Oceanography and Atmospheric Sciences and Meteorology Commons^™

Ancient Convergent Losses Of Paraoxonase 1 Yield Potential Risks For Modern Marine Mammals, Wynn K. Meyer, Jerrica Jamison, Rebecca Richter, Stacy E. Woods, Raghavendran Partha, Amanda Kowalczyk, Charles Kronk, Maria Chikina, Robert K. Bonde, Daniel E. Crocker, Joseph Gaspard, Janet M. Lanyon, Judit Marsillach, Clement E. Furlong, Nathan L. Clark

United States Geological Survey: Staff Publications

Mammals diversified by colonizing drastically different environments, with each transition yielding numerous molecular changes, including losses of protein function. Though not initially deleterious, these losses could subsequently carry deleterious pleiotropic consequences. We have used phylogenetic methods to identify convergent functional losses across independent marine mammal lineages. In one extreme case, Paraoxonase 1 (PON1) accrued lesions in all marine lineages, while remaining intact in all terrestrial mammals. These lesions coincide with PON1 enzymatic activity loss in marine species’ blood plasma. This convergent loss is likely explained by parallel shifts in marine ancestors’ lipid metabolism and/or bloodstream oxidative environment affecting PON1’s role …

A Comparison Of Benthic Habitats And Faunas Between The Miami Terrace (Proposed Calypso Pipeline Site) And The Pourtales Terrace (Coral Habitat Of Particular Concern), Laura Dell

HCNSO Student Theses and Dissertations

Quantitative photographs of benthic communities at two northern Miami Terrace sites, originally investigated as part of an environmental impact survey in advance of the proposed Calypso pipeline, and two Pourtalès Terrace sites, investigated as part of an exploration of deep-sea coral and sponge ecosystems (DSCEs) within the Pourtalès Terrace Deep-water Coral Habitat Area of Particular Concern (CHAPC), were reanalyzed and compared for similarities and differences. Both terraces are part of an elongated lithified platform that parallels the southeastern Florida coast at depths averaging between 250 and 450 m. Although both sites have similar geological origins and lie under the Florida …

Next Generation Sequencing Methods For Coastal Zone Water Quality Monitoring, Catherine Iskrenko

HCNSO Student Capstones

When analyzing the water quality of the coastal zone, culture-based techniques have been utilized most often to identify Fecal Indicator Bacteria in samples. Since the advent of the Sanger Method for DNA sequencing, other techniques have arisen that provide significantly more information on the microorganisms in sample, but they are still not the mainstream for water quality analysis. This capstone reviews and compares culture-based techniques, DNA sequencing, RNA sequencing, qPCR for biomarker, and 16S rDNA sequencing to highlight their merits and shortcomings for analyzing environmental water samples. The technique presented that provides the broadest range of information (including the identification …

Internal Parasites Of The Two Subspecies Of The West Indian Manatee Trichechus Manatus, Heidi Wyrosdick, Alycia Chapman, Antonio A. Mignucci-Giannoni, Carla I. Rivera-Pérez, Robert K. Bonde

United States Geological Survey: Staff Publications

The West Indian manatee Trichechus manatus is divided into 2 subspecies: the Antillean (T. m. manatus) and Florida (T. m. latirostris) manatees. This study reports sample prevalence of manatee parasites from populations of these 2 subspecies in different geographical locations. Although necropsy is a valuable diagnostic tool for parasite infections, the need for antemortem diagnostic techniques is important. Fecal samples collected during necropsies of Antillean manatees (n = 3) in Puerto Rico and Florida manatees (n = 10) in Crystal River, Florida, as well as from live-captured Florida manatees (n = 11) were evaluated using centrifugal …

Meta-Analytic Summary Of Parasites And Diseases Of Elasmobranchs Found In Florida Waters, Alexis S. Modzelesky

HCNSO Student Capstones

Elasmobranchs have conservational and commercial importance. There is a need for a more complete understanding of their health, due to their ability to shape trophic webs and their money-making potential with fishers and ecotourists. Sharks have been known to influence the strength of food webs, including reef ecosystems where many fish species are harvested for food. The investigation of pathogenic agents and diseases in elasmobranchs has been biased to favor those natural enemies that inhabit the digestive system and epidermal surfaces. Certain groups of parasites such as cestodes, copepods, and monogeneans, were most often recorded in this study. The bacterial …

Fourier Transform Spectroscopy Of The C³Δ-X³Δ Transition Of Tio In Support Of Exoplanet Spectroscopy, James N. Hodges, Peter Bernath

Chemistry & Biochemistry Faculty Publications

Recent limitations in the TiO line list used in cross-correlation detection schemes have made the detection and quantification of TiO in exoplanetary atmospheres challenging. The quality of the line list appears to degrade at wavelengths shorter than 630 nm. The C³Δ-X³Δ electronic transition has strong rovibronic bands near 500 nm. In an effort to improve the line list, a spectrum of TiO in a furnace at 1950 K is analyzed, and the assigned lines of the C³Δ-X³Δ transition are fit with the N² Hamiltonian in the molecular spectrum fitting software, _{PGOPHER …}

