Physical Sciences and Mathematics Commons^™

Analyzing Repetitive Sequences With Structured Dynamic Bayesian Networks, Thomas. L. Lake

Masters Theses

Time series often feature structure that is known a priori and easily described using natural language terms such as repetitive, symmetric, seasonal, and self-similar. However, the typical conjugate priors used in Bayesian analysis do not capture such complex phenomena well. As a result of this mismatch, known structure is modeled poorly or completely ignored. Focusing on time series with repetitive structure, this thesis proposes to overcome this problem by reducing rather than in- creasing the capacity of a well know time series model, the Hidden Markov Model. Through a careful choice in the way model capacity is reduced the model …

Geological Controls On Stratigraphy And Sedimentation Of The Mississippian Marshall Formation, Michigan Basin, U.S.A., Joseph G. Adducci

Masters Theses

An understanding of regional orogenic, climatic, and eustatic processes is critical to the interbasinal correlation of Paleozoic strata in eastern North America. Tectonic activity associated with the culmination of Appalachian Orogenic events has been shown to have regional influence on paleostructure and sediment dispersal in the Appalachian foreland basin and adjacent intracratonic Illinois and Michigan basins. The culmination of the Acadian Orogeny at the end of the Devonian represents the beginning of a period of general tectonic quiescence extending throughout the early and middle Mississippian in eastern North America. Early Mississippian strata in the Michigan basin is distinctive and marks …

Acceleration Of Agent-Based Pandemicmodeling On Multiple Gpus, Barzan Shekh

Masters Theses

Epidemiology computation models are crucial for the assessment and control of public health crises. Agent-based simulations of pandemic inuenza are useful for forecasting the infectious disease spreading in order to help public health policy makers during emergencies. In such emergencies decisions are required for public health preparedness in cycles of less than a day, and the agent-based model should be adaptable and tractable for quick and simple calibration with low computational overhead.

GPU accelerated computing involves the use of a graphics processing unit (GPU) in combination with the CPU to perform heterogeneous computing by o_oading a compute-expensive portion of the …

Recent Seismicity And Regional Extension Aithin Southwestern Montana, Usa, Jessica Szkody

Masters Theses

Southwestern Montana has experienced several large damaging earthquakes over the last 100 years, but many minor ones that unveil the nature of the intraplate seismicity. The region in this study is part of two distinct Late Cretaceous tectonic provinces, the Rocky Mountain Foreland Basement (RMFB) and the Cordilleran Fold and Thrust Belt (CFTB). Relationships between the two provinces and their faults show that the focal mechanisms are different. Deep focal mechanisms (between 8 and 10 km) within the RMFB can be placed on a specific fault, with many smaller events falling within the hanging wall. The hypocenters within the hanging …

Synthesis Of New Platinum-Based Anti-Cancer Drugs, Saud O. Albaroodi Yasser

Masters Theses

Cancer is considered the second leading cause of death after heart attack. Different treatments have been applied to kill cancer cells such as chemotherapy, which is the use of chemicals or drugs in order to treat cancer cells. Platinum-based anti cancer drugs are the backbone of chemotherapy, they play a crucial role in treating various malignant tumor. However, the disadvantages of these drugs are very painful on patients, such as nephrotoxicity and ototoxicity. In the last four decades, thousands of platinum-based anticancer drugs have been synthesized for hope in find a new drug with higher efficacy and less side effects.In …

Anomalous Thermal Indicators From Authigenic Minerals In Upper Paleozoic Strata Of The Michigan Basin, Kyle Cox

Masters Theses

Indications of anomalous paleo-temperatures exist in strata of the Michigan basin, USA. The thermal history of the basin was investigated through identification and analysis of authigenic components in two Upper Paleozoic strata, the Devonian Dundee Formation and Mississippian Marshall Sandstone. Formation conditions for diagenetic phases in both units were estimated through a variety of means and compared to conditions expected for a simple burial model. Authigenic clays identified in the Marshall via X-ray diffraction are expected to have formed at temperatures above what would have been produced by burial alone. Stable isotope and fluid inclusion analysis indicate the same for …

Lithologic Properties Of The Upper Ordovician Utica Formation, Michigan Basin, Usa: A Geological Characterization And Assessment Of Carbon Dioxide Confinement Potential, Frank Richard Sattler

Masters Theses

The Utica/Maquoketa Shale is considered to be the primary confining layer for Cambro-Ordovician CO₂ sequestration targets in the Midwest in the Michigan and Illinois basins, respectively. Prospective regional geologic seals in mudrock formations possess a combination of lithologic properties including nanometer scale pore space, elevated breakthrough pressures for non-wetting fluid phases and ductile mechanical deformation. Mineralogical composition is related to and typically controls these properties.

