Quantifying Contributions Of Climate, Geography, And Gene Flow To Divergence: A Case Study For Three North American Pines,
2022
Virginia Commonwealth University
Quantifying Contributions Of Climate, Geography, And Gene Flow To Divergence: A Case Study For Three North American Pines, Constance E. Bolte
Theses and Dissertations
Long-lived species of trees, especially conifers, often display weak patterns of reproductive isolation, but clear patterns of local adaptation and phenotypic divergence. Discovering the evolutionary history of these patterns is paramount to a generalized understanding of speciation and the processes that confer population persistence versus those that compromise adaptive potential under rapidly changing environments. Forest trees have long generation times and low migratory potential making them especially vulnerable to population fragmentation and reductions of genetic diversity due to insufficient tracking of niche optima and adaptational lags. Within clades of the genus Pinus, evolutionary histories appear to be riddled with hybridization …
ผลของสารสกัดสมุนไพรที่มีเห็ดกระถินพิมาน Phellinus Linteus เป็นองค์ประกอบต่อการมีชีวิตของเซลล์ วัฏจักรเซลล์ อะพอพโทซิส และการแสดงออกของยีนในเซลล์มะเร็งลำไส้ใหญ่และเซลล์มะเร็งต่อมลูกหมาก,
2022
คณะวิทยาศาสตร์
ผลของสารสกัดสมุนไพรที่มีเห็ดกระถินพิมาน Phellinus Linteus เป็นองค์ประกอบต่อการมีชีวิตของเซลล์ วัฏจักรเซลล์ อะพอพโทซิส และการแสดงออกของยีนในเซลล์มะเร็งลำไส้ใหญ่และเซลล์มะเร็งต่อมลูกหมาก, ประกายทิพย์ สมจิตต์
Chulalongkorn University Theses and Dissertations (Chula ETD)
มะเร็งลำไส้ใหญ่เป็นมะเร็งที่มีอัตราการเกิดและเสียชีวิตเป็นอันดับต้น ๆ ในทุกกลุ่มอายุ และมะเร็งต่อมลูกหมากเป็นมะเร็งที่มีอัตราการเกิดและเสียชีวิตเป็นอันดับสองในเพศชาย โดยการศึกษาในปัจจุบันพบว่าเห็ดกระถินพิมาน (Phellinus linteus) และสมุนไพรอื่นๆ บางชนิดมีฤทธิ์ป้องกันการเกิดมะเร็ง การศึกษานี้จึงมีวัตถุประสงค์เพื่อตรวจสอบฤทธิ์และกลไกการยับยั้งการมีชีวิตของสารสกัดที่มีเห็ดกระถินพิมานเป็นองค์ประกอบร่วมกับสมุนไพรอื่น ๆ (สูตรตำรับ) และสารสกัดเห็ดกระถินพิมานในเซลล์มะเร็งลำไส้ใหญ่ HCT116 SW620 และ HT-29 และเซลล์มะเร็งต่อมลูกหมาก PC-3 ผลทดสอบการยับยั้งการมีชีวิตของเซลล์ด้วยเทคนิค MTT assay แสดงให้เห็นว่าสารสกัดสูตรตำรับสามารถยับยั้งการมีชีวิตของเซลล์มะเร็งที่ศึกษาได้ 50% (IC50) ที่ความเข้มข้นน้อยกว่าสารสกัดที่มีเห็ดกระถินพิมานเพียงอย่างเดียวอย่างมีนัยสำคัญทางสถิติ โดยกลไกการยับยั้งการมีชีวิตของเซลล์มะเร็งลำไส้ใหญ่และเซลล์มะเร็งต่อมลูกหมากของสารสกัดสูตรตำรับได้ศึกษาการควบคุมผ่านวัฏจักรเซลล์และกระบวนการอะพอพโทซิสโดยใช้เทคนิค PI assay และเทคนิค Annexin V apoptosis assay ตามลำดับ ผลการศึกษาแสดงให้เห็นว่าสารสกัดสูตรตำรับเพิ่มจำนวนประชากรสะสมในระยะ G0/G1 และชักนำการตายแบบ necrosis ในเซลล์มะเร็งต่อมลูกหมาก และเพิ่มจำนวนประชากรเซลล์มะเร็งลำไส้ใหญ่ชนิด HCT116 และ HT-29 ในระยะ G2 และ SW620 ในระยะ S และชักนำการตายแบบอะพอพโทซิสในเซลล์มะเร็งลำไส้ใหญ่ ฉะนั้นฤทธิ์ของสารสกัดสูตรตำรับในการควบคุมวัฏจักรเซลล์มะเร็งต่อมลูกหมากและเซลล์มะเร็งลำไส้ใหญ่ชนิด HT-29 เกี่ยวข้องกับการลดการแสดงออกของยีน KRAS อย่างมีนัยสำคัญทางสถิติ นอกจากนี้การตายแบบอะพอพโทซิสของเซลล์มะเร็งต่อมลูกหมากและเซลล์มะเร็งลำไส้ใหญ่ชนิด HCT116 และ HT-29 เกี่ยวข้องกับการเพิ่มและลดการแสดงออกของยีน IFNGR1 อย่างมีนัยสำคัญทางสถิติ ดังนั้นการศึกษานี้สามารถชี้ให้เห็นถึงความสามารถของเห็ดกระถินพิมานร่วมกับสมุนไพรอื่นๆ ในการควบคุมการตอบสนองในเซลล์มะเร็งลำไส้ใหญ่และเซลล์มะเร็งต่อมลูกหมากผ่านการควบคุมวัฏจักรเซลล์ อะพอพโทซิส และการแสดงออกของยีน
Course Portfolio For Bioc934: Genome Dynamics And Gene Expression,
2022
University of Nebraska-Lincoln
Course Portfolio For Bioc934: Genome Dynamics And Gene Expression, Nicole R. Buan
UNL Faculty Course Portfolios
A graduate degree in Biochemistry or any molecular life science field requires a strong foundation in molecular biology. BIOC934 Genome Dynamics and Gene Expression is a course designed to challenge graduate students whose research interests lie in the areas of biochemistry, molecular biology, synthetic biology, bioinformatics, and systems biology of prokaryote and eukaryote systems. Graduate students in these disciplines require a rigorous and thorough examination of core concepts in addition to practice applying theory to new observations while traversing unfamiliar disciplinary terrain. This portfolio describes the design of BIOC934, its implementation, and observed outcomes to identify strengths of the course …