Enhanced Acidity Of Acetic And Pyruvic Acids On The Surface Of Water, Alexis J. Eugene, Elizabeth A. Pillar, Agustín J. Colussi, Marcelo I. Guzman

Chemistry Faculty Publications

Understanding the acid–base behavior of carboxylic acids on aqueous interfaces is a fundamental issue in nature. Surface processes involving carboxylic acids such as acetic and pyruvic acids play roles in (1) the transport of nutrients through cell membranes, (2) the cycling of metabolites relevant to the origin of life, and (3) the photooxidative processing of biogenic and anthropogenic emissions in aerosols and atmospheric waters. Here, we report that 50% of gaseous acetic acid and pyruvic acid molecules transfer a proton to the surface of water at pH 2.8 and 1.8 units lower than their respective acidity constants pK_{a …}

Natural And Managed Watersheds Show Similar Responses To Recent Climate Change, Darren L. Ficklin, John T. Abatzoglou, Scott M. Robeson, Sarah E. Null, Jason H. Knouft

Watershed Sciences Faculty Publications

Changes in climate are driving an intensification of the hydrologic cycle and leading to alterations of natural streamflow regimes. Human disturbances such as dams, land-cover change, and water diversions are thought to obscure climate signals in hydrologic systems. As a result, most studies of changing hydroclimatic conditions are limited to areas with natural streamflow. Here, we compare trends in observed streamflow from natural and human-modified watersheds in the United States and Canada for the 1981–2015 water years to evaluate whether comparable responses to climate change are present in both systems. We find that patterns and magnitudes of trends in median …

Weather And Climate Summary And Forecast: August 2018 Report, Gregory V. Jones

Linfield University Wine Studies Reports

This report provides a summary of the weather and climate forecast for August 2018. It includes forecast information specific to the Pacific Northwest and the western United States, as well as forecast information for other portions of the United States and abroad.

Bubble Stream Production By Belugas (Delphinapterus Leucas), Megan Slack

Theses

Bubble stream production in belugas has been poorly characterized and its function is not well understood. I examined behavioral states when producing bubble streams (“bubbling”), and when bubbling calls, to determine whether bubbling was significantly associated with a particular call category or behavioral state. Using 19 hours of video and audio recordings collected over a two-day period, I quantified bubble streams of a 4-month old calf and an unrelated adult female housed together. Based on the overall activity budgets and pool of vocalizations for both animals, I calculated the expected counts of bubble streams with and without vocalizations, assuming that …

Serum Proteins In Healthy And Diseased Florida Manatees (Trichechus Manatus Latirostris), J.W. Harvey, K.E. Harr, D. Murphy, M.T. Walsh, M. De Wit, R.K. Bonde

United States Geological Survey: Staff Publications

A major goal of this study was to determine whether serum protein fractions of healthy Florida manatees differ with age, sex, or living environments (wild versus housed). A second goal was to determine which serum protein fractions vary in diseased versus healthy manatees. Serum protein fractions were determined using agarose gel electrophoresis. Healthy adults had slightly higher total serum protein and total globulin concentrations than younger animals. This largely resulted from an increase in gamma globulins with age. Total serum protein, albumin, alpha-1 globulin, beta globulin, and total globulin concentrations were slightly higher in housed manatees compared to wild manatees, …

Estimating Watershed Residence Times In Artificially-Drained Landscapes And Relation To Nutrient Concentrations, Emma Beck, Lisa Welp, Alexandra L. Meyer

The Summer Undergraduate Research Fellowship (SURF) Symposium

Nutrient runoff from agricultural lands feeds harmful algae blooms that create a variety of problems in freshwater ecosystems. In order to reduce the effects of this nutrient runoff, Best Management Practices (BMPs) are being put in place in agricultural lands. Most of these BMPs focus on slowing down the flow of water through the watershed to give nutrient concentrations time to deplete before the water flows to the stream or river. However, the effectiveness of these BMPs are highly unknown and the process of monitoring nutrient runoff is often complex and costly. The data in this study consists of 7 …

Geotraces And Beyond: Studies Of Trace Elements In Coastal And Open Ocean Waters With An Emphasis On The Effects Of Oxygen Depletion And Hydrothermal Plumes, Peng Ho

Dissertations

We investigated various dissolved trace element (dTE) distributions in two distinct areas: the coastal northern Gulf of Mexico and the eastern tropical Pacific Ocean.