The objective of this study is to investigate the geological controls on stratigraphic and lithologic variability in the Utica/Collingwood in the Michigan basin. Twelve conventional cores and hundreds of modern well logs from the …

Thermal History Of The Michigan Basin: Results From Thermal Maturation Data And Geodynamic Modelling, Kirk A. Wagenvelt

Masters Theses

Thermal cooling, crustal convection, high temperature fluid advection, and 1.0 Km of eroded overburden are required to explain thermal maturation observations in the Michigan Basin. Observed tectonic subsidence in central Michigan follows an exponential decay indicative of thermal cooling following an anomalous heating event. Crustal convection is responsible for episodes of rapid subsidence coincident with the late Paleozoic Appalachian orogeny. Fluid advection through dilated faults reactivated by the Alleghanian orogeny brought hot fluids (as much as 255⁰ C) to the surface and impacted thermal maturation of organic matter in sediments. Models require 1.0 Km of eroded overburden to model thermal …

Wind Oscillator For Power Genration, Rs Vewen Ramasamy

Masters Theses

This thesis describes in detail the design, mechanical, electrical and software considerations in developing a working model for the non-conventional wind power converter called Wind Oscillator. This was based on the concept developed and patented by Tianshu Liu in the paper “Wind Oscillator and Rotor for Power Generation”[1]. In order to verify the practicality of this idea, a working model of the Wind Oscillator was designed, built and tested in the Western Michigan University wind tunnel facility. LabVIEW data acquisition and photogrammetry was performed on the model so as to evaluate the power generated by the Wind Oscillator and to …

Determining Discharge From The Fallasburg Dam And The Hydrology Of The Flat River Bypass Channel, Lowell, Michigan, Seth Kuiper

Masters Theses

The Fallasburg Dam on the Flat River is required to release 110 cfs to the Bypass Channel. Residents have often reported low flows in the river, especially during the summer. The hydrology of the Bypass Channel downstream from the dam was investigated to determine whether the required flow was being released. Discharge measured at multiple transects reveal a shifts from gaining to losing conditions during the year. Gaining conditions occur during the spring and after significant rain events; losing conditions occur in the summer during dry periods. Five discharge measurements in 2013 and three in 2014 reveal flows less than …

Monte Carlo Simulations On Xeon Phi: Offload And Native Mode, Bryar Shareef

Masters Theses

In high performance computing, Monte Carlo methods are widely used to solve problems in various areas of computational physics, finance, mathematics, electrical engineering and many other fields. We have designed Monte Carlo methods to compute Feynman loop integrals in high energy physics, and to solve problems in stochastic geometry with applications to computer graphics, such as the tetrahedron picking problem leading to 12 dimensional integrals.

The Intel Xeon Phi is a coprocessor based on a Many Integrated Core (MIC) architecture to gain extreme performance. We have used two different modes, "offload" and "native", to implement the simulations. In offload mode, …

Naturally-Occurring Metals Concentrations In Michigan Soils: A 2015 Survey, Zachary Lowell Spotts

Masters Theses

Closure of hazardous waste sites can be aided through the use of a soil background survey for metals. Data for these studies come from either field sampling or publicly available environmental files. Previous studies were conducted in Michigan, known as the Michigan Background Soil Survey (MBSS). The current update is a refinement and improvement of the 2005 update. New data was collected from publicly available environmental files and other sources. Both the current update and the 2005 update differentiated data by soil type and glacial lobe. GIS analysis was used to observe spatial distribution of the data and to determine …

A Glance At Tropical Operations And Tropical Linear Algebra, Semere Tsehaye Tesfay