Phylogenetic Origins And Age-Based Proportions Of Malacho (Elops Smithi) Relative To Ladyfish (Elops Saurus): Species On The Move In The Western Gulf Of Mexico,
2022
Texas Parks and Wildlife Department
Phylogenetic Origins And Age-Based Proportions Of Malacho (Elops Smithi) Relative To Ladyfish (Elops Saurus): Species On The Move In The Western Gulf Of Mexico, Damon Williford, Nicolette S. Beeken, Joel Anderson, Polly Hajovsky, Roberta Weixelman
Gulf and Caribbean Research
Two species of ladyfish occur in the Gulf of Mexico (GOM), Elops saurus and Elops smithi, that are morphologically indistinguishable except for vertebral counts but can also be identified by mitochondrial DNA haplotypes. Here we expand on previous work, most of which has occurred in Florida, and examine the demography, phylogenetics, geographic distribution, and age—structure of ladyfishes in Texas estuaries. Fishery—independent gill net data demonstrated that ladyfishes increase in abundance from north to south along the Texas coast. The abundance of ladyfishes also increased in Texas waters from 1982–2021, which coincides with recent trends of warmer winters. Genetic data …
Identification Of A Novel Protein Interaction That Elucidates The Mechanism Of Idiopathic Recurrent Miscarriages In Women With Nlrp2 Mutations,
2022
Missouri State University
Identification Of A Novel Protein Interaction That Elucidates The Mechanism Of Idiopathic Recurrent Miscarriages In Women With Nlrp2 Mutations, Nayeon Son
Graduate Theses/Dissertations
The protein NOD-Like receptor pyrin domain containing 2 (NLRP2) is one member of a larger family of protein receptors that plays an important role in our innate immune system. In humans, the NLR family consists of 22 proteins. However, only about a half of NLRs’ functions are known, but many are pro-inflammatory, causing inflammation. NLRP2 has been identified to be a maternal effect gene regulating early embryo development in idiopathic recurrent miscarriages. In previous studies, mutations in the NLRP2 gene resulted in genetic maternal imprinting disorders due to NLRP2 regulating DNA methylation. However, the exact mechanisms involved in recurrent miscarriages …
Dna Methylation Patterns Of Line-1 Elements Specific To Hc21p In Cancer Cells,
2022
Loyola University Chicago
Dna Methylation Patterns Of Line-1 Elements Specific To Hc21p In Cancer Cells, Dametria Jetters
Master's Theses
Long Interspersed Nuclear Elements (LINEs) are retrotransposons. They function by making a cDNA copy, reverse-transcribing it into DNA and reinserting itself back into the genome; thereby, increasing its copy number. Sequencing of the human genome revealed that LINEs (L1) are underrepresented on the short arm of human chromosome 21 (HC21), but it is enriched in full-length copies. A number of previous studies have investigated the DNA methylation patterns of L1s in cancer cells, but these studies are typically done in euchromatic regions. The heterochromatic short arm of HC21 is primarily composed of heterochromatin. However these regions can be targeted for …
Investigating The Genetic Diversity Of Immune Genes In Non-Native Populations Of American Bullfrogs (Rana Catesbeiana),
2022
Humboldt State University
Investigating The Genetic Diversity Of Immune Genes In Non-Native Populations Of American Bullfrogs (Rana Catesbeiana), Luisa Nereyda Segovia
Cal Poly Humboldt theses and projects
The American Bullfrog (Rana catesbeiana) is a highly invasive species that has successfully colonized habitats around the world. The genetic variability of immune genes within invasive populations, like that of bullfrogs, may contribute to how resistant a population is to pathogens. The objective of this project was to characterize the genetic diversity of an immune gene in invasive bullfrog populations in California to better understand how persistent these populations might be over time. To characterize immune gene variability, I isolated exon 2 of the Major Histocompatibility Complex (MHC) Class II Beta chain gene and a neutral mitochondrial marker, …
Degradation And Nitrogen Cycling In The Context Of Biodiversity-Ecosystem Function Relationships In The Inquiline Bacterial Community Of Darlingtonia Californica,
2022
Humboldt State University
Degradation And Nitrogen Cycling In The Context Of Biodiversity-Ecosystem Function Relationships In The Inquiline Bacterial Community Of Darlingtonia Californica, Megan Teigen
