Open Access. Powered by Scholars. Published by Universities.®
Physical Sciences and Mathematics Commons™
Open Access. Powered by Scholars. Published by Universities.®
- Discipline
-
- Chemistry (766)
- Physics (486)
- Statistics and Probability (379)
- Medicine and Health Sciences (360)
- Life Sciences (339)
-
- Earth Sciences (280)
- Biostatistics (266)
- Computer Sciences (245)
- Mathematics (223)
- Public Health (223)
- Epidemiology (212)
- Engineering (208)
- Biology (175)
- Astrophysics and Astronomy (149)
- Biochemistry, Biophysics, and Structural Biology (126)
- Biochemistry (118)
- Medical Sciences (96)
- Geology (76)
- Oceanography and Atmospheric Sciences and Meteorology (73)
- Social and Behavioral Sciences (59)
- Arts and Humanities (57)
- Environmental Sciences (56)
- Computer Engineering (45)
- Oceanography (37)
- Electrical and Computer Engineering (33)
- Library and Information Science (33)
- Mechanical Engineering (23)
- Cell and Developmental Biology (21)
- Organic Chemistry (21)
- Keyword
-
- Chemistry (110)
- Physical Sciences and Mathematics, Chemistry (84)
- Physics (83)
- Mathematics (67)
- Dietary inflammatory index (35)
-
- Physical Sciences and Mathematics, Mathematics (29)
- South Carolina (29)
- Data representation (28)
- Inflammation (28)
- Robert Hooke (28)
- Scientific imaging (28)
- Nanoparticles (24)
- Deep learning (20)
- Machine learning (20)
- Machine Learning (18)
- Obesity (17)
- Physical Sciences and Mathematics, Physics (17)
- Statistics (16)
- Diet (15)
- Dynamics (15)
- Synthesis (15)
- United States (15)
- Cancer (14)
- Catalysis (14)
- Lorentz (14)
- Physical Sciences and Mathematics, Earth Sciences, Geology (14)
- Climate change (13)
- Deep Learning (13)
- Lepton colliders (13)
- Engineering, Computer Science and Engineering (12)
- Publication Year
- Publication
-
- Faculty Publications (1140)
- Theses and Dissertations (944)
- Journal of the South Carolina Academy of Science (182)
- Senior Theses (72)
- Publications (22)
-
- Section 5: Imaging at the Nano Scale (8)
- Section 1: Introduction (7)
- Section 3: Imaging the Fast Moving (7)
- Handouts (6)
- Computer Science and Mathematics Faculty Publications (5)
- Section 2: Imaging the Microscopic (4)
- Caravel Undergraduate Research Journal (3)
- Clinical Practice in Athletic Training (3)
- SC Upstate Research Symposium (3)
- Caroliniana Undergraduate Research Journal (1)
- Graduate Student Publications (1)
- Journal of Ideology (1)
- Natural Sciences Faculty Publications (1)
- Section 6: Conclusion (1)
- Publication Type
- File Type
Articles 721 - 750 of 2411
Full-Text Articles in Physical Sciences and Mathematics
Low Exposure Long-Baseline Neutrino Oscillation Sensitivity Of The Dune Experiment, A. Aduszkiewicz, J. Aguilar, Z. Ahmad, B. Aimard, B. Ali-Mohammadzadeh, T. Alion, K. Allison, S. Alonso Monnsalve, M. Alrashed, C. Alt, A. Alton, P. Amedo, J. Anderson, C. Andreopooulos, M. Andreotti, M. P. Andrews, F. Andrianala, S. Andringa, N. Anfimov, Roberto Petti, Sanjib R. Mishra Ph.D., Et. Al.
Low Exposure Long-Baseline Neutrino Oscillation Sensitivity Of The Dune Experiment, A. Aduszkiewicz, J. Aguilar, Z. Ahmad, B. Aimard, B. Ali-Mohammadzadeh, T. Alion, K. Allison, S. Alonso Monnsalve, M. Alrashed, C. Alt, A. Alton, P. Amedo, J. Anderson, C. Andreopooulos, M. Andreotti, M. P. Andrews, F. Andrianala, S. Andringa, N. Anfimov, Roberto Petti, Sanjib R. Mishra Ph.D., Et. Al.
Faculty Publications
The Deep Underground Neutrino Experiment (DUNE) will produce world-leading neutrino oscillation measurements over the lifetime of the experiment. In this work, we explore DUNE’s sensitivity to observe charge-parity violation (CPV) in the neutrino sector, and to resolve the mass ordering, for exposures of up to 100 kiloton-megawatt-calendar years (kt-MW-CY), where calendar years include an assumption of 57% accelerator uptime based on past accelerator performance at Fermilab. The analysis includes detailed uncertainties on the flux prediction, the neutrino interaction model, and detector effects. We demonstrate that DUNE will be able to unambiguously resolve the neutrino mass ordering at a 4𝜎 (5𝜎) …
Measurement Of Structure Dependent Radiative K+ -> E,Sup>(+) Vy Gamma Decays Using Stopped Positive Kaons, H. Ito, A. Kobayashi, S. Bianchin, T. Cao, C. Djalali, D. H. Dongwi, T. Gautam, D. Gill, M. D. Hasinoff, K. Horie, Y. Igarashi, J. Imazato, N. Kalantarians, H. Kawai, S. Kimura, S. Kodama, M. Kohl, H. Lu, O. Mineev, Steffen Strauch, Et. Al.