A multi-year (2007‒2011) chemical time series of eight stations in the western Mississippi Sound (MS) and northwestern Mississippi Bight (MB) was undertaken to examine the factors affecting chemical distributions in this dynamic region. Key findings include the frequent development of bottom water hypoxia in MB during late spring-summer, the likely contribution of submarine groundwater discharge (SGD) to the material flows, and observation of effects of episodic events including tropical storms and the opening of the Bonnet …

Evaluating Climate Change Policy Through The Endangered Species Act, Richie Donahou

Graduate Theses and Dissertations

This research sets out to address a growing knowledge gap of climate change science in regards to the state of Arkansas. Within the coming chapters, the goal of this research is to examine climate data and to identify if any evidence of climate change can be detected and what are the policies in place to adapt to these potential changes. Furthermore, the scope of this research will be narrowed to a few counties over the southwest Arkansas, and a specific endangered species, the Leopard Darter. Upon examination of previous environmental and ecological climate change related research it became clear that …

Antipredatory Escape Behaviors Of Two Benthic Ctenophores In South Florida, Peter W. Glynn, Brian Coffman, Jeongran Vanderwoude, Nicolas Martinez, Joshua H. Dominguez, Julie M. Gross, Dorothy-Ellen A. Renegar

Marine & Environmental Sciences Faculty Articles

Benthic ctenophores, members of the family Coeloplanidae (Order Platyctenida, Phylum Ctenophora) are more widespread and abundant in tropical and subtropical marine environments than formerly recognized. Coeloplanid ctenophores are members of the most speciose family of benthic ctenophores, with 33 recognized species of Coeloplana and one species of the genus Vallicula (Mills 1998). The majority of coeloplanids are ectosymbionts of algae and diverse benthic invertebrates (Matsumoto 1999, Alamaru et al. 2015). Hundreds to thousands of individuals can occupy preferred habitats in < 1 m² of substrate patches. Galt (1998) noted Vallicula multiformis inhabiting algae in Hawaii at population densities as high as 10,000 …

Estimating Watershed Mercury Contribution To Lake Fort Smith State Park, Arkansas, Usa, William Miles Harmon

Graduate Theses and Dissertations

Mercury contamination associated with human activities poses global human health and environmental risks. A fish-consumption advisory has been in effect at Lake Fort Smith in central west Arkansas for more than a decade due to observed methylmercury concentrations in fish tissue. Lake Fort Smith is an important municipal drinking water supply and recreational resource. Water samples from the majority contributing tributary stream, Frog Bayou creek, were collected periodically, under differing hydrologic conditions in order to quantify the allochthonous mercury load delivered to the lake. Temperature, specific conductance, and turbidity data were collected and used to estimate dissolved organic carbon, methylmercury …

The Energy Yield Of Global Crops 1961-2016, Quinn Montana

Graduate Theses and Dissertations

It is often suggested that world food production must increase by 70%-100% or more by the year 2050 if we are to feed the anticipated world population at that time. To evaluate this claim, global crop production from 1961 to 2016 was inventoried using publicly available data from the United Nations Food and Agriculture Organization (FAO). To determine the adequacy of global crop output for humanity, annual global food crop production data (T y-1) were converted to energy yield in kilojoules (KJ y-1). These data were then compared to the annual metabolic energy requirement of the global human population. The …

A Quantitative Analysis Of Calcareous Nannofossils Across A Late Oligocene Paleolatitude Transect Of The North Atlantic Ocean, William Barrett Clark

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

Samples from ODP Sites 926, 628, 563, U1406, 647, and 918, were analyzed quantitatively across a paleolatitude transect of the North Atlantic Ocean to determine the paleolatitudinal distribution of calcareous nannofossils in the Late Oligocene and the effects of that distribution on biostratigraphic resolution. Detrended Correspondence Analysis (DCA), a Temperature index (TI), and the Shannon Diversity Index (H), were used to examine the paleoenvironmental gradients which exerted the most control over the distribution of species and their abundances. The temperature index correlates significantly to the first axis of the DCA, suggesting that thermal controls were the most important factor in …

Assessment Of Indoor & Outdoor Black Carbon Emissions Rural Areas Of Indo-Gangetic Plain: Seasonal Characteristics, Source Apportionment And Radiative Forcing, Mohammad Arif, Rajesh Kumar, Ramesh Kumar, Eric Zusman, Ramesh Singh, Akhilesh Gupta

Mathematics, Physics, and Computer Science Faculty Articles and Research

Black Carbon (BC) has been widely recognized as the second largest source of territorial and global climate change as well as a threat to human health. There has been serious concern of BC emission and its impact in Indo-Gangetic Plains (IGP) due to the use of biomass and fossil fuels for cooking, transportation and industrial activities. An attempt has been made to study indoor (Liquefied Petroleum Gas- LPG & Traditional cookstoves users households) and outdoor concentrations; seasonal characteristics; radiative forcing and source of apportionment of BC in three districts (Sitapur, Patna and Murshidabad) of IGP during January to December 2016. …

Assessment Of Snow Atmosphere Forcing During Central Idaho Atmospheric Rivers, William Rudisill

Boise State University Theses and Dissertations

Atmospheric Rivers (AR) are globally occuring weather features and the primary mechanism through which water vapor moves from the tropics and subtropics towards the mid-latitudes, doing so at rates comparable to the world’s largest terrestrial rivers. AR that encounter mountains often cause extreme precipitation in the form of rain and snow, high winds, and flooding in many watersheds. They account for as much as 20-30% of cool season precipitation in the central Idaho Mountains. In the Northern Hemisphere, seasonal snow cover during Winter and Spring months is the most variable land surface component in space and time, and acts on …