Cal Poly Humboldt theses and projects
Biodiversity-ecosystem function (BEF) research aims to explain how species and their environments interact with each other. Microbial communities engage in vital biogeochemical pathways in a variety of natural ecosystems, and yet there are large knowledge gaps about the specific metabolic pathways in which they are involved. Degradation specifically contributes to nitrogen cycling globally through the breakdown of large organic nitrogen compounds into small inorganic nitrogen that is necessary for the survival of many other organisms. In this study, I focused on the degradative function of the inquiline microbial communities found within the carnivorous pitcher plant, Darlingtonia californica. Darlingtonia grows in …
Identifying The Human Homologs Of Yeast Rab Proteins Ypt10 & Ypt11 And A Global-Scale Louse Endosymbiont Genome Variation,
2022
Virginia Commonwealth University
Identifying The Human Homologs Of Yeast Rab Proteins Ypt10 & Ypt11 And A Global-Scale Louse Endosymbiont Genome Variation, Nathaniel P. Smith
Theses and Dissertations
Amyotrophic lateral sclerosis (ALS) is a late-onset fatal neurodegenerative disease that causes loss of upper and/or lower motor neurons, and currently has no treatment or cure available. Over 90% of cases occur spontaneously with unknown causes, highlighting the complexity of the disease, and only 10% of cases are linked to heritable genetic mutations. Numerous ALS-linked genes are conserved through evolution, and model organisms may therefore provide opportunities to understand disease pathology at a molecular or cellular level, proving instrumental in identifying therapeutic targets. ALS subtype 8 (ALS8) is caused by an autosomal dominant P56S mutation in the VAPB gene that …
Examination Of Common And Rare Variant Genetic Architecture Of Psychiatric Disorders,
2022
Virginia Commonwealth University
Examination Of Common And Rare Variant Genetic Architecture Of Psychiatric Disorders, Mohammad Ahangari
Theses and Dissertations
Psychiatric disorders are often heterogenous in their manifestation and genome-wide association studies have identified many common risk variants involved in their polygenic architectures with varying degrees of pleiotropy. In recent years, large-scale biobanks have also begun sequencing the genome of their participants to elucidate the role of rare risk variation in the genetic architecture of complex phenotypes, including psychiatric traits. This dissertation sought to better understand the role of both common and rare risk variation in the genetic architecture of psychiatric disorders with a particular focus on schizophrenia and alcohol problems. In the first three analyses, we focused on characterizing …
Applying Conservation Genomic Techniques To Guide Management Of The Reticulated Flatwoods Salamander (Ambystoma Bishopi),
2022
Georgia Southern University
Applying Conservation Genomic Techniques To Guide Management Of The Reticulated Flatwoods Salamander (Ambystoma Bishopi), Miranda Gaupp
College of Graduate Studies: Theses & Dissertations
The Reticulated flatwoods salamander (Ambystoma bishopi) is a federally endangered amphibian endemic to the longleaf-pine ecosystem of the southeastern U.S. This study used analyses of single-nucleotide polymorphism (SNP) data, collected from 2,255 unique individuals across 5 breeding seasons, spread across the known extant range of A. bishopi, to characterize the genetic diversity and demographics of populations, genetic relationships among populations, and patterns and spatial extents of gene flow, and to evaluate potential effects of management on A. bishopi’s resiliency. Population structure was strongly hierarchical, with individual breeding ponds (n = 38) acting as semi-connected subpopulations …
Population Genomics Of Redbreast Sunfish (Lepomis Auritus): Exploring Gene Flow And Local Adaptation In A Widely Distributed Freshwater Fish,
2022
Georgia Southern University
Population Genomics Of Redbreast Sunfish (Lepomis Auritus): Exploring Gene Flow And Local Adaptation In A Widely Distributed Freshwater Fish, Garret J. Strickland
College of Graduate Studies: Theses & Dissertations