Measurement Of Structure Dependent Radiative K+ -> E,Sup>(+) Vy Gamma Decays Using Stopped Positive Kaons, H. Ito, A. Kobayashi, S. Bianchin, T. Cao, C. Djalali, D. H. Dongwi, T. Gautam, D. Gill, M. D. Hasinoff, K. Horie, Y. Igarashi, J. Imazato, N. Kalantarians, H. Kawai, S. Kimura, S. Kodama, M. Kohl, H. Lu, O. Mineev, Steffen Strauch, Et. Al.
Faculty Publications
The structure dependent radiative K + → e+νγ (KSD+e2γ) decay was investigated with stopped positive kaons. The e+ momentum spectra containing 574±30 KSD+e2γ events with a K + → μ+ν (Kμ2) background of 28 ± 19 events were measured with and without a photon in coincidence and analyzed with Monte Carlo simulations for acceptance and detector response to extract the ratio of the branching ratio of the KSD+e2γ decay and the K + → e+ν decay including the internal bremsstrahlung process (Ke2(γ )). …
Lakshadweep High Propagation And Impacts On The Somali Current And Eddies During The Southwest Monsoon, Paul A. Ernst, Bulusu Subrahmanyam, Corinne B. Trott
Lakshadweep High Propagation And Impacts On The Somali Current And Eddies During The Southwest Monsoon, Paul A. Ernst, Bulusu Subrahmanyam, Corinne B. Trott
Faculty Publications
Climatological eddies in the Arabian Sea (AS), including the Lakshadweep High (LH) and the Great Whirl (GW), play major roles in the regional fluxes of upper ocean properties. For the first time, we apply an eddy tracking algorithm to the LH using altimetric sea surface height observations from 1993 through 2019. We additionally analyze the LH's water mass composition throughout its life cycle using the 1/12° Global eddy resolving physical ocean and sea ice reanalysis (GLORYS12). We observe that the second annual downwelling coastal Kelvin wave's (CKW) arrival during the winter monsoon is primarily responsible for generating the LH. In …
Determinants Of Covid-19 Vaccinations Among A State-Wide Year-Long Surveillance Initiative In A Conservative Southern State, Lídia Gual-Gonzalez, Maggie S.J. Mccarter, Kyndall Dye-Braumuller, Stella Self, Connor H. Ross, Chloe Rodriguez-Ramos, Virginie G. Daguise, Melissa Nolan Ph.D., Mph
Determinants Of Covid-19 Vaccinations Among A State-Wide Year-Long Surveillance Initiative In A Conservative Southern State, Lídia Gual-Gonzalez, Maggie S.J. Mccarter, Kyndall Dye-Braumuller, Stella Self, Connor H. Ross, Chloe Rodriguez-Ramos, Virginie G. Daguise, Melissa Nolan Ph.D., Mph
Faculty Publications
By the end of 2021, the COVID-19 pandemic resulted in over 54 million cases and more than 800,000 deaths in the United States, and over 350 million cases and more than 5 million deaths worldwide. The uniqueness and gravity of this pandemic have been reflected in the public health guidelines poorly received by a growing subset of the United States population. These poorly received guidelines, including vaccine receipt, are a highly complex psychosocial issue, and have impacted the successful prevention of disease spread. Given the intricate nature of this important barrier, any single statistical analysis methodologically fails to address all …
One Planet: One Health. A Call To Support The Initiative On A Global Science-Policy Body On Chemicals And Waste, Werner Brack, Damia Barcelo Culleres, Alistair B.A. Boxall, Helene Budzinski, Sara Castiglioni, Adrian Covaci, Valeria Dulio, Beate I. Escher, Peter Fantke, Faith Kandie, Despo Fatta-Kassinos, Felix J. Hernandez, Klara Hilscherova, Juliane Hollender, Henner Hollert, Annika Jahnke, Barbara Kasprzyk-Hordern, Stuart J. Khan, Andreas Kortenkamp, Klaus Kuemmerer, Brice Lalonde, Marja H. Lamoree, Yves Levi, Pablo Antonio Lara Martin, Cassiana C. Montagner, Christian Mougin, Titus Msagati, Joerg Oehlmann, Leo Posthuma, Malcolm Reid, Martin Reinhard, Susan D. Richardson, Et. Al.
One Planet: One Health. A Call To Support The Initiative On A Global Science-Policy Body On Chemicals And Waste, Werner Brack, Damia Barcelo Culleres, Alistair B.A. Boxall, Helene Budzinski, Sara Castiglioni, Adrian Covaci, Valeria Dulio, Beate I. Escher, Peter Fantke, Faith Kandie, Despo Fatta-Kassinos, Felix J. Hernandez, Klara Hilscherova, Juliane Hollender, Henner Hollert, Annika Jahnke, Barbara Kasprzyk-Hordern, Stuart J. Khan, Andreas Kortenkamp, Klaus Kuemmerer, Brice Lalonde, Marja H. Lamoree, Yves Levi, Pablo Antonio Lara Martin, Cassiana C. Montagner, Christian Mougin, Titus Msagati, Joerg Oehlmann, Leo Posthuma, Malcolm Reid, Martin Reinhard, Susan D. Richardson, Et. Al.
