (launched in August 2003) was designed to investigate the composition of the upper troposphere, stratosphere, and mesosphere. ACE-FTS utilizes solar occultation to measure temperature and pressure as well as vertical profiles of over thirty chemical species including O3, H2O, CH4, N2O, CO, NO, NO2, N2O5, HNO3, HCl, ClONO2, CCl3F, CCl2F2, and HF. Global coverage for each species is obtained approximately over a three month …
Greenhouse Gas Measurements Over A 144 Km Open Path In The Canary Islands,
2012
Old Dominion University
Greenhouse Gas Measurements Over A 144 Km Open Path In The Canary Islands, J.S. A. Brooke, P. F. Bernath, G. Kirchengast, C. B. Thomas, J. G. Wang, K. A. Tereszchuk, G. González Abad, R. J. Hargreaves, C. A. Beale, J. J. Harrison
Chemistry & Biochemistry Faculty Publications
A new technique for the satellite remote sensing of greenhouse gases in the atmosphere via the absorption of short-wave infrared laser signals transmitted between counter-rotating satellites in low Earth orbit has recently been proposed; this would enable the acquisition of a long-term, stable, global set of altitude-resolved concentration measurements. We present the first ground-based experimental demonstration of this new infrared-laser occultation method, in which the atmospheric absorption of CO2 near 2.1µm was measured over a ∼144km path length between two peaks in the Canary Islands (at an altitude of ∼2.4 km), using relatively low power diode lasers (∼4 to …
Assessing Satellite-Based Rainfall Estimates In Semiarid Watersheds Using The Usda-Ars Walnut Gulch Gauge Network And Trmm Pr,
2012
Chapman University
Assessing Satellite-Based Rainfall Estimates In Semiarid Watersheds Using The Usda-Ars Walnut Gulch Gauge Network And Trmm Pr, Eyal Amitai, Carl L. Unkrich, David C. Goodrich, Emad Habib, Bryson Thill
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
The rain gauge network associated with the Walnut Gulch Experimental Watershed (WGEW) in southeastern Arizona provides a unique opportunity for direct comparisons of in situ measurements and satellite-based instantaneous rain rate estimates like those from the Tropical Rainfall Measuring Mission (TRMM) precipitation radar (PR). The WGEW network is the densest rain gauge network in the PR coverage area for watersheds greater than 10 km(2). It consists of 88 weighing rain gauges within a 149-km(2) area. On average, approximately 10 gauges can be found in each PR field of view (similar to 5-km diameter). All gauges are very well synchronized with …
Photoproduction Of Ammonium In The Southeastern Beaufort Sea And Its Biogeochemical Implications,
2012
University of South Carolina - Columbia
Photoproduction Of Ammonium In The Southeastern Beaufort Sea And Its Biogeochemical Implications, H. Xie, S. Belanger, G. Song, Ronald Benner, A. Taalba, M. Blais, J. É. Tremblay, M. Babin
Faculty Publications
Photochemistry of dissolved organic matter (DOM) plays an important role in marine biogeochemical cycles, including the regeneration of inorganic nutrients. DOM photochemistry affects nitrogen cycling by converting bio-refractory dissolved organic nitrogen to labile inorganic nitrogen, mainly ammonium (NH4+).During the August 2009 Mackenzie Light and Carbon (MALINA) Program, the absorbed photon-based efficiency spectra of NH4+ photoproduction (i.e. photoammonification) were determined using water samples from the SE Beaufort Sea, including the Mackenzie River estuary, shelf, and Canada Basin. The photoammonification efficiency decreased with increasing wavelength across the ultraviolet and visible regimes and was higher in offshore waters …