Little information is available concerning the distribution of genetic diversity in non-salmonid, non-imperiled, freshwater fish. In order to fill in this knowledge gap, I conducted a population genomics survey in Redbreast Sunfish (Lepomis auritus; RBS), a widespread, generalist species distributed along the Atlantic slope rivers of eastern North America. I sampled four basins (ACF, Savannah, Roanoke, and James) at eight sites each with a factorial experimental design. Sites were distributed among coastal plain, Piedmont, or mountain ecoregions in order to capture the greatest range of environmental states experienced by RBS, with the intention of finding evidence for local adaptation to …
Screening Ocean Samples From Georgia For The Presence Of Msx And Dermo Using Pcr And Qpcr Methods,
2022
University of New Hampshire
Screening Ocean Samples From Georgia For The Presence Of Msx And Dermo Using Pcr And Qpcr Methods, Olivia Michelle Williams
Honors Theses and Capstones
This Senior Thesis project aimed to be able to screen samples that came in from a PhD student in Georgia for the presence of two oyster diseases, MSX and Dermo. This study was done using PCR followed by visualizing on E-gels for initial presence of disease. These were then followed by qPCR and visualization on Criterion gels. These Criterion gels were able to be analyzed in order to calculate the pg/uL of MSX and Dermo in the original ocean samples. Since the samples were sent in over the course of February-August ‘21 the presence over time was also able to …
Cloning Of Root-Specific Promoters In Helianthus Annuus And Populus Trichocarpa,
2022
Eastern Illinois University
Cloning Of Root-Specific Promoters In Helianthus Annuus And Populus Trichocarpa, Jacob Murphy
Masters Theses
Tissue-specific promoters are a valuable tool in plant biotechnology because they allow for precise spatial control of transgene expression. To identify root-specific promoters in sunflower (Helianthus annuus), sunflower RNA sequence (RNA-seq) data were screened in silico by Pavlidis Template Matching (PTM) with a root-specific template. Eight root-specific genes were identified in sunflower. The 2.5kbp promoter regions of six of these root-specific sunflower genes (HaTOR1L3, HaGOXL3A, HaGOXL3B, HaAPA1, HaPOE1, and HaMOP10) were successfully cloned as well as the 3kbp promoter regions of four root-specific genes previously identified in poplar (Populus trichocarpa …
An Analysis Of The Spatial Genetic Structure Of A Hybrid Zone Between Two Species Of Killifish, Fundulus Heteroclitus And F. Grandis,
2022
University of North Florida
An Analysis Of The Spatial Genetic Structure Of A Hybrid Zone Between Two Species Of Killifish, Fundulus Heteroclitus And F. Grandis, Andrew Lee Hardy
UNF Graduate Theses and Dissertations
Hybridization offers unique insight into the evolutionary process of speciation and the forces that maintain barriers to reproduction. In northeast Florida, a hybrid zone between two species of killifish, Fundulus heteroclitus and F. grandis, has been identified near Flagler Beach, FL, although the exact boundaries of the hybrid zone remain unknown (Gonzalez et al. 2009). This study aims to determine the fine-scale spatial genetic patterns of the hybrid zone and test the hypothesis that species ranges are influenced by changes in dominant vegetation. Results from an ADMIXTURE analysis and FST data indicated the boundary of the area of …
The Landscape Of Accessible Chromatin In Quiescent Cardiac Fibroblasts And Cardiac Fibroblasts Activated After Myocardial Infarction,
2022
Old Dominion University
The Landscape Of Accessible Chromatin In Quiescent Cardiac Fibroblasts And Cardiac Fibroblasts Activated After Myocardial Infarction, Chaoyang Yi, Jiangwen Sun, Qianglin Liu, Sanjeeva Dodlapati, Hao Ming, Leshan Wang, Yuxia Li, Rui Li, Zongliang Jiang, Joseph Francis, Xing Fu
Computer Science Faculty Publications
After myocardial infarction, the massive death of cardiomyocytes leads to cardiac fibroblast proliferation and myofibroblast differentiation, which contributes to the extracellular matrix remodelling of the infarcted myocardium. We recently found that myofibroblasts further differentiate into matrifibrocytes, a newly identified cardiac fibroblast differentiation state. Cardiac fibroblasts of different states have distinct gene expression profiles closely related to their functions. However, the mechanism responsible for the gene expression changes during these activation and differentiation events is still not clear. In this study, the gene expression profiling and genome-wide accessible chromatin mapping of mouse cardiac fibroblasts isolated from the uninjured myocardium and the …