Faculty Publications
The chemical pollution crisis severely threatens human and environmental health globally. To tackle this challenge the establishment of an overarching international science–policy body has recently been suggested. We strongly support this initiative based on the awareness that humanity has already likely left the safe operating space within planetary boundaries for novel entities including chemical pollution. Immediate action is essential and needs to be informed by sound scientific knowledge and data compiled and critically evaluated by an overarching science–policy interface body. Major challenges for such a body are (i) to foster global knowledge production on exposure, impacts and governance going beyond …
Search For Lepton Flavor Violation In ϒ(3S) → E±Μ∓, J. P. Lees, V. Tisserand, A. Palano, G. Eigen, D. N. Brown, Yu. G. Kolomensky, M. Fritsch, H. Koch, T. Schroeder, R. Cheaib, C. Hearty, T. S. Mattison, J. A. Mckenna, R. Y. So, V. E. Blinov, A. R. Buzykaev, V. P. Druzhinin, V. B. Golubev, E. A. Kozyrev, Milind Purohit, Jeffery R. Wilson, Et. Al.
Search For Lepton Flavor Violation In ϒ(3S) → E±Μ∓, J. P. Lees, V. Tisserand, A. Palano, G. Eigen, D. N. Brown, Yu. G. Kolomensky, M. Fritsch, H. Koch, T. Schroeder, R. Cheaib, C. Hearty, T. S. Mattison, J. A. Mckenna, R. Y. So, V. E. Blinov, A. R. Buzykaev, V. P. Druzhinin, V. B. Golubev, E. A. Kozyrev, Milind Purohit, Jeffery R. Wilson, Et. Al.
Faculty Publications
We report on the first search for electron-muon lepton flavor violation (LFV) in the decay of a b quark and b antiquark bound state. We look for the LFV decay ϒ(3S) → e ± μ∓ in a sample of 118 million ϒ(3S) mesons from 27 fb−1 of data collected with the BABAR detector at the SLAC PEP-II e+e− collider operating with a 10.36 GeV center-of-mass energy. No evidence for a signal is found, and we set a limit on the branching fraction B[ϒ(3S) → e ± μ∓]< 3.6 × 10−7 …
Riding The Wave: Reactive Vector-Borne Disease Policy Renders The United States Vulnerable To Outbreaks And Insecticide Resistance, Kyndall C. Dye-Braumuller, Jennifer R. Gordon, Kaci Mccoy, Danielle Johnson, Rhoel Dinglasan, Melissa Nolan Ph.D., Mph
Riding The Wave: Reactive Vector-Borne Disease Policy Renders The United States Vulnerable To Outbreaks And Insecticide Resistance, Kyndall C. Dye-Braumuller, Jennifer R. Gordon, Kaci Mccoy, Danielle Johnson, Rhoel Dinglasan, Melissa Nolan Ph.D., Mph
Faculty Publications
Funding for vector-borne disease surveillance, management, and research is cyclical and reactive in the United States. The subsequent effects have yielded gross inequities nationally that unintentionally support recurrent outbreaks. This policy forum is comprised of four primary subsections that collectively identify specific areas for improvement and offer innovative solutions to address national inadequacies in vector borne disease policy and infrastructure.
Neighborhood Deprivation And Risk Of Mortality Among Men With Prostate Cancer: Findings From A Long-Term Follow-Up Study, Madhav K.C., Ariane L. Rung, Edward J. Trapido, Laura S. Rozek, Elizabeth T.H. Fontham, Jeannette T. Bensen, Laura Farnan, Susan E. Steck Phd, Mph, Rd, Lixin Song, James L. Mohler, Edward S. Peters
Neighborhood Deprivation And Risk Of Mortality Among Men With Prostate Cancer: Findings From A Long-Term Follow-Up Study, Madhav K.C., Ariane L. Rung, Edward J. Trapido, Laura S. Rozek, Elizabeth T.H. Fontham, Jeannette T. Bensen, Laura Farnan, Susan E. Steck Phd, Mph, Rd, Lixin Song, James L. Mohler, Edward S. Peters
Faculty Publications
Background The overall survival rate of prostate cancer (PCa) has improved over the past decades. However, huge socioeconomic and racial disparities in overall and prostate cancer-specific mortality exist. The neighborhood-level factors including socioeconomic disadvantage and lack of access to care may contribute to disparities in cancer mortality. This study examines the impact of neighborhood deprivation on mortality among PCa survivors. Methods North Carolina–Louisiana Prostate Cancer Project (PCaP) data were used. A total of 2113 men, 1046 AA and 1067 EA, with PCa were included in the analysis. Neighborhood deprivation was measured by the Area Deprivation Index (ADI) at the census …
Virtual Experiments In Astrophysics, Chris Fragile
Virtual Experiments In Astrophysics, Chris Fragile
Journal of the South Carolina Academy of Science
No abstract provided.
