Organic Chemistry Commons^™

Approaches Towards The Synthesis Of Bradyoxetin, Vanildo Martins Lima Braga

Electronic Theses and Dissertations

Quorum sensing bacteria produce and release chemical signal molecules (like N-acyl homoserine lactones, AHL) that increase in concentration as a function of cell density. The responses cover a large spectrum of process such as the virulence in Staphylococcus aureus, competence for DNA-uptake in Bacillus subtilis and Streptococcus pneumoniae, sporulation in Bacillus subtilis, conjugal plasmid transfer in Enterococcus faecalis, and bacteriocin production in lactic acid bacteria. The collapse of (AHL) signaling system in bacteria represents an attractive therapeutic approach towards the development of new antibiotics. Recently, a new extracellular modulator was isolated from a symbiotic bacterium (Bradyrhizobium japonicum) that nodulates soybean. …

Effluent Organic Nitrogen (Eon): Bioavailability And Photochemical And Salinity-Mediated Release, Deborah A. Bronk, Quinn N. Roberts, Marta P. Sanderson, Elizabeth A. Canuel, Patrick G. Hatcher, Rajaa Mesfioui, Katherine C. Filippino, Margaret R. Mulholland, Nancy G. Love

Chemistry & Biochemistry Faculty Publications

The goal of this study was to investigate three potential ways that the soluble organic nitrogen (N) fraction of wastewater treatment plant (WWTP) effluents, termed effluent organic N (EON), could contribute to coastal eutrophication - direct biological removal, photochemical release of labile compounds, and salinity-mediated release of ammonium (NH₄+). Effluents from two WWTPs were used in the experiments. For the bioassays, EON was added to water from four salinities (∼0 to 30) collected from the James River (VA) in August 2008, and then concentrations of N and phosphorus compounds were measured periodically over 48 h. Bioassay results, based …

Sequence And Structural Analysis Of The Chitinase Insertion Domain Reveals Two Conserved Motifs Involved In Chitin Binding, Hai Li, Lesley H. Greene

Chemistry & Biochemistry Faculty Publications

Background: Chitinases are prevalent in life and are found in species including archaea, bacteria, fungi, plants, and animals. They break down chitin, which is the second most abundant carbohydrate in nature after cellulose. Hence, they are important for maintaining a balance between carbon and nitrogen trapped as insoluble chitin in biomass. Chitinases are classified into two families, 18 and 19 glycoside hydrolases. In addition to a catalytic domain, which is a triosephosphate isomerase barrel, many family 18 chitinases contain another module, i.e., chitinase insertion domain. While numerous studies focus on the biological role of the catalytic domain in chitinase activity, …

Synthesis, Characterization, Electrochemistry And Biological Properties Of Schiff Bases And Their Metal Complexes., Zuraini Kadir

Student Works (2010-2019)

A series of new indole hydrazone Schiff bases and their metal complexes have been synthesized, characterized and evaluated for anti-ulcerogenic activity.The Schiff bases derived from indole-3-acetic acid hydrazide and 2-hydroxyacetophenone and their zinc(II), nickel (II) and copper complexes were synthesized by condensation in ethanol. The IR, 1H and 13C NMR, UV Visible data indicate that the hydrazone ligands are coordinated to zinc metal. Indole hydrazones coordinated to zinc(II), nickel(II) and copper(II) metals as dimer ligands. The IR spectrum of the free ligand indicates that in solid state the ligand remains in the keto form. Recrystallization of ligand and complex 5-methyl-2-hydroxyacetophenone …

Chemical Constituents Of Aglaia Lanuginose. King, Fadzly Adzhar Kamarulzaman

Student Works (2010-2019)

Aglaia is a small genus of trees that belong to the family Meliaceae. They are widely distributed in India, Malay Peninsula and throughout Indomalesia. The chemistry of Aglaia has been extensively investigated and most of the researches done on these plants focused on their effect as insecticides, antifeedant, growth inhibitors, cytotoxicity and others. The dichloromethane extract from the bark of Aglaia lanuginose were studied. The chromatographic separation on both of the extracts gave ten compounds. The compounds isolated were identified as eichlerialactone 102, methyl eichlerianate 103, cabraleone 104, ocotillone 105, 4-hydroxycinnamyl acetate 106, cabralealactone 107, eichlerianic acid 108, shoreic acid …