Comparative Transcriptomic Analysis Of Cancer Testis Genes In Ovarian Cancer,
2022
Michigan Technological University
Comparative Transcriptomic Analysis Of Cancer Testis Genes In Ovarian Cancer, Zayne Knuth
Dissertations, Master's Theses and Master's Reports
Cancer testis genes are common targets for the development of immunotherapy for cancer treatment. Ovarian cancer is one of the leading causes of death in women cancer patients. Cancer testis genes play a role in tumorigenesis, but it is not clear how these genes are activated. This study utilized differential expression analysis between The Cancer Genome Atlas (TCGA) ovarian cancer data, Genotype-Tissue Expression (GTEx) non-cancerous ovary and testis data, and cell line data to identify a list of cancer testis genes that have a novel expression profile. To identify ovarian cancer testis genes, we obtained normal ovary tissue data and …
Characterizing Drought Adaptations, Phenotypic Plasticity, And Fixed Gene Expression Patterns Within Quercus,
2022
Michigan Technological University
Characterizing Drought Adaptations, Phenotypic Plasticity, And Fixed Gene Expression Patterns Within Quercus, James K. Rauschendorfer
Dissertations, Master's Theses and Master's Reports
This dissertation was written on topics related to the genus Quercus with a primary focus on Quercus ellipsoidalis (northern pin oak) and Quercus rubra (northern red oak). Within this dissertation are chapters related to the setup of experimental common gardens within the Ford and Kellogg experimental forest, a literature review describing drought adaptations of Quercus sect. Lobatae (red oak group), identification of transcription factors within the Q. robur (English oak) and Q. rubra genomes, a study comparing leaf trait phenotypic plasticity of Q. ellipsoidalis and Q. rubra, and an RNA-seq experiment studying ecological speciation between Q. ellipsoidalis and Q. …
Cpf1-Based Crispr Genome Editing In The Cyanobacterium N. Punctiforme,
2022
University of the Pacific
Cpf1-Based Crispr Genome Editing In The Cyanobacterium N. Punctiforme, Soohan Woo
University of the Pacific Theses and Dissertations
CRISPR systems have been growing in their utility and their application throughout the biological field as researchers continue to grow in their understanding of the relatively novel genome editing technology. However, despite the potential of CRISPR as a genome editing tool, the complexity of applying this technology to a specific organism calls for custom modifications to the system to improve its success rate. In this project, a CRISPR-Cpf1 system that can be effectively employed in the cyanobacterium Nostoc punctiforme was designed, with a focus on the hormogonium development of this species. Multiple plasmids containing the CRISPR system and targeting different …
Immunogenicity And Protective Efficacy Of A Recombinant
Pichinde Viral-Vectored Vaccine Expressing Influenza Virus
Hemagglutinin Antigen In Pigs,
2022
University of Nebraska-Lincoln
Immunogenicity And Protective Efficacy Of A Recombinant Pichinde Viral-Vectored Vaccine Expressing Influenza Virus Hemagglutinin Antigen In Pigs, Sushmita Kumari, Jayeshbhai Chaudhari, Qinfeng Huang, Phillip Gauger, Marcelo Nunes De Almeida, Yuying Liang, Hinh Ly, Hiep Vu
Nebraska Center for Virology: Faculty Publications
Influenza A virus of swine (IAV-S) is an economically important swine pathogen. The IAV-S hemagglutinin (HA) surface protein is the main target for vaccine development. In this study, we evaluated the feasibility of using the recombinant tri-segmented Pichinde virus (rPICV) as a viral vector to deliver HA antigen to protect pigs against IAV-S challenge. Four groups of weaned pigs (T01–T04) were included in the study. T01 was injected with PBS to serve as a non-vaccinated control. T02 was inoculated with rPICV expressing green fluorescence protein (rPICV-GFP). T03 was vaccinated with rPICV expressing the HA antigen of the IAV-S H3N2 strain …