Intramolecular Friedel-Crafts Addition Of Indoles To Tertiary Allylic Alcohols, Bryan H. Wakefield, Romie Barnes, Traeannah Brown, Ashley M. Jones, Victoria A. Knotts, Christina Martinetti
Intramolecular Friedel-Crafts Addition Of Indoles To Tertiary Allylic Alcohols, Bryan H. Wakefield, Romie Barnes, Traeannah Brown, Ashley M. Jones, Victoria A. Knotts, Christina Martinetti
Journal of the South Carolina Academy of Science
An intermolecular Friedel-Crafts alkylation of indole and tertiary allylic alcohols has been developed. The allylic alcohols were synthesized using a two-step procedure, then exposure of these alcohols to diphenyl phosphate facilitated the desired annulation reaction. This reaction tolerated a variety of indole substitutions to yield 1H,2H,3H,4H-pyrido[1,2-a]indoles.
Women In Stem Fellowship: An Intersectional And Interdisciplinary Approach To Advancing Inclusion In The Sciences, Ina C. Seethaler, Gabriela Perez-Alvarado
Women In Stem Fellowship: An Intersectional And Interdisciplinary Approach To Advancing Inclusion In The Sciences, Ina C. Seethaler, Gabriela Perez-Alvarado
Journal of the South Carolina Academy of Science
At our university, women-identified individuals make up 23% of students in STEM fields; less than 15% of them graduate with a STEM degree. Nationally, more than 40% of women who enter a STEM job leave it within fewer than ten years. Gendered issues within STEM industries have been identified, yet we are far from equal opportunities for all genders. In 2018, we—the director of Women’s and Gender Studies (WGS) with colleagues in Math, Computing Sciences, and Chemistry—received a $45,000 grant to create a “Women in STEM Fellowship.” The inclusion of WGS made the fellowship interdisciplinary, intersectional, and informed our decision-making …
Teaching The “Wicked” In Geography: Educational Structure, Standards, And Teacher Training As Obstacles To Teaching About Climate Change, Jerry T. Mitchell
Teaching The “Wicked” In Geography: Educational Structure, Standards, And Teacher Training As Obstacles To Teaching About Climate Change, Jerry T. Mitchell
Journal of the South Carolina Academy of Science
No abstract provided.
Iseeq: Information Seeking Question Generation Using Dynamic Meta-Information Retrieval And Knowledge Graphs, Manas Gaur, Kalpa Gunaratna, Vijay Srinivasan, Hongxia Jin
Iseeq: Information Seeking Question Generation Using Dynamic Meta-Information Retrieval And Knowledge Graphs, Manas Gaur, Kalpa Gunaratna, Vijay Srinivasan, Hongxia Jin
Publications
Conversational Information Seeking (CIS) is a relatively new research area within conversational AI that attempts to seek information from end-users in order to understand and satisfy users’ needs. If realized, such a system has far-reaching benefits in the real world; for example, a CIS system can assist clinicians in pre-screening or triaging patients in healthcare. A key open sub-problem in CIS that remains unaddressed in the literature is generating Information Seeking Questions (ISQs) based on a short initial query from the end user. To address this open problem, we propose Information SEEking Question generator (ISEEQ), a novel approach for generating …
Diet Quality Scores And Cardiometabolic Risk Factors In Mexican Children And Adolescents: A Longitudinal Analysis, Abeer Ali Aljahdali, Karen E. Peterson, Alejandra Cantoral, Edward Ruiz-Narvaez, Martha M. Tellez-Rojo, Hyungjin Myra Kim, James R. Hébert Scd, Michael David Wirth Msph, Phd, Face, Libni A. Torres-Olascoaga, Nitin Shivappa Mbbs, Mph, Ph.D., Ana Baylin
Diet Quality Scores And Cardiometabolic Risk Factors In Mexican Children And Adolescents: A Longitudinal Analysis, Abeer Ali Aljahdali, Karen E. Peterson, Alejandra Cantoral, Edward Ruiz-Narvaez, Martha M. Tellez-Rojo, Hyungjin Myra Kim, James R. Hébert Scd, Michael David Wirth Msph, Phd, Face, Libni A. Torres-Olascoaga, Nitin Shivappa Mbbs, Mph, Ph.D., Ana Baylin
Faculty Publications
There is limited evidence for the effects of diet on cardiometabolic profiles during the pubertal transition. We collected repeated measures of diet quality and cardiometabolic risk factors among Mexican youth. This analysis included 574 offspring of the Early Life Exposure in Mexico to Environmental Toxicants (ELEMENT) birth cohort followed up to three time points. Dietary Approaches to Stop Hypertension (DASH), alternate Mediterranean Diet (aMedDiet), and Children’s Dietary Inflammatory Index (C-DIITM) scores were computed from food frequency questionnaires. Higher DASH and aMedDiet scores reflect a higher diet quality, and lower C-DII scores reflect an anti-inflammatory diet. Cardiometabolic risk factors …
