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Full-Text Articles in Physical Sciences and Mathematics

Table Of Contents May 2024

Table Of Contents

Journal of the South Carolina Academy of Science

No abstract provided.


Maternal Care Utilization And Provision During The Covid-19 Pandemic: Voices From Minoritized Pregnant And Postpartum Women And Maternal Care Providers In Deep South, Ran Zhang, Tiffany Byrd, Shan Qiao Ph.D., Myriam E. Torres Phd, Msph, Xiaoming Li Ph.D., Jihong Liu Sc.D. Apr 2024

Maternal Care Utilization And Provision During The Covid-19 Pandemic: Voices From Minoritized Pregnant And Postpartum Women And Maternal Care Providers In Deep South, Ran Zhang, Tiffany Byrd, Shan Qiao Ph.D., Myriam E. Torres Phd, Msph, Xiaoming Li Ph.D., Jihong Liu Sc.D.

Faculty Publications

Background

The COVID-19 pandemic has significantly affected maternal care services especially for minoritized individuals, creating challenges for both service users (i.e., African American and Hispanic pregnant/postpartum women) and maternal care providers (MCPs). Guided by a socioecological framework, this study aims to investigate the experiences of African American and Hispanic pregnant and postpartum women, as well as MCPs, in accessing and providing maternal care services during the COVID-19 pandemic in the Deep South.

Methods


We conducted semi-structured interviews with 19 African American women, 20 Hispanic women, and 9 MCPs between January and August 2022. Participants were recruited from Obstetrics and Gynecology …


Structural Homology Of Mite Profilins To Plant Profilins Is Not Indicative Of Allergic Cross-Reactivity, Andrea O'Malley, Sahana Sankaran, Avery Carriuolo, Kriti Khatri, Krzysztof Kowal, Maksymilian Chruszcz Ph.D. Apr 2024

Structural Homology Of Mite Profilins To Plant Profilins Is Not Indicative Of Allergic Cross-Reactivity, Andrea O'Malley, Sahana Sankaran, Avery Carriuolo, Kriti Khatri, Krzysztof Kowal, Maksymilian Chruszcz Ph.D.

Faculty Publications

Structural and allergenic characterization of mite profilins has not been previously pursued to a similar extent as plant profilins. Here, we describe structures of profilins originating from Tyrophagus putrescentiae (registered allergen Tyr p 36.0101) and Dermatophagoides pteronyssinus (here termed Der p profilin), which are the first structures of profilins from Arachnida. Additionally, the thermal stabilities of mite and plant profilins are compared, suggesting that the high number of cysteine residues in mite profilins may play a role in their increased stability. We also examine the cross-reactivity of plant and mite profilins as well as investigate the relevance of these profilins …


Identifying Multilevel Predictors Of Behavioral Outcomes Like Park Use: A Comparison Of Conditional And Marginal Modeling Approaches, Marilyn E. Wende, S. Morgan Hughey, Alexander C. Mclain, Shirelle Hallum, J. Aaron Hipp, Jasper Schipperijn, Ellen W. Stowe, Andrew T. Kaczynski Ph.D. Apr 2024

Identifying Multilevel Predictors Of Behavioral Outcomes Like Park Use: A Comparison Of Conditional And Marginal Modeling Approaches, Marilyn E. Wende, S. Morgan Hughey, Alexander C. Mclain, Shirelle Hallum, J. Aaron Hipp, Jasper Schipperijn, Ellen W. Stowe, Andrew T. Kaczynski Ph.D.