Masters Theses

The tropical semiring is ℝ ∪ {∞} with the operations x ⊕ y = min{x, y}, x ⊕ ∞ = ∞ ⊕ x = x, x ⊙ y = x + y, x ⊙ ∞ = ∞ ⊙ y = ∞. This paper explores how ideas from classical algebra and linear algebra over the real numbers such as polynomials, roots of polynomials, lines, matrices and matrix operations, determinants, eigen values and eigen vectors would appear in tropical mathematics. It uses numerous computed examples to illustrate these concepts and explores the relationship between certain tropical matrices and graph …

A Simpler Route To Building Photochromic Cinnamaldehyde Semicarbazones, Byron R. Ebbert

Masters Theses

Photochromic semicarbazones are an interesting group of compounds that show potential in a broad range of applications, including as a more environmentally friendly replacement for photochromic metal complex compounds. Previous work has shown the feasibility to synthesize photochromic cinnamaldehyde semicarbazones (CSCs) from a benzaldehyde and a protected acetaldehyde Wittig reagent. A new, quicker, and cheaper approach to constructing these CSCs from crotonaldehyde was explored in this research. A three reaction sequence would convert crotonaldehyde to a CSC; first, an allylic bromination of the semicarbazone with N-bromosuccinimide (NBS); second, an Arbuzov reaction to prepare the semicarbazone phosphonate; and finally a condensation …

Derivatization And Separation Of Natural Estrogens (Estrone, 17Β-Estradiol, And Estriol) Using Gas Chromatography With Flame Ionization Detection (Gc-Fid), Dena L. Guptill

Masters Theses

A major cause of concern for estrogens found in the environment is that even at very low concentrations (10-100 ng/L) they can have a negative effect on aquatic ecosystems by disrupting endocrine systems. Due to the increasing importance of monitoring the levels of estrogens in the environment, a detection method was developed to identify and quantify three natural estrogens (estrone, 17β-estradiol and estriol) using gas chromatography with flame ionization detection (GC-FID). In addition, the efficacy of two derivatizing agents, N,O-bis(trimethylsilyl) acetamide (BSTA) and N,O-bis(trimethylsilyl)trifluoroacetamide (BSTFA), was evaluated. The GC detector (FID) was most responsive with E3, followed by E1 and …

Channel Morphology At A Meander Bend Chute Cutoff Partially Obstructed By Woody Debris, Drew Sobczak

Masters Theses

Field and flume experiments have examined the conceptual model for a meander bend in depth. Large woody debris piles are often associated with the development of a chute cutoff due to local aggradation and deflection of flow. This paper examines the bed morphology of a meander bend chute cutoff that is partially obstructed by woody debris. The bed morphology of the channel around the woody debris pile as well as the head of the cutoff are mapped. The pile is shielding the point bar immediately behind it and causing a narrow, deep channel on either side of the pile. The …

Hyperbolic Geometry With And Without Models, Chad Kelterborn

Masters Theses

We explore the development of hyperbolic geometry in the 18th and early 19th following the works of Legendre, Lambert, Saccheri, Bolyai, Lobachevsky, and Gauss. In their attempts to prove Euclid's parallel postulate, they developed hyperbolic geometry without a model. It was not until later in the 19th century, when Felix Klein provided a method (which was influenced by projective geometry) for viewing the hyperbolic plane as a disk in the Euclidean plane, appropriately named the "Klein disk model". Later other models for viewing the hyperbolic plane as a subset of the Euclidean plane were created, namely the Poincaré disk model, …

Investigation Of Β-Cyclodextrin's Ability In Differentiating Chiral Guest Molecules And Synthesis Of 1,6-Diphenyl-2,4-Hexadiene-1,6-Dione, Guang Yang

Masters Theses

This research work comprised two projects. The first one mainly focused on the synthesis of 12 alanine derivatives and analysis of their interactions with β-cyclodextrin through ¹H NMR titration. And the other project was an investigation of the conjugation effect of alkynones in its addition reactions with tributyltin hydride.