Patients With Obesity And A History Of Metformin Treatment Have Lower Influenza Mortality: A Retrospective Cohort Study, Tammy H. Cummings, Joseph Magagnoli Ph.D., Ms, James W. Hardin, S. Scott Sutton
Patients With Obesity And A History Of Metformin Treatment Have Lower Influenza Mortality: A Retrospective Cohort Study, Tammy H. Cummings, Joseph Magagnoli Ph.D., Ms, James W. Hardin, S. Scott Sutton
Faculty Publications
Background: Obesity is a risk factor for the development of influenza by leading to a chronic inflammatory state and T-cell dysfunction. Based upon preclinical research, metformin has influenza activity by restoring T-cell function and improving the immune response. Objective: We aimed to evaluate the potential drug repurposing of metformin for the management of influenza among patients with obesity utilizing national claims data in an electronic health record database. Methods: The VA Informatics and Computing Infrastructure (VINCI) was utilized to obtain individual-level information on demographics, administrative claims, and pharmacy dispensation. A cohort was created among individuals with laboratory confirmed diagnosis of …
Amorphization Of Pseudocapacitive T−Nb2O5 Accelerates Lithium Diffusivity As Revealed Using Tunable Isomorphic Architectures, Wessel Van Den Bergh, Sean Wechsler, Hasala Nadeesini Lokupitiya, Lauren Jarocha, Kwangnam Kim, James Chapman, Kyoung E. Kweon, Brandon C. Wood, Steve Heald, Morgan Stefik Phd
Amorphization Of Pseudocapacitive T−Nb2O5 Accelerates Lithium Diffusivity As Revealed Using Tunable Isomorphic Architectures, Wessel Van Den Bergh, Sean Wechsler, Hasala Nadeesini Lokupitiya, Lauren Jarocha, Kwangnam Kim, James Chapman, Kyoung E. Kweon, Brandon C. Wood, Steve Heald, Morgan Stefik Phd
Faculty Publications
Intercalationpseudocapacitancecan combinecapacitor-likepower densitieswith battery-likeenergy densities.Such surface-limitedbehaviorrequiresrapid diffusionwhere amorphizationcan increasesolid-statediffusivity.Here intercalationpseudoca-pacitivematerialswith tailoredextentsof amorphizationin T-Nb2O5are first reported.Amorphizationwas characterizedwithWAXS, XPS, XAFS, and EPR which suggesteda peroxide-rich(O22) surface that was consistentwith DFT predictions.A seriesof tunableisomorphicarchitecturesenabledcomparisonswhileindependentlyvaryingtransportparameters.Throughprocessof elimination,solid-statelithium diffusionwas identifiedas thedominantdiffusive-constraintdictatingthe maximumvoltagesweep rate for surface-limitedkinetics(vSLT), termed the Surface-LimitedThreshold(SLT). ThevSLTincreasedwith amorphizationhoweverstable cycling requiredcrystallineT-Nb2O5. A current-responsemodel using series-impedanceswell-matchedtheseobservations.This perspectiverevealedthat amorphizationof T-Nb2O5enhancedsolid-statediffusionby 12.2% and increasedsurface-limitationsby 17.0% (stablesamples).This approachenabledretaining95% lithiationcapacityat ~800mVs1(1,600C-rate equivalent).
Multidimensional, High Precision Measurements Of Beam Single Spin Asymmetries In Semi-Inclusive Pi+ Electroproduction Off Protons In The Valence Region, S. Diehl, A. Kim, G. Angelini, K. Joo, S. Adhikari, M. Amaryan, M. Arratia, H. Atac, H. Avakian, C. Ayerbe Gayoso, N. A. Baltzell, L. Barion, S. Bastami, M. Battaglieri, I. Bedlinskiy, F. Benmokhtar, A. Bianconi, A. S. Biselli, M. Bondi, F. Bossù, Steffen Strauch, Et. Al.
Multidimensional, High Precision Measurements Of Beam Single Spin Asymmetries In Semi-Inclusive Pi+ Electroproduction Off Protons In The Valence Region, S. Diehl, A. Kim, G. Angelini, K. Joo, S. Adhikari, M. Amaryan, M. Arratia, H. Atac, H. Avakian, C. Ayerbe Gayoso, N. A. Baltzell, L. Barion, S. Bastami, M. Battaglieri, I. Bedlinskiy, F. Benmokhtar, A. Bianconi, A. S. Biselli, M. Bondi, F. Bossù, Steffen Strauch, Et. Al.
Faculty Publications
High precision measurements of the polarized electron beam-spin asymmetry in semi-inclusive deep inelastic scattering (SIDIS) from the proton have been performed using a 10.6 GeV incident electron beam and the CLAS12 spectrometer at Jefferson Lab. We report here a high precision multidimensional study of single πþ SIDIS data over a large kinematic range in Bjorken x, fractional energy, and transverse momentum of the hadron as well as photon virtualities Q2 ranging from 1–7 GeV2. In particular, the structure function ratio sinϕ LU/ FUU has been determined, where sinϕ LU is a twist-3 quantity that …
Measurement Of The Nucleon F N2 / F P2 Tructure Function Ratio By The Jefferson Lab Marathon Tritium/Helium-3 Deep Inelastic Scattering Experiment, D. Abrams, H. Albataineh, B. S. Aljawrneh, S. Alsalmi, D. Androic, K. Aniol, W. Armstrong, J. Arrington, H. Atac, T. Averett, C. Ayerbe Gayoso, X. Bai, J. Bane, S. Barcus, A. Beck, V. Bellini, H. Bhatt, D. Bhetuwal, D. Biswas, D. Blyth, Roberto Petti, Et. Al.
