Physical Sciences and Mathematics Commons^™

Gpu-Accelerated Influenza Simulations For Operational Modeling, Peter Holvenstot

Masters Theses

Simulations of influenza spread are useful for decision-making during public-health emergencies. Policy-makers use models to predict disease spread and estimate the effects of various intervention strategies. Effective modeling of targeted intervention strategies requires accurate modeling of individual-level behavior and transmission. However, this greatly increases the computational costs of these agent-based models. In addition, if the models are used as an outbreak progresses, some operational decisions must occur rapidly in order to contain the spread of the disease.

Graphics Processing Units (GPUs) are a type of specialized processor used to drive graphical displays. Many recent devices also allow users to write …

The Nucleic Acid Binding Properties Of The Pwi Motif, Hamideh Keshavarz-Mohammadian

Masters Theses

The PWI motif is a highly conserved domain that contains a Proline-Tryptophan-Isoleucine (PWI) tripeptide sequence, for which it is named. Proteins that contain a PWI motif are known to be involved in the constitutive and alternative splicing and the 3'-end processing of messenger RNA transcripts. The hypothesized role of the PWI motif is to nonspecifically interact with nucleic acids. The PWI motif is capable of binding both doublestranded and single stranded forms of DNA and RNA. The structure of the highly conserved core of the PWI motif reveals that it adopts a four-helix bundle fold. The structured core domain, however, …

Chemistry Graduate Teaching Assistants: A Comparison Of The Classroom Discourse Within Expository And Problem-Based Learning Laboratories, Kelley M. Current

Masters Theses

Graduate Teaching Assistants (GTAs) commonly function as instructors within undergraduate chemistry laboratories. This study sought to explore and describe GTA classroom discourse within two distinct instructional modes, using discourse analysis as the theoretical framework. Theclassroom discourse within a series of verification style labs was comparedto the classroom discourse produced within a set of Problem-Based Learning (PBL) labs. The results suggest three primary findings: (1) the apparent relationship between the instructional mode and form of GTA classroom discourse, (2) the patterns in classroom discourse observed within a given instructional mode repeat, irrespective of content, and (3) the classroom discourse observed within …

Predictive Modeling In The Search For Vertebrate Fossils: Geographic Object Based Image Analysis (Geobia) In The Eocene Of Wyoming, Bryan Bommersbach

Masters Theses

The development and testing of predictive models for identifying productive fossil localities represents a promising interdisciplinary endeavor among geographic information scientists, paleoanthropologists, and vertebrate paleontologists. This thesis analyzed high resolution (2m spatial resolution) commercial satellite imagery from the Worldview-2 satellite of five areas of the Great Divide Basin using a GEographic Object-Based Image Analysis (GEOBIA) technique, which segments the image into spectrally homogeneous, multi-pixel image objects. In addition to allowing statistical analysis of the spectral characteristics of the image objects, GEOBIA techniques also let analysts incorporate expert knowledge and contextual information to improve classification accuracy. The spectral characteristics of the …

Stratigraphic Framework And Landsystem Correlation For Deposits Of The Saginaw Lobe, Michigan, Usa, Ivan R. Guzman

Masters Theses

Since the time of the Last Glacial Maximum (LGM) the south-central portion of the Lower Michigan Peninsula has been subject to several glacial advances and retreats by the Saginaw lobe. As part of the U.S Geological Survey Great Lakes Geological Mapping Coalition projects, several rotosonic borings were drilled between 2006 and 2013 in Barry, Kalamazoo and Calhoun Counties. Gamma ray logs and textural analyses were completed for each core. Five of these borings were selected according to their diamicton (till) content and correlated using water well logs and surficial geology maps. Glacial deposits such as diamicton serve as evidence of …

An Integral Framework For Sustainable Building Design, Bushra Asfari

Masters Theses

Selection of materials for building design is a delicate process hinged of a number of factors which can be cost or environmental related, depending on the objectives of the design. This process becomes more difficult when designers are faced with several material options for each building component. This thesis presents the design and development of a framework that enables designers understand the trade-off between cost and environmental related factors when selecting materials for building design. The framework is based on the integration of Autodesk Revit, Microsoft access, and modeling modified Harmony search multi-objective optimization tool adapted to account for material …

Owning Our Food System: Urban Community Gardening And Local Food Movements, Paige A. Edwards

Masters Theses

Food is a means of examining culture, including identity, autonomy and power. It creates relationships and memories between people via shared connections. Through food, I explore local food movements and urban community gardening.