Synthesis, Characterization And Biological Activities Of Some Indole Derivatives And Their Metal Complexes., Mohamed Mustafa Mohamed Ibrahim

Student Works (2010-2019)

Tryptamine (1H-indole-3-ethyleneamine) Schiff bases were prepared by the condensation reaction of ethanolic solution of tryptamine with: salicylaldehyde (TS), 5 chlorosalicylaldehyde (TCS), 5-nitrosalicylaldehyde (TNS), 3,5-di-tert-butyl-2-hydroxy benzaldehyde (TTET) and the ketones: 2-hydroxyacetophenone (THAP), 5-methyl-2- hydroxyacetophenone (TMeHAP), 5-methoxy-2 hydroxyacetophenone (TOMeHAP), 5- chloro-2-hydroxyacetophenone (TClHAP) and 5-bromo-2 hydroxyacetophenone (TBrHAP). The ligands were coordinated to Zn(II), Cu(II) and Ni(II) by the reaction of metal acetates with the corresponding ligand in a 1 : 2 metal to ligand ratio. The solid products formed were collected, washed with ethanol and recrystallized from a suitable solvent. All the ligands and complexes prepared have been characterized by spectroscopic methods using …

Synthesis, Characterization And Biological Activities Of Three Indole Schiff Bases And Their Copper And Nickel Complexes., Nazzatush Shimar Jamaludin

Student Works (2010-2019)

Three derivatives of indole-3-carboxaldehyde with indole-3-acetic hydrazide and their copper(II) and nickel(II) complexes were synthesized. The Schiff base compounds were varied on the substituent where each compound holds a hydrogen, chlorine and bromine atom on the 5th position of indole-3-carboxaldehyde. The structures of the ligands and their complexes were elucidated by various characterization methods. All compounds were screened for their biological effects on neuroprotective screening (in vitro), acute toxicity test (in vivo), ethanol-induced gastric ulcer (anti-ulcer) and glucose tolerance test (antidiabetic). All compounds except bromine-containing compounds were not dose dependent while compounds with bromine displayed significant results, acting as inhibitory …

Chemical Constituents Of Cryptocarya Densiflora., Nurul Nazneem Wan Othman

Student Works (2010-2019)

The extraction of alkaloids from the Malaysian Cryptocarya densiflora has been carried out in this study. The alkaloids were extracted from the bark and leaves of this species using acid base extraction and the crude alkaloids obtained were subjected to extensive chromatographic techniques such as thin layer and column chromatography. The structural elucidation of the purified alkaloids were performed with the aid of spectroscopic methods i.e. 1H NMR, 13C NMR, 2D NMR, IR, UV and LCMS. Investigation of the alkaloidal content from the bark of Cryptocarya densiflora afforded six alkaloids and their structures were elucidated as laurotetanine 63, isocaryachine 64, …

New Palm Oil Products By Enzymatic Interesterification And Dry Fractionation., Saw Mei Huey

Student Works (2010-2019)

Palm olein is one of the major palm oil products that domestically and industrially used as cooking or frying oil. Palm olein tends to crystallize at low temperature that limits its usage in temperate countries. In spite of various nutritional studies, palm olein is also not well considered as recommended choice due to its higher saturation content. Against these factors, there is a need to reduce its saturation content. In this study, the saturation content in palm olein was reduced through the combination of enzymatic interesterification and dry fractionation. Enzymatic interesterification allows interchanging of acyl groups between and within triacylglycerols …

Synthesis, Characterization And Electrochemical Studies Of Cu(Ii), Fe(Ii), Fe(Iii) And Ni(Ii) Complexes Of Someo-Phenylenediamine Schiff Bases., Abdulaziz Ali Alomari

Student Works (2010-2019)