Measurement Of The Nucleon F N2 / F P2 Tructure Function Ratio By The Jefferson Lab Marathon Tritium/Helium-3 Deep Inelastic Scattering Experiment, D. Abrams, H. Albataineh, B. S. Aljawrneh, S. Alsalmi, D. Androic, K. Aniol, W. Armstrong, J. Arrington, H. Atac, T. Averett, C. Ayerbe Gayoso, X. Bai, J. Bane, S. Barcus, A. Beck, V. Bellini, H. Bhatt, D. Bhetuwal, D. Biswas, D. Blyth, Roberto Petti, Et. Al.
Faculty Publications
The ratio of the nucleon F2 structure functions, F n2 / F p2 is determined by the MARATHON experiment from measurements of deep inelastic scattering of electrons from 3H and 3He nuclei. The experiment was performed in the Hall A Facility of Jefferson Lab using two high-resolution spectrometers for electron detection, and a cryogenic target system which included a low-activity tritium cell. The data analysis used a novel technique exploiting the mirror symmetry of the two nuclei, which essentially eliminates many theoretical uncertainties in the extraction of the ratio. The results, which cover the Bjorken …
Diet Quality And Dietary Inflammatory Index Score Among Women’S Cancer Survivors, Sibylle Kranz, Faten Hasan, Erin Kennedy, Jamie Zoellner, Kristin A. Guertin, Nitin Shivappa Mbbs, Mph, Ph.D., James R. Hébert, Roger Anderson, Wendy Cohn
Diet Quality And Dietary Inflammatory Index Score Among Women’S Cancer Survivors, Sibylle Kranz, Faten Hasan, Erin Kennedy, Jamie Zoellner, Kristin A. Guertin, Nitin Shivappa Mbbs, Mph, Ph.D., James R. Hébert, Roger Anderson, Wendy Cohn
Faculty Publications
The purpose of this study was to investigate Healthy Eating Index 2015 (HEI-2015) and Energy-Adjusted Dietary Inflammatory Index (E-DIITM) scores in women's cancer survivors and to examine socio-economic (SES) characteristics associated with these two diet indices. In this cross-sectional study, survivors of women's cancers completed a demographic questionnaire and up to three 24-h dietary recalls. HEI-2015 and E-DII scores were calculated from average intakes. One-way ANOVA was used to examine the association of various demographic factors on HEI-2015 and E-DII scores. Pearson Correlation was used to calculate the correlation between the two scores. The average HEI-2015 score was 55.0 +/- …
Hippocampal Ensembles Represent Sequential Relationships Among An Extended Sequence Of Nonspatial Events, Babak Shahbaba, Lingge Li, Forest Agostinelli, Mansi Saraf, Keiland W. Cooper, Derenik Haghverdian, Gabriel A. Elias, Pierre Baldi, Norbert J. Fortin
Hippocampal Ensembles Represent Sequential Relationships Among An Extended Sequence Of Nonspatial Events, Babak Shahbaba, Lingge Li, Forest Agostinelli, Mansi Saraf, Keiland W. Cooper, Derenik Haghverdian, Gabriel A. Elias, Pierre Baldi, Norbert J. Fortin
Faculty Publications
The hippocampus is critical to the temporal organization of our experiences. Although this fundamental capacity is conserved across modalities and species, its underlying neuronal mechanisms remain unclear. Here we recorded hippocampal activity as rats remembered an extended sequence of nonspatial events unfolding over several seconds, as in daily life episodes in humans. We then developed statistical machine learning methods to analyze the ensemble activity and discovered forms of sequential organization and coding important for order memory judgments. Specifically, we found that hippocampal ensembles provide significant temporal coding throughout nonspatial event sequences, differentiate distinct types of task-critical information sequentially within events, …
Transmodel: An R Package For Linear Transformation Model With Censored Data, Jie Zhou, Jiajia Zhang Ph.D.
Transmodel: An R Package For Linear Transformation Model With Censored Data, Jie Zhou, Jiajia Zhang Ph.D.
Faculty Publications
Linear transformation models, including the proportional hazards model and proportional odds model, under right censoring were discussed by Chen, Jin, and Ying (2002). The asymptotic variance of the estimator they proposed has a closed form and can be obtained easily by plug-in rules, which improves the computational efficiency. We develop an R package TransModel based on Chen's approach. The detailed usage of the package is discussed, and the function is applied to the Veterans' Administration lung cancer data.