We both ingest and produce garden-grown foods. This movement is often described as simple nostalgia. I suggest that it is a response against heavily processed foods within a system reliant on mass produced food. This desire for ownership pushes community gardens and other counter-hegemonic spaces forward in their goals of using social practice to challenge the established food industry and take control within their own lives.

Forbidden Fe Ii Emission Line Fluxes From The Weigelt Knots Of Eta Carinae, S. Towers

Masters Theses

Eta Carinae is an unparalleled object crossing many divisions of astrophysics. It has multiple, complicated and dynamic processes leading to absorption and emission spectra across all wavelengths from radio to hard x-ray. The spectra differ spatially across Eta Carinae's extended envelope and are changing rapidly over time.

The Weigelt Knots of Eta Carinae's ejecta emit spectra of numerous forbidden iron species lines, rare on Earth, but prevalent in the unique conditions surrounding this star. The Weigelt Knots' unique conditions occur almost nowhere else, making Eta Carinae, useful not only for understanding massive stars similar to it, but for understanding the …

Electron Capture By Multiply Charged Ions From Molecular Targets, Justin Harris

Masters Theses

State-selective differential cross sections for single-electron capture processes in collisions of Ne^q+ (q=2, 3, 5) ions with H₂O and CO₂ have been studied experimentally at laboratory collisions energies between 45 and 250 eV, and at scattering angles between 0^o and 7:20^o by means of translational energy-gain spectroscopy technique. The translational energy spectra show that only a few final states are populated depending on the projectile's charge state, laboratory scattering angle, and the collision energy. In addition, these measurements show that the dominant reaction channels are due to non-dissociative electron capture into excited states of …

A Climatological Study Of Drought In Southern Michigan, Rudy Bartels

Masters Theses

Drought has become a reoccurring phenomenon throughout many regions around the world. Significant drought conditions have beenobserved overthe pastfive decades in relation to economic, social, and agricultural impacts. In this study, Southern Michigan is investigated over the past 52 years from 1960-2012. The Standardized Precipitation Index (SPI) will be calculated over a 6-month timescale from monthly precipitations. Three variables including 500-mb heights, surface pressure maps, and sea surface temperatures, will be correlated with the SPI using sliding correlations and Pearson's R correlation to determine any relations between these variables and precipitation variations. We will further investigate the five driest, wettest, …

No Fracking Way! A Study On The Spatial Patterns Of And Changes In Perception And Distance From A Michigan Horizontal Hydraulic Fracturing Site, Shannon Mcewen

Masters Theses

The research investigates whether Michigan residents' perception of risk from an oil and natural gas (ONG) well site that employs the use of horizontal hydraulic fracturing (fracking) changes with distance. The research goal is to determine if residents that live farther from a fracking site perceive it to be more dangerous than those who live closer. Secondary research goals include determining if increasing distance from a fracking site cause residents to overestimate their proximity to a fracking site and if gender and education levels have an effect on residents' perception levels. Data were collected from residents in three counties in …

Multi-Threaded Automatic Integration Using Openmp And Cuda, Rida Assaf

Masters Theses

Problems in many areas give rise to computationally expensive integrals that beg the need of efficient techniques to solve them, e.g., in computational finance for the modeling of cash flows; for the computation of Feynman loop integrals in high energy physics; and in stochastic geometry with applications to computer graphics.

We demonstrate feasible numerical approaches in the framework of the PARINT multivariate integration package. The parallel environment is provided by the cluster of the High Performance Computational Science (HPCS) laboratory, with 22 (16- or 32-core) nodes, NVIDIA GPUs, and Intel Xeon Phi coprocessors.