Faculty Publications

This study compared marginal and conditional modeling approaches for identifying individual, park and neighborhood park use predictors. Data were derived from the ParkIndex study, which occurred in 128 block groups in Brooklyn (New York), Seattle (Washington), Raleigh (North Carolina), and Greenville (South Carolina). Survey respondents (n = 320) indicated parks within one half-mile of their block group used within the past month. Parks (n = 263) were audited using the Community Park Audit Tool. Measures were collected at the individual (park visitation, physical activity, sociodemographic characteristics), park (distance, quality, size), and block group (park count, population density, age structure, racial …


Cpm-8 Europa Unveiled: A Multi-Wavelength Analysis, Trinity A. Ward, Michelle Deady Apr 2024

Cpm-8 Europa Unveiled: A Multi-Wavelength Analysis, Trinity A. Ward, Michelle Deady

SC Upstate Research Symposium

This study is an analysis of the compositional structure of Jupiter’s icy moon, Europa, by utilizing multi-wavelength spectroscopy. The objective of this study is to enhance our understanding of Europa’s compositional and potential biological characteristics.

Spectral data was obtained from various space missions and instruments. We are looking at imaging and spectroscopy-focused instruments RALPH, LORRI, LEISA, ALICE, and MVIC which were all part of the New Horizons spacecraft that launched in 2006. The data collected was from the Jupiter fly-by in February-March 2007.

This project sets the tone for the year with the upcoming Europa Clipper mission by NASA, set …


Hgs-3 The Influence Of A Tandem Cycling Program In The Community On Physical And Functional Health, Therapeutic Bonds, And Quality Of Life For Individuals And Care Partners Coping With Parkinson’S Disease, Leila Djerdjour, Jennifer L. Trilk Apr 2024

Hgs-3 The Influence Of A Tandem Cycling Program In The Community On Physical And Functional Health, Therapeutic Bonds, And Quality Of Life For Individuals And Care Partners Coping With Parkinson’S Disease, Leila Djerdjour, Jennifer L. Trilk

SC Upstate Research Symposium

Purpose Statement: Several studies have shown that aerobic exercise can have a positive impact on alleviating symptoms experienced by individuals with Parkinson's disease (PD). Despite this evidence, the potential benefits of exercise for both PD patients and their care partners (PD dyad) remain unexplored. This research project investigates the effectiveness, therapeutic collaborations, and physical outcomes of a virtual reality (VR) tandem cycling program specifically designed for PD dyads.

Methods: Following approval from the Prisma Health Institutional Review Board, individuals with PD were identified and screened by clinical neurologists. The pre-testing measures for PD dyads (N=9) included emotional and cognitive status …


Identifying A Group Of Factors Predicting Cognitive Impairment Among Older Adults, Longgang Zhao, Yuan Wang, Eric Mishio Bawa, Zichun Meng, Jingkai Wei, Sarah Newman-Norlund, Tushar Trivedi, Hatice Hasturk, Roger Newman-Norlund, Julius Fridriksson Ph.D., Anwar T. Nerchant Apr 2024

Identifying A Group Of Factors Predicting Cognitive Impairment Among Older Adults, Longgang Zhao, Yuan Wang, Eric Mishio Bawa, Zichun Meng, Jingkai Wei, Sarah Newman-Norlund, Tushar Trivedi, Hatice Hasturk, Roger Newman-Norlund, Julius Fridriksson Ph.D., Anwar T. Nerchant

Faculty Publications

Background

Cognitive impairment has multiple risk factors spanning several domains, but few studies have evaluated risk factor clusters. We aimed to identify naturally occurring clusters of risk factors of poor cognition among middle-aged and older adults and evaluate associations between measures of cognition and these risk factor clusters.

Methods

We used data from the National Health and Nutrition Examination Survey (NHANES) III (training dataset, n = 4074) and the NHANES 2011–2014 (validation dataset, n = 2510). Risk factors were selected based on the literature. We used both traditional logistic models and support vector machine methods to construct a composite score …


Broad-Spectrum Lignin-Based Adhesives Using Thiol–Silyl Ether Crosslinkers, Yishayah Bension, Siteng Zhang, Tristan Menninger, Ting Ge, Chuanbing Tang Apr 2024