Concurrent Identification And Characterization Of Protein Structure And Continuous Internal Dynamics With Redcraft, Hanin Omar, Aaron Hein, Casey A. Cole, Homayoun Valafar
Concurrent Identification And Characterization Of Protein Structure And Continuous Internal Dynamics With Redcraft, Hanin Omar, Aaron Hein, Casey A. Cole, Homayoun Valafar
Faculty Publications
Internal dynamics of proteins can play a critical role in the biological function of some proteins. Several well documented instances have been reported such as MBP, DHFR, hTS, DGCR8, and NSP1 of the SARS-CoV family of viruses. Despite the importance of internal dynamics of proteins, there currently are very few approaches that allow for meaningful separation of internal dynamics from structural aspects using experimental data. Here we present a computational approach named REDCRAFT that allows for concurrent characterization of protein structure and dynamics. Here, we have subjected DHFR (PDB-ID 1RX2), a 159-residue protein, to a fictitious, mixed mode model of …
Comparison Of Human Urinary Exosomes Isolated Via Ultracentrifugation Alone Versus Ultracentrifugation Followed By Sec Column-Purification, Kun Huang, Sudha Garimella, Alyssa Clay-Gilmour, Lucia Vojtech, Bridget Armstrong, Madison Bessonny, Alexis Stamatikos
Comparison Of Human Urinary Exosomes Isolated Via Ultracentrifugation Alone Versus Ultracentrifugation Followed By Sec Column-Purification, Kun Huang, Sudha Garimella, Alyssa Clay-Gilmour, Lucia Vojtech, Bridget Armstrong, Madison Bessonny, Alexis Stamatikos
Faculty Publications
Chronic kidney disease is a progressive, incurable condition that involves a gradual loss of kidney function. While there are no non-invasive biomarkers available to determine whether individuals are susceptible to developing chronic kidney disease, small RNAs within urinary exosomes have recently emerged as a potential candidate to use for assessing renal function. Ultracentrifugation is the gold standard for urinary exosome isolation. However, extravesicular small RNA contamination can occur when isolating exosomes from biological fluids using ultracentrifugation, which may lead to misidentifying the presence of certain small RNA species in human urinary exosomes. Therefore, we characterized human urinary exosomal preparations isolated …
Reply To Comment: Controls On Turnover Of Marine Dissolved Organic Matter-Testing The Null Hypothesis Of Purely Concentration-Driven Uptake, Yuan Shen, Ronald Benner
Reply To Comment: Controls On Turnover Of Marine Dissolved Organic Matter-Testing The Null Hypothesis Of Purely Concentration-Driven Uptake, Yuan Shen, Ronald Benner
Faculty Publications
Our recent bioassay experiments indicate that molecular properties are a primary control on the microbial utilization of dissolved organic matter in the ocean. This finding is questioned by Lennartz and Dittmar who modeled our experiments and concluded that our observations could be largely explained by concentration-driven uptake independent from molecular properties. We suggest the authors' models are deficient for establishing the relative roles of molecular properties and concentration-driven uptake. Our conclusion is consistent with earlier and recent experimental results and biogeochemical observations, supporting a unified theory with molecular properties as a more prominent control than concentration-driven uptake on marine organic …
Search For Single Top-Quark Production Via Flavour-Changing Neutral Currents At 8 Tev With The Atlas Detector (Vol 76, 55, 2016), G. Aad, B. Abbott, J. Abdallah, O. Abdinov, R. Aben, M. Abolins, O.S. Abouzeid, H. Abramowicz, H. Abreu, R. Abreu, Y. Abulaiti, B.S. Acharya, L. Adamczyk, D.L. Adams, J. Adelman, S. Adomeit, T. Adye, A. A. Affolder, T. Agatonovic-Jovin, J. Agricola, Milind Purohit
Search For Single Top-Quark Production Via Flavour-Changing Neutral Currents At 8 Tev With The Atlas Detector (Vol 76, 55, 2016), G. Aad, B. Abbott, J. Abdallah, O. Abdinov, R. Aben, M. Abolins, O.S. Abouzeid, H. Abramowicz, H. Abreu, R. Abreu, Y. Abulaiti, B.S. Acharya, L. Adamczyk, D.L. Adams, J. Adelman, S. Adomeit, T. Adye, A. A. Affolder, T. Agatonovic-Jovin, J. Agricola, Milind Purohit
Faculty Publications
No abstract provided.
Scanner: A Web Platform For Annotation, Visualization And Sharing Of Single Cell Rna-Seq Data, Guoshuai Cai, Xuanxuan Yu, Choonhan Youn, Jun Zhou, Feifei Xiao
Scanner: A Web Platform For Annotation, Visualization And Sharing Of Single Cell Rna-Seq Data, Guoshuai Cai, Xuanxuan Yu, Choonhan Youn, Jun Zhou, Feifei Xiao
Faculty Publications
In recent years, efficient scRNA-seq methods have been developed, enabling the transcriptome profiling of single cells massively in parallel. Meanwhile, its high dimensionality and complexity bring challenges to the data analysis and require extensive collaborations between biologists and bioinformaticians and/or biostatisticians. The communication between these two units demands a platform for easy data sharing and exploration. Here we developed Single-Cell Transcriptomics Annotated Viewer (SCANNER), as a public web resource for the scientific community, for sharing and analyzing scRNA-seq data in a collaborative manner. It is easy-to-use without requiring special software or extensive coding skills. Moreover, it equipped a real-time database …
Self-Relabeling For Noise-Tolerant Retina Vessel Segmentation Through Label Reliability Estimation, Jiacheng Li, Ruirui Li, Ruize Han, Song Wang
Self-Relabeling For Noise-Tolerant Retina Vessel Segmentation Through Label Reliability Estimation, Jiacheng Li, Ruirui Li, Ruize Han, Song Wang
Faculty Publications
Background Retinal vessel segmentation benefits significantly from deep learning. Its performance relies on sufficient training images with accurate ground-truth segmentation, which are usually manually annotated in the form of binary pixel-wise label maps. Manually annotated ground-truth label maps, more or less, contain errors for part of the pixels. Due to the thin structure of retina vessels, such errors are more frequent and serious in manual annotations, which negatively affect deep learning performance.