Four Schiff base ligands, N,N’-1,2-benzene-1,2-diyl-bis(5-chlorosalicylideneimine) (H2L1), N,N’-1,2-benzene-1,2-diyl-bis(4-bromosalicylideneimine) (H2L2), N,N’-1,2- benzene-1,2-diyl-bis(4-hydroxysalicylideneimine) (H2L3), and N,N’-1,2-benzene-1,2-diyl-bis(3-bromo-5-chlorosalicylideneimine) (H2L4) were obtained in good yields from the condensation reaction of o-phenylenediamine with 5-chlorosalicylaldehyde, 5-bromosalicylaldehyde, 4-hydroxysalicylaldehyde and 3-bromo-5-chlorosalicylaldehyde respectively. These Schiff bases formed complexes with copper(II), iron(II) and nickel(II) ions in good yields. The structures of these complexes are mainly square planar, which is confirmed by the crystal structure of nickel(II) complex of bis-N,N’-3-chloro-5-bromosalicylideneamine-,2-diaminobenzene. Attempts to prepare the corresponding iron(III) complexes were unsuccessful. The ligands were characterized by Fourier transform infrared spectroscopy, elemental analysis, 1H-Nuclear magnetic resonance spectroscopy and UV-vis spectroscopy, while the complexes were characterized by …

Supramolecular Self-Assembly Strategies Involving Water Soluble Calixarenes., Irene Ling

Student Works (2010-2019)

Fundamental investigations of host-guest interactions on the supramolecular self-assembly involving water-soluble p-sulfonatocalix[4]arene, with a series of imidazolium-based cations and pyrrolidinium cation with variable alkyl chain lengths, which featured extensively in ionic liquids have been established. Combinatorial studies incorporating multiple components concerning p-sulfonatocalix[4]arene, imidazolium cations or pyrrolidinium cation, phosphonium cations and lanthanide ions have been developed, which yielded diverse solid state motifs with a common structural characteristic that the imidazolium or pyrrolidinium cation resides in the cavity of the calixarene. Shorter terminal alkyl chain of mono-imidazolium molecules, i.e. n-ethyl and n-butyl imidazoliums are confined in the „molecular capsule‟, being encapsulated by …

Oxidation Of Dibenzothiophene To Dibenzothiophene Using Metal Nanoparticles Supported On Silica, Karina Castillo

Open Access Theses & Dissertations

Silica and nanoparticles of Pt, Au, and Ag supported on silica were tested for the ability to oxidize dibenzothiophene (DBT) to sulfone. High performance liquid chromatography was used to study the removal of DBT from solution. In addition, X- ray diffraction, infrared spectroscopy and Raman Spectroscopy were used to characterize the product of the oxidation reaction. Further studies involved the use X-ray absorption spectroscopy to characterize the nanoparticle catalysts before and after the oxidation reaction.

To better understand the reaction, silica was synthesized at different pHs using three different acids. The acids used to synthesize the silica were HCl, HNO3, …

A New Photochemical Method For The Preparation Of Amino Acid-α-Phenylthioesters And Peptide-α-Phenylthioesters, Tyrone Hogenauer

Open Access Theses & Dissertations

We describe the development of a novel resin with a photoreactive N-acylnitroindoline linker that allows for the synthesis of amino acid- (in solution) or peptide-α-thioesters using standard Fmoc/t-Bu standard solid phase peptide synthesis (SPPS). Recent advances have shown that the yields of this thioesterification reaction have dramatically increased due to a simple change in the order of addition of reagents. Upon illumination with UV-light, in the presence of N-hydroxybenzotriazole (HOBt), the amino acid- or peptide-α-OBt ester is generated by direct photo-release from the nitroindoline linker with minimal epimerization, followed by reaction with thiophenol in the dark to produce amino acid-α-phenylthioesters …

I-Kinetic And Mechanistic Investigations Of Amino Acid Substrates Reactivities With Ferryl Species, Ahmed Ibrahim Youssef Abouelatta