Broad-Spectrum Lignin-Based Adhesives Using Thiol–Silyl Ether Crosslinkers, Yishayah Bension, Siteng Zhang, Tristan Menninger, Ting Ge, Chuanbing Tang

Faculty Publications

Lignin is a renewable feedstock that is abundant and inexpensive but still presents challenges for its valorization. In this work, we converted functionalized lignin into broad-spectrum adhesives using thiol–silyl ether crosslinkers. The curing behavior of adhesives was investigated via rheology of their resin forms. These materials exhibit good adhesion on diverse substrates, including wood, glass, steel, aluminium, carbon fiber, and different plastics, with the most adhesion strength in the range of 1–3 MPa. These adhesives were also explored for applications, ranging from wet conditions to different mechanically responsive materials. The mechanism of adhesion was further examined to understand the bonding …


Associations Between Sleep Duration, Sleep Disturbance And Cardiovascular Disease Biomarkers Among Adults In The United States, Prince Nii Ossah Addo, Paddington T. Mundagowa, Longgang Zhao, Mufaro Kanyangarara, Monique J. Brown Ph.D., Mph, Jihong Liu Sc.D. Apr 2024

Associations Between Sleep Duration, Sleep Disturbance And Cardiovascular Disease Biomarkers Among Adults In The United States, Prince Nii Ossah Addo, Paddington T. Mundagowa, Longgang Zhao, Mufaro Kanyangarara, Monique J. Brown Ph.D., Mph, Jihong Liu Sc.D.

Faculty Publications

Background

Sleep problems are associated with abnormal cardiovascular biomarkers and an increased risk of cardiovascular diseases (CVDs). However, studies investigating associations between sleep problems and CVD biomarkers have reported conflicting findings. This study examined the associations between sleep problems and CVD biomarkers in the United States.

Methods

Data were from the National Health and Nutrition Examination Survey (NHANES) (2007–2018) and analyses were restricted to adults ≥ 20 years (n = 23,749). CVD biomarkers [C-reactive Protein (CRP), low-density lipoproteins, high-density lipoproteins (HDL), triglycerides, insulin, glycosylated hemoglobin (HbA1c), and fasting blood glucose] were categorized as abnormal or normal using standardized cut-off …


Lyraquist: Language Learning Via Music App, Vivian D'Souza, Siri Avula, Mahi Patel, Tanvi Singh, Ashley Bickham Apr 2024

Lyraquist: Language Learning Via Music App, Vivian D'Souza, Siri Avula, Mahi Patel, Tanvi Singh, Ashley Bickham

Senior Theses

Lyraquist is a new language learning mobile app that encourages the practice of a foreign language through music. Language learners can connect their Spotify Premium account to Lyraquist to listen to music in their target languages and utilize tools such as translation and vocabulary lists to facilitate language practice. Through integration with Spotify, users can import and create Spotify playlists and search the service’s entire catalog. By combining daily listening habits with several tasks associated with language learning in one place, Lyraquist hopes to be a useful language learning tool.


Elevating Academic Administration: A Comprehensive Faculty Dashboard For Tracking Student Evaluations And Research, Musa M. Azeem Apr 2024

Elevating Academic Administration: A Comprehensive Faculty Dashboard For Tracking Student Evaluations And Research, Musa M. Azeem

Senior Theses

The USC Faculty Dashboard is a web application designed to revolutionize how department heads, professors, and instructors monitor progress and make decisions, providing a centralized hub for efficient data storage and analysis. Currently, there’s a gap in tools tailored for department heads to concisely manage the performance of their department, which our platform aims to fill. The USC Faculty Dashboard offers easy access to upload and view student evaluation and research information, empowering department heads to evaluate the performance of faculty members and seamlessly track their research grants, publications, and expenditures. Furthermore, professors and instructors gain personalized performance analysis tools, …


Creation Of Bound Half-Fermion Pairs By Solitons, Sapan Karki, Brett Altschul Apr 2024