Methods In this paper, we develop a new method to automatically and iteratively identify and correct such noisy segmentation labels in the process of network training. We consider …
Search For Darkonium In E+ E− Collisions, J. P. Lees, V. Poireau, V. Tisserand, E. Grauges, A. Palano, G. Eigen, D. N. Brown, Yu. G. Kolomensky, M. Fritsch, H. Koch, T. Schroeder, R. Cheaib, C. Hearty, T. S. Mattison, J. A. Mckenna, R. Y. So, V. E. Blinov, A. R. Buzykaev, Milind Purohit, Et. Al.
Search For Darkonium In E+ E− Collisions, J. P. Lees, V. Poireau, V. Tisserand, E. Grauges, A. Palano, G. Eigen, D. N. Brown, Yu. G. Kolomensky, M. Fritsch, H. Koch, T. Schroeder, R. Cheaib, C. Hearty, T. S. Mattison, J. A. Mckenna, R. Y. So, V. E. Blinov, A. R. Buzykaev, Milind Purohit, Et. Al.
Faculty Publications
Collider searches for dark sectors, new particles interacting only feebly with ordinary matter, have largely focused on identifying signatures of new mediators, leaving much of dark sector structures unexplored. In particular, the existence of dark matter bound states (darkonia) remains to be investigated. This possibility could arise in a simple model in which a dark photon (A') is light enough to generate an attractive force between dark fermions. We report herein a search for a JPC ¼ 1−− darkonium state, the ϒD, produced in the reaction e+e− → γϒD, ϒD → A …
Measurements Of The Electron-Helicity Asymmetry In The Quasi-Elastic A ((E) Over Right Arrow, E' O) Process, T. Kolar, S. J. Paul, P. Achenbach, H. Arenhoevel, A. Ashkenazi, J. Beričič, R. Böhm, D. Bosnar, T. Brecelj, E. Cline, E. O. Cohen, M. O. Distler, A. Esser, I. Friščić, R. Gilman, C. Giusti, M. Heilig, M. Hoek, D, Izraeli, Steffen Strauch, Et. Al.
Measurements Of The Electron-Helicity Asymmetry In The Quasi-Elastic A ((E) Over Right Arrow, E' O) Process, T. Kolar, S. J. Paul, P. Achenbach, H. Arenhoevel, A. Ashkenazi, J. Beričič, R. Böhm, D. Bosnar, T. Brecelj, E. Cline, E. O. Cohen, M. O. Distler, A. Esser, I. Friščić, R. Gilman, C. Giusti, M. Heilig, M. Hoek, D, Izraeli, Steffen Strauch, Et. Al.
Faculty Publications
We present measurements of the electron helicity asymmetry in quasi-elastic proton knockout from 2H and 12C nuclei by polarized electrons. This asymmetry depends on the fifth structure function, is antisymmetric with respect to the scattering plane, and vanishes in the absence of final-state interactions, and thus it provides a sensitive tool for their study. Our kinematics cover the full range in off-coplanarity angle θpq, with a polar angle θpq coverage up to about 8◦. The missing energy resolution enabled us to determine the asymmetries for knock-out resulting in different states of the residual …
The Isocaloric Substitution Of Plant-Based And Animal-Based Protein In Relation To Aging-Related Health Outcomes: A Systematic Review, Jiali Zheng, Tianren Zhu, Guanghuan Yang, Longgang Zhao, Fangyu Li, Yong-Moon Park, Fred K. Tabung, Susan E. Steck Phd, Mph, Rd, Xiaoguang Li, Hui Wang
The Isocaloric Substitution Of Plant-Based And Animal-Based Protein In Relation To Aging-Related Health Outcomes: A Systematic Review, Jiali Zheng, Tianren Zhu, Guanghuan Yang, Longgang Zhao, Fangyu Li, Yong-Moon Park, Fred K. Tabung, Susan E. Steck Phd, Mph, Rd, Xiaoguang Li, Hui Wang
Faculty Publications
Plant-based and animal-based protein intake have differential effects on various aging-related health outcomes, but less is known about the health effect of isocaloric substitution of plant-based and animal-based protein. This systematic review summarized current evidence of the isocaloric substitutional effect of plant-based and animal-based protein on aging-related health outcomes. PubMed and Embase databases were searched for epidemiologic observational studies published in English up to 15 March 2021. Studies that included adults ≥18 years old; use of a nutritional substitution model to define isocaloric substitution of plant protein and animal protein; health outcomes covering mortality, aging-related diseases or indices; and reported …