Wayne State University Dissertations

ABSTRACT

I-KINETIC AND MECHANISTIC INVESTIGATIONS OF AMINO ACID SUBSTRATES REACTIVITIES WITH FERRYL SPECIES

II-SYNTHESIS AND CHARACTERIZATION OF DERIVATIVES OF THE BN-TPEN LIGAND AND THEIR METAL COMPLEXES

by

AHMED IBRAHIM YOUSSEF ABOUELATTA

MAY 2011

Advisor: Dr. Jeremy Jacob Kodanko

Major: Chemistry (Organic)

Degree: Doctor of philosophy

The reactivity of tryptophan, methionine, aspartic acid, glutamic acid, histidine and hydrochloride salt of lysine amino acid substrates with the N4Py ferryl species was studied by UV-vis spectroscopy and product characterization. Based on kinetic isotope effect studies and product analysis, an ET-PT mechanism was proposed for the reaction of tryptophan substrate with N4Py ferryl and …

Conversion Of Racemic Ibuprofen To (S)-Ibuprofen, David Chavez-Flores

Open Access Theses & Dissertations

Ibuprofen is a common Non-Steroidal Anti-Inflammatory Drug (NSAID) sold as a racemic or equal mixture of (R) and (S) mirror-image enantiomers. Without patent protection, ibuprofen is an orphan drug even though one enantiomer, (S)-ibuprofen, provides relief three times faster than its racemic mixture with fewer side effects. The goal of this research was to develop a facile, environmentally benign (no waste of ibuprofen or catalysts), and inexpensive process to convert a commercially available racemic mixture of ibuprofen to the therapeutically active (S)-ibuprofen.

After many attempts, the most successful conversion of racemic ibuprofen to (S)-ibuprofen was the in situ racemization and …

Synthesis, Characterization And Biological Activity Of Copper (Ii) And Zinc (Ii) Complexes Of Thiosemicarbazones And Their N(4)-Substituted Derivatives Derived From 2,4-Dihydroxybenzaldehyde., Tan Kong Wai

Student Works (2010-2019)

Four thiosemicarbazones ligands (1-4) have been prepared with good yield by refluxing 2,4-dihydroxybenzaldehyde with thiosemicarbazide or N(4)-substituted thiosemicarbazide in ethanol or methanol. From these four ligands, 16 new ternary metal complexes (5-20) with the general formulation of M(B)L have been prepared from the reactions of metal acetates with 2,4-dihydroxybenzaldehyde N(4)-substituted thiosemicarbazone in the presence of N,N-heterocyclic base (M2+ = Zn2+ or Cu2+; B = 2,2'-bipyridine, (bpy); 1,10-phenanthroline, (phen); L2- = doubly deprotonated thiosemicarbazones = 2,4-dihydroxybenzaldehyde thiosemicarbazonato, (HT); 2,4-dihydroxybenzaldehyde 4-methylthiosemicarbazonato, (HM); 2,4-dihydroxybenzaldehyde 4-ethylthiosemicarbazonato, (HE) and 2,4-dihydroxybenzaldehyde 4-phenylthiosemicarbazonato, (HP)) These compounds have been characterized by elemental analyses, IR, UV-Vis, NMR and magnetic …

1, 2-Bis (Phenylsulfonyl)-1h-Indole As An Acceptor Of Organocuprate Nucleophiles, David C. Qian, Philip E. Alford, Tara L. S. Kishbaugh, Sean T. Jones, Gordon W. Gribble

Dartmouth Scholarship

1,2-Bis(phenylsulfonyl)-1H-indole is a novel example of an electron-deficient indole that undergoes nucleophilic attack at C-3. Though a variety of other organometallic nucleophiles fail to engender nucleophilic substitution, organocuprates produce 3-substituted 2-(phenylsulfonyl)-1H-indoles. These reactions contribute to the growing number of examples of nucleophilic addition to the indole core.