Creation Of Bound Half-Fermion Pairs By Solitons, Sapan Karki, Brett Altschul

Faculty Publications

In the presence of topologically nontrivial bosonic field configurations, the fermion number operator may take on fractional eigenvalues, because of the existence of zero-energy fermion modes. The simplest examples of this occur in 1+1 dimensions, with zero modes attached to kink-type solitons. In the presence of a kink-antikink pair, the two associated zero modes bifurcate into positive and negative energy levels with energies ±ge-gΔ, in terms of the Yukawa coupling g≪1 and the distance Δ between the kink and antikink centers. When the kink and antikink are moving, it seems that there could be Landau–Zener-like transitions between these …


The Study Of Biomass Based Polymers And Cyclic Polymers, Yishayah Bension Apr 2024

The Study Of Biomass Based Polymers And Cyclic Polymers, Yishayah Bension

Theses and Dissertations

Plastics have become an integral part of everyday life, from household care to aerospace applications, polymers are involved in every industry. Most of these polymeric materials are derived from petroleum feedstocks which have deleterious effects on our environment. The production of petrochemicals has led to an increase in greenhouse gases and microplastic pollution which have accelerated climate change. My research focuses on utilizing existing biomasses to improve the plastic economy’s circularity. This work develops new materials from bio-based polymers such as lignin and soybean oil. Raw lignin suffers from inherently weak mechanical properties, poor solubility, processability, and molecular structure ambiguity. …


Comparison Of Raw Accelerometry Data From Actigraph, Apple Watch, Garmin, And Fitbit Using A Mechanical Shaker Table, James W. White Iii, Olivia L. Finnegan, Nick Tindall, Srihari Nelakuditi, David E. Brown Iii, Russell R. Pate Ph.D., Gregory J. Welk, Massimiliano De Zambotti, Rahul Ghosal, Yuan Wang, Sarah Burkart, Elizabeth L. Adams, Mvs Chandrashekhar, Bridget Armstrong, Michael W. Beets, Robert Weaver Med, Phd Mar 2024

Comparison Of Raw Accelerometry Data From Actigraph, Apple Watch, Garmin, And Fitbit Using A Mechanical Shaker Table, James W. White Iii, Olivia L. Finnegan, Nick Tindall, Srihari Nelakuditi, David E. Brown Iii, Russell R. Pate Ph.D., Gregory J. Welk, Massimiliano De Zambotti, Rahul Ghosal, Yuan Wang, Sarah Burkart, Elizabeth L. Adams, Mvs Chandrashekhar, Bridget Armstrong, Michael W. Beets, Robert Weaver Med, Phd

Faculty Publications

The purpose of this study was to evaluate the reliability and validity of the raw accelerometry output from research-grade and consumer wearable devices compared to accelerations produced by a mechanical shaker table. Raw accelerometry data from a total of 40 devices (i.e., n = 10 ActiGraph wGT3X-BT, n = 10 Apple Watch Series 7, n = 10 Garmin Vivoactive 4S, and n = 10 Fitbit Sense) were compared to reference accelerations produced by an orbital shaker table at speeds ranging from 0.6 Hz (4.4 milligravity-mg) to 3.2 Hz (124.7mg). Two-way random effects absolute intraclass correlation coefficients (ICC) tested inter-device reliability. …


Enriched Regions Of 228Ra Along The U.S. Geotraces Pacific Meridional Transect (Gp15), Willard S. Moore, Matt Charette, Paul Henderson, Doug Hammond, Nathaniel Kemnitz, Emilie Leroy, Eun Young Kwon, Mikael Hult Mar 2024

Enriched Regions Of 228Ra Along The U.S. Geotraces Pacific Meridional Transect (Gp15), Willard S. Moore, Matt Charette, Paul Henderson, Doug Hammond, Nathaniel Kemnitz, Emilie Leroy, Eun Young Kwon, Mikael Hult

Faculty Publications

The half‐life of 228Ra (5.7 years) aligns well