The synthesis of the alanine derivatives involved methyl esterification of alanine and then the substitution of an NH hydrogen with a benzoyl group. A total of 4 different substitution groups, labeled as the "A" groups, were introduced on the para-position of the benzoyl's phenyl group. Since alanine has one chiral …

Collaboration Portal For Researchers At Eastern Illinois University, Fatemeh Khastkhodaardekani

Masters Theses

This thesis addresses a need for an online collaboration environment for the researchers at Eastern Illinois University (EIU). As the solution, it provides a portal for researchers (students and faculties) who wish to explore and collaborate on projects based on ideas from those who may not have the necessary skills. This is considered to help developing projects based on the ideas as well as making teams, and teach different groups of people different perspectives. Therefore, it offers a learning environment. I started off by examining existing tools and methodologies to satisfy this purpose. As the result, the deliverable project is …

Novel Bodipy Dyes For Dye-Sensitized Solar Cells, Hafsah Klfout

Masters Theses

Dyes-sensitized solar cells (DSCs) are of importance to efficient conversion of solar energy to electricity. The modern version of a DSC is a titanium dioxide nanoparticles-based electrochemical device, in which solar energy is absorbed by dye molecules and electrons from excited dye molecules are injected into the conduction band of titanium dioxide nanoparticle. The electrons are then transported through a network of interconnected TiO₂ particles to the fluorine- tin -oxide layer to the external circuit. In this process dye molecules are crucial to the device's energy conversion efficiency.

Boron-dipyrromethenes, known as BODIPY dyes, show strong absorption in the visible …

The Effects Of Industrial Biomass Gasification Ash As A Soil Amendment On The Earthworm Eisenia Fetida, Michael J. Blackowicz

Masters Theses

Soil application of solid residues from thermal conversion of biomass (i.e. combustion and pyrolysis) has become a topic of interest in recent years. However, there exists a gap in the literature with regard to soil application of gasification residues and their effects on soil health and soil macroorganisms. This study investigates the effects of three different ashes (hardwood oak/hickory, hardwood willow, corn stover), collected from industrial biomass gasification reactors (University of Minnesota Morris, Eastern Illinois University), as a soil amendment on the composting worm Eisenia fetida. Additionally, ash samples were analyzed for total polycyclic aromatic hydrocarbons (PAHs) and potentially toxic …

A Gaussian Mixture Model For Automated Vesicle Fusion Detection And Classification, Haohan Li

Masters Theses

"Accurately detecting and classifying vesicle-plasma membrane fusion events in fluorescence microscopy, is of primary interest for studying biological activities in a close proximity to the plasma membrane. In this paper, we present a novel Gaussian mixture model for automated identification of vesicle-plasma membrane fusion and partial fusion events in total internal reflection fluorescence microscopy image sequences. Image patches of fusion event candidates are detected in individual images and linked over consecutive frames. A Gaussian mixture model is fit on each image patch of the patch sequence with outliers rejected for robust Gaussian fitting. The estimated parameters of Gaussian functions over …

Sensor Authentication In Collaborating Sensor Networks, Jake Uriah Bielefeldt

Masters Theses

"In this thesis, we address a new security problem in the realm of collaborating sensor networks. By collaborating sensor networks, we refer to the networks of sensor networks collaborating on a mission, with each sensor network is independently owned and operated by separate entities. Such networks are practical where a number of independent entities can deploy their own sensor networks in multi-national, commercial, and environmental scenarios, and some of these networks will integrate complementary functionalities for a mission. In the scenario, we address an authentication problem wherein the goal is for the Operator Oⁱ of Sensor Network S^{i …}

Comprehensive Benefits Of Green Roofs, Madison R. Gibler

Masters Theses

"Green infrastructure uses vegetation, soils, and natural processes to manage water and create healthier urban environments, providing traditional roof services and alternative stormwater management technologies. Other benefits and impacts are not yet fully understood or valued. Research conducted assesses specific stormwater benefits of green roofs, providing information on nutrient leaching from media; and analyzes potential energy benefits through side-by-side comparisons of full-scale white, traditional black rubber, and green roofs in the mid-continent Missouri climate. Roofing media selection impacted leaching of nutrients, suspended solids, and organic carbon from the tested green roof media. Thermal properties were investigated at the building level, …