Synthesis Of Urethane Acrylate Macromer From Palm Oil-Based Polyol And Its Application As A Resin For Dental Composite., Fadheel A. A. Alsanabani

Student Works (2010-2019)

A slightly branched urethane acrylate macromer (UAM) was synthesized by reacting palm oil-based polyol with excess amounts of polymeric methylene diphenyl diisocyanate (MDI) to form urethane prepolymer, then reacted with 2-hydroxyethyl methacrylate (HEMA) and FT-IR spectroscopy confirmed the urethane and grafted acrylate groups. 0.2% by weight of camphoroquinone (CQ) and 0.8% by weight of ethyl-4-N,N-dimethylamino-benzoate (4EDMAB) by weight were added to render the experimental resins light-curable. Their viscosity, percentage of degree of conversion (%DC) and cross-linking density (CLD), percentage of volumetric polymerization shrinkage (%VPS), water sorption and solubility, flexural strength, modulus of elasticity and toughness were determined and compared to …

Synthesis Of Novel Glycosylidene-Based Quinolines, Peter H. Dobbelaar

Seton Hall University Dissertations and Theses (ETDs)

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Microporous Organic Polymers: Synthesis And Post Synthetic Modifications, Phillip Andrew Kerneghan

Theses and Dissertations (Comprehensive)

Microporous solids are an important class of materials that have been studied extensively. Newer to this field are Microporous Organic Polymers (MOPs) which are networks constructed from smaller organic building blocks and exhibit large surface areas, small pore sizes and low densities. It is due to these characteristics that MOPs have attracted attention because of their potential use in applications such as catalysis, chemical separations and gas storage.

In this thesis is described the synthesis of two novel MOPs, the first of which being a network based on benzenediboronic acid and triptycene building blocks linked together by boronate esters. This …

Determination Of The Activation Parameters Of Reaction Between [Fe(Cn6]-4 And K[Co(Hedta)No2]., Sammy Eni Eni

Electronic Theses and Dissertations

The kinetics of the oxidation of [Fe(CN)₆]^-4 by K[Co(HEDTA)NO₂] was studied in order to get the mechanism and the activation parameters of the reaction. Using a freshly-made Na₃PO₄ solution as the reaction medium with a pH of 6.00 the ionic strength was maintained at 0.10 M and the buffer molarity was 0.001 M.

The rate constant (k_obs) of the reaction between [Fe(CN)₆]^-4 and K[Co(HEDTA)NO₂] was determined at temperatures of 25.0°C, 27.5°C, 30.0°C, 35.0°, and 40.0°C. We explored this reaction by monitoring the evolution of ferricyanide, …

2,5-Dichlorothiophene 1,1-Dioxide, Jonathan B. Briggs, Wenling Jia, Mikael D. Jazdzyk, Glen P. Miller

Chemistry

The complete molecule of the title compound, C(4)H(2)Cl(2)O(2)S, is generated by crystallographic twofold symmetry, with the S atom lying on the rotation axis. In the crystal, the molecules are linked by C-H center dot center dot center dot O hydrogen bonds..

Polymeric Carbon Nanocomposites - Preparation, Characterization, And Properties, Lucia Veca

All Dissertations

Excellent thermal properties of carbon nanomaterials such as carbon nanotubes and newly discovered graphene make them the filler of choice for the development of thermal management materials. Graphene has been viewed as “ unrolled single-walled carbon nanotube and as a wonder material with many superlatives to its name ” thus there is an excessive interest in developing new synthetic routes towards large scale production of high quality graphene nanosheets.
In this dissertation, we report different methods that could further exfoliate the commercially available expanded graphite to nanometer sized carbon structures, “carbon nanosheets ”, for their use in highly thermal conductive …

Theoretical Studies Of 2,3 -Sigmatropic Rearrangements Of Allylic Selenoxides And Selenimides, Craig A. Bayse, Sonia Antony

Chemistry & Biochemistry Faculty Publications

Density-functional theory is used to model the endo and exo transition states for [2,3]-sigmatropic rearrangement of allylic aryl-selenoxides and -selenimides. The endo transition state is generally preferred for selenoxides if there is no substitution at the 2 position of the allyl group. Based upon the relative energies of the endo and exo transition states, enantioselectivity of rearrangements is expected to be greatest for molecules with substitutions at the 1- or (E)-3- position of the allyl group. Ortho substitution of a nitro group on the ancillary selenoxide phenyl ring reduces the activation barriers, increases the difference between the endo and exo …

Novel Strategy For The Synthesis Of Allenes., Mark-Henry Mbahmi Kamga

Electronic Theses and Dissertations

Allenes are very important chemical reagents in organic synthesis. Due to their high reactivity, they have been extensively used to carry out a variety of unique and effective chemical transformations including but not limited to ionic and free radical additions and transition metal catalyzed cyclizations. As the chemistry of this group of compounds is explored further and their applications expanded there is a need to develop alternative and cost effective methods for their synthesis. Our approach involves the synthesis of allenes from oxa-bicyclo-alkan-2-ones by methyllithium induced Eschenmoser fragmentation of the bicyclotosylhydrazone derivatives.