Monte Carlo integration is implemented in CUDA …

Theoretical And Spectroscopic Analysis Of Ch...Π Interactions Of Fluorinated Aromatic Systems, Anuradha Gayathri Akmeemana

Masters Theses

CH...π interactions are non-covalent interactions which occur in organic compounds that are important in biological and chemical sciences in many ways. Microwave spectroscopy is an important technique that can be used to detect CH...π interactions in the gas phase molecules. Previously microwave spectroscopic studies of complexes containing CH...π interactions, benzene...HCCH (Ulrich, N.W.; Seifert, N.A.; Dorris, R.E.; Peebles, R.A.; Pate, B.H.; Peebles, S.A., Phys. Chem. Chem. Phys. 2014, 16, 8886-8894) and fluorobenzene...HCCH (Ulrich, N.W.; Songer, T.S.; Peebles, R.A.; Peebles, S.A.; Seifert, N.A.; Perez, C.; Pate, B.H. Phys. Chem. Chem. Phys., 2013, 15, 18148-18154) were done at Eastern Illinois University and the …

Statistical Analysis Of Sleep Patterns In Drosophila Melanogaster, Luyang Wang

Masters Theses

“Sleep is one of the most preserved and restorative behaviors of animals and is important in human health. Lack of sleep may cause numerous diseases. So the study of sleep rhythms is very essential and complicated. In order to simplify the process of studying sleep, the fruit fly Drosophila melanogaster, is utilized as a model organism for several reasons. Some of the molecular mechanisms that contribute to the circadian clock in the fruit fly were also found to generate similar cycles in mammals. In order to study sleep patterns in the fruit fly, experiments were designed and performed to …

A Cloud Brokerage Architecture For Efficient Cloud Service Selection, Venkata Nagarjuna Dondapati

Masters Theses

"The expanding cloud computing services offer great opportunities for consumers to find the best service and best pricing, which however raises new challenges on how to select the best service out of a huge pool. It is obvious time-consuming for consumers to collect the necessary information and analyze all service providers to make the decision. It is also a highly demanding task from a computational perspective, because the same computations may be conducted repeatedly by multiple consumers who have similar requirements. In this paper, we propose a novel brokerage-based architecture in the cloud, where the cloud brokers is responsible for …

Development Of Structural Basins And Domes On The Sinn El-Kaddab Plateau, Egypt: Insights From In Situ Data And Application Of Moderate Resolution Orbital Imagery Of The Seiyal Fault, Thomas J. Jerris

Masters Theses

"The Seiyal Fault, one of many east-west trending faults located in the Western Desert of Egypt, and associated structural basins and domes are investigated using remote sensing imagery and field studies. Analysis of Shuttle Reconnaissance Topography Mission data, multi-spectral data from the Landsat Thematic Mapper (LM), Landsat 7 Enhanced Thematic Mapper Plus (ETM+), the Advanced Spaceborne Thermal Emission and Reflectometer (ASTER) data, and imagery from Google Earth. Band combinations 3-2-1 and 7-4-2 in ETM+ and 3N-2-1 and 7-3-1 in ASTER, and Google Earth provided the most useful images for geologic mapping. The Seiyal Fault is best characterized as a zone …

Efficient Data Access In Mobile Cloud Computing, Siva Naga Venkata Chaitanya Vemulapalli

Masters Theses

"This thesis focuses on the development of efficient data transfer mechanism among mobile devices using Mobile cloud computing paradigm. Mobile cloud computing is coupling of mobile computing and cloud computing. In the Mobile cloud computing paradigm, users connect to cloud service providers over the Internet and leverage the cloud resources to perform their processing, storage and communication tasks. In this thesis, the focus is on communication tasks among mobile devices performed using Mobile cloud computing paradigm.

Communication or data sharing among mobile devices is often limited by proximity of the devices. This limitation can be removed by employing Mobile cloud …

Access Control Delegation In The Clouds, Pavani Gorantla

Masters Theses

"Current market trends need solutions/products to be developed at high speed. To meet those requirements sometimes it requires collaboration between the organizations. Modern workforce is increasingly distributed, mobile and virtual which will incur hurdles for communication and effective collaboration within organizations. One of the greatest benefits of cloud computing has to do with improvements to organizations communication and collaboration, both internally and externally. Because of the efficient services that are being offered by the cloud service providers today, many business organizations started taking advantage of cloud services. Specifically, Cloud computing enables a new form of service in that a service …

A Remote Sensing Investigation Of Elevated Sub-Horizontal Topographic Surfaces In The Wichita Mountains, Oklahoma, Liang Xue

Masters Theses

"Multiple elevated horizontal to sub-horizontal topographic surfaces are present in the Wichita Mountains, Oklahoma. Elevated topographic surfaces, developed primarily on granite bedrock with gentle slopes of 0.5 to 7⁰,were investigated using 1) Digital Elevation Models (DEMs) extracted from NAD 27 UTM coordinates, 2) Google Earth imagery, and 3) USGS topographic maps. In the western Wichita Mountains prominent topographic surfaces at elevations of 720 ± 5 m, 685 ± 5 m, and 660 ± 5 m are well preserved on at least four different mountains (e.g., Solder's Peak, King Mt.) and can be correlated with similar surfaces on at least seven …

Investigation Of Angiogenic Effects Of Bioactive Borate Glass Microfibers And Beads In A Rodent Model, Richard Jeffrey Watters

Masters Theses

"The primary objective of this research project was to evaluate the effects of three different compositions of bioactive glass microfibers (45S5, 13-93B3, and 13-93B3Cu) and bioactive glass beads (13-93, 13-93B3, and 13-93B3Cu) on angiogenesis in subcutaneous tissue in the SKH1 'hairless' mouse. Microvascular responses to the bioactive glass implants were investigated via three experimental approaches: noninvasive vital imaging of microvasculature in dorsal skin windows; quantitative histomorphometry of microvascular densities; and quantitative PCR measurements of mRNA expression of pro-angiogenic cytokines VEGF and FGF-2. The live imaging of dorsal skin window preparations in the hairless SKH1 showed the formation of a halo-like …

Pn Anisotropy Tomography Of The Colorado Plateau And Adjacent Areas, Shengyao Cheng

Masters Theses

"The Pn tomography method utilizes seismic waves that refract along the Moho interface to perform inversion in order to investigate velocity anomalies and seismic anisotropy in the uppermost mantle. Results from Pn tomography can provide important information about the composition, temperature, and tectonic processes beneath the study area. Over the past decades, numerous seismic and geologic studies have been conducted in the Colorado Plateau and its adjacent areas to reveal crustal and mantle structures and processes responsible for the diverse surface geological features and tectonic events that have occurred in this area. To investigate lateral variations in the uppermost mantle …

Privacy Preservation Using Spherical Chord, Doyal Tapan Mukherjee

Masters Theses

"Structured overlay networks are primarily used in data storage and data lookup, but they are vulnerable against many kinds of attacks. Within the realm of security, overlay networks have demonstrated applicability in providing privacy, availability, integrity, along with scalability. The thesis first analyses the Chord and the SALSA protocols which are organized in structured overlays to provide data with a certain degree of privacy, and then defines a new protocol called Spherical Chord which provides data lookup with privacy, while also being scalable, and addresses critical existing weaknesses in Chord and SALSA protocols. Spherical Chord is a variant of the …

Crime Pattern Detection Using Online Social Media, Raja Ashok Bolla

Masters Theses

"In this research, we show online social networks can be used to study crime detection problems. Crime is defined as an act harmful not only to the individual involved, but also to the community as a whole. It is also a forbidden act that is punishable by law. Crimes are social nuisances that place heavy financial burdens on society. Here we look at use of data mining followed by sentiment analysis on online social networks, to help detect the crime patterns. Twitter is an online social networking and microblogging service that enables users to post brief text updates, also referred …

Microwave Assisted Reconstruction Of Optical Interferograms For Distributed Fiber Optics Sensing & Characterization Of Pcb Dielectric Properties Using Two Striplines On The Same Board, Lei Hua

Masters Theses

"A new concept, the microwave-assisted reconstruction of an optical interferogram for distributed sensing, was developed to resolve both the position and reflectivity of each sensor along an optical fiber. This approach involves sending a microwave-modulated optical signal through cascaded fiber optic interferometers. The optical spectrum of each sensor can be reconstructed by sweeping the optical wavelength and detecting the modulation signal. A series of cascaded fiber optic extrinsic Fabry-Perot interferometric sensors was used to prove the concept. The microwave-reconstructed interferogram matched well with those recorded individually from a traditional optical spectrometer. The application of distributed strain measurement was also investigated. …