A New Technique For Modeling The Geomorphology Of A Slow Moving, Soft-Slope Landslide Using Terrestrial Lidar, Nathan Bradley Rohrbaugh

Masters Theses

"Soft slope movement is a big problem whether it involves an engineered slope, one that is near infrastructure, or both. Active landslides that fail slowly sometimes allow ample time to affect remedial works. In order to plan effective remedial works, there needs to be a model of the entire geometry of the slide. This thesis describes a new approach to evaluate the morphology of slope geometry using Light Detection and Ranging (LiDAR) data obtained from simple targets strategically positioned on a slide body. The data was gathered in three-month intervals over a period of one year to allow enough time …

Fuzzy Adaptive Resonance Theory: Applications And Extensions, Clayton Parker Smith

Masters Theses

"Adaptive Resonance Theory, ART, is a powerful clustering tool for learning arbitrary patterns in a self-organizing manner. In this research, two papers are presented that examine the extensibility and applications of ART. The first paper examines a means to boost ART performance by assigning each cluster a vigilance value, instead of a single value for the whole ART module. A Particle Swarm Optimization technique is used to search for desirable vigilance values. In the second paper, it is shown how ART, and clustering in general, can be a useful tool in preprocessing time series data. Clustering quantization attempts to meaningfully …

Rote-Lcs Learning Classifier System For Classification And Prediction, Benjamin Daniels

Masters Theses

"Machine Learning (ML) involves the use of computer algorithms to solve for approximate solutions to problems with large, complex search spaces. Such problems have no known solution method, and search spaces too large to allow brute force search to be feasible. Evolutionary algorithms (EA) are a subset of machine learning algorithms which simulate fundamental concepts of evolution. EAs do not guarantee a perfect solution, but rather facilitate convergence to a solution of which the accuracy depends on a given EA's learning architecture and the dynamics of the problem.

Learning classifier systems (LCS) are algorithms comprising a subset of EAs. The …

Cappack Devices For Enhanced Qnmr Measurements In 1H Nmr Spectroscopy, Lingyu Chi

Masters Theses

"Quantitative NMR analyses can be improved by adding well-defined external references for measuring sample properties on absolute scales. Special Capillary-tube Package (CapPack) devices were invented that provide in situ information (e.g., temperature, pH, pressure, integration, chemical shift, lock, etc.) about a sample with spectral imprimaturs. A new microscale glass-sealing technique produced CapPack devices that can survive high temperatures and pressures in harsh environments. Two CapPack devices are discussed: (1) Gradient CapPack-- a device for examining the irradiation bandwidth of solvent-suppression pulse sequences; (2) T₁ CapPack - a device for examining the T₁ robustness of solvent-suppression pulse sequences. A …

Ph Dependent Antibiotic Resistance Of An Alkaliphilic, Halotolerant Bacterium Isolated From Soap Lake, Washington, Tiffany Charlynn Edwards

Masters Theses

"Soap Lake, located in Washington State, is a meromictic, soda lake. Many bacterial isolates retrieved from Soap Lake have been noted to possess resistance to multiple antibiotics. A likely explanation for the wide range of antibacterial resistance exhibited by these strains is due to the impact of high alkalinity on the antibiotics themselves and not due to the presence of antibiotic resistance genes. The aim of our study was to determine if select antibiotics are effective against Halomonas eurialkalitoleranis, a bacterium capable of growth over a wide range of neutral to alkaline pH values, to investigate the influence of alkalinity …

Seismic Structural Investigation And Reservoir Characterization Of The Moki Formation In Maar Field, Taranaki Basin, New Zealand, Mohammed Dhaifallah M Alotaibi

Masters Theses

"The Maari Field is a large oil field located in the southern part of the Taranaki Basin, New Zealand. The field is bounded by two major structures, the Eastern Mobile Belt and Western Stable Platform. The Maari Field produces 40,000 BOPD (Barrels of Oil per Day) from five wells from reservoirs in the Moki Formation. The Miocene Moki Formation was deposited as part of the Wai-iti Group and consists of sandstone interbedded with siltstone and claystone. The sandstone of the Moki Formation is characterized by a submarine fan. It is distributed along the southern and central Taranaki shelf. Three-dimensional seismic …