Solid Phase Amide Synthesis Using Staudinger-Vilarrasa Coupling And Microwave Irradiation, Ryan Patrick Schmidtz

Undergraduate Honors Thesis Collection

Amide bond formation is an already well documented area of organic chemistry, and is very useful in its application in medicine and pharmaceuticals. However, current methods have not been investigated with regards to optimization of reaction times, solvents, and energy sources. In addition, current methods also utilize toxic solvents to cleave the peptide from the solid phase resin. In our study, we combine the Staudinger and Vilarrasa coupling reactions with microwave irradiation to develop and optimize the synthesis of amide bonds through the use of a solid support. Instead of attaching the peptide to the solid support, our amide bond …

Multi-Walled Carbon Nanotubes-Modified Polymer Organic Photovoltaics, Tzu-Fan Chen

Masters Theses & Specialist Projects

Since the carbon nanotubes were first discovered by Iijima in 1991, CNTs have been the focus of intense research by many groups. Nearly 7000 papers and 700 theses on carbon nanotubes can be found from the eminent journals such as Nature and Science in the last decade. Since carbon nanotubes show impressive mechanical, physical and electronic properties such as high stiffness, high strength, low density, and excellent thermal conductivity, suggesting its role in light-weight high strength material application. A great quantity of important research has evidently been done in this field. The purpose of this thesis research is to investigate …

Synthesis Of Diruthenium Complexes As Connectable Molecular Components, George Ling

Renée Crown University Honors Thesis Projects - All

There have been great advances in electronics and technology within the last few years. The field of nanotechnology can further improve electronics in terms of efficiency, size and costs. There exist nanowires and nanotransistors that could accomplish this, however there exists no good method of connecting the two components together. Using the bottom-up approach and chemical synthesis, the goal is to synthesize molecular jumper cables and connectable molecular components (CMCs).

The template of the CMC will have two ruthenium (Ru) metal centers connected by a conjugated, organic bridge. Coordinated to the ruthenium metal centers will be different ligands that affect …

Carbohydrate Derivatives In Antibiotics Research, Yi Liang

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In this study, we investigated the potential applications of carbohydrates in the development of new antibiotics. To tackle the problem of multidrug-resistant variants of M. tuberculosis (MDR-TB), we investigated the biosynthesis pathways of trehalose, which has contributed to significant drug resistance. Some new methods were developed for the synthesis of potential inhibitors (6-azido-trehalose and 6,6'-diazido-trehalose) that have been designed to imitate the intermediate molecule (trehalose 6-phosphate, TPP) of OtsA-OtsB pathway. At the same time, some new antibacterial agents based on trehalose have been synthesized. Members of the 1,2,3-triazole family have shown interesting biological properties. Steroid derivatives have been developed in …

The Synthesis And Characterization Of Novel Microporous Hybrid Organic/Inorganic Materials, Kelly Whitenack

Renée Crown University Honors Thesis Projects - All

Inorganic chemistry is essential to the formulation and improvement of modern materials such as catalysts, semiconductors, optical devices, super conductors, and advanced ceramic materials.¹ New areas of inorganic chemistry are constantly being explored and new and often unusual inorganic compounds are constantly being synthesized and identified.¹ Recently the field of inorganic chemistry has witnessed the synthesis and characterization of microporous metal organic framework compounds (MOFs). Microporous organic/inorganic materials have a wide range of physical properties as well as applications. The physical properties and applications drive the investigation into the synthesis and discovery of new and useful hybrid MOF …