Energy Efficient Scheduling And Allocation Of Tasks In Sensor Cloud, Rashmi Dalvi

Masters Theses

"Wireless Sensor Network (WSN) is a class of ad hoc networks that has capability of self-organizing, in-network data processing, and unattended environment monitoring. Sensor-cloud is a cloud of heterogeneous WSNs. It is attractive as it can change the computation paradigm of wireless sensor networks. In Sensor-Cloud, to gain profit from underutilized WSNs, multiple WSN owners collaborate to provide a cloud service. Sensor Cloud users can simply rent the sensing services which eliminates the cost of ownership, enabling the usage of large scale sensor networks become affordable. The nature of Sensor-Cloud enables resource sharing and allows virtual sensors to be scaled …

Shear-Wave Splitting And Mantle Deformation Beneath The Western Tibetan Plateau, Melissa Ann Ray

Masters Theses

"The Tibetan Plateau has been an enigma to the scientific community since scientists first began to focus their attention on the area. Numerous studies over the decades were conducted to address how the plateau formed, mostly in the central and eastern portions of the Tibetan Plateau. Many questions still remain regarding the western Tibetan Plateau, and this study will add constraints to the mechanisms which regulated the formation of the plateau.

Data was acquired from over 13,000 measurements from 172 stations covering the western region of the plateau encompassing the Qiangtang Terrane, the Lhasa Terrane, and the Himalayan Orogenic Zone. …

An Iterative Algorithm For Variational Data Assimilation Problems, Xin Shen

Masters Theses

"Data assimilation is a very powerful and efficient tool to use collected raw data for improving model prediction in numerical weather forecasting, hydrology, and many other areas of geosciences. In this thesis, an iterative algorithm [23] of variational data assimilation with finite element method is utilized to study different models. One motivation for this fundamental mathematical study is to provide a potential tool for simulation of CO₂ sequestration by extending it to more realistic and sophisticated models in the future. The basic idea of variational data assimilation is to utilize the framework of optimal control problems. We apply the …

On Temporal And Frequency Responses Of Smartphone Accelerometers For Explosives Detection, Srinivas Chakravarthi Thandu

Masters Theses

"The increasing frequency of explosive disasters throughout the world in recent years have created a clear need for the systems to monitor for them continuously for better detection and to improve the post disaster rescue operations. Dedicated sensors deployed in the public places and their associated networks to monitor such explosive events are still inadequate and must be complemented for making the detection more pervasive and effective. Modern smart phones are a rich source of sensing because of the fact that they are equipped with wide range of sensors making these devices an appealing platform for pervasive computing applications. The …

Ecology Of A Declining Great Plains Fish, Fundulus Sciadicus, In The Missouri Ozarks, Gregory Travis Thompson

Masters Theses

"Anthropogenic habitat disturbances are of growing concern due to their impacts on native biota, especially in freshwater ecosystems. Damming, channelization, urbanization, wetland draining, and non-native fish introductions all play large roles in habitat homogeneity, fragmentation, and species competition. This has negative effects on native fish and invertebrate species. In the Midwestern United States, the plains topminnow (Fundulus sciadicus) has been declining across its range, to the point of becoming a species of special concern in Missouri. This is possibly due to a combination of the above anthropogenic habitat disturbances. To better understand the ecology of the plains topminnow …

Top-K With Diversity-M Data Retrieval In Wireless Sensor Networks, Kiran Kumar Puram

Masters Theses

"Wireless Sensor Network is a network of a few to several thousand sensors deployed over an area to sense data and report that data back to the base station. There are many applications of wireless sensor networks including environment monitoring, wildlife tracking, troop tracking etc. The deployed sensors have many constraints like limited battery, limited memory and very little processing capacity. These constraints show direct effect on the network life time.

In many applications of Wireless Sensor Networks, such as monitoring chemical leak, the user is not interested in all the data points from the entire region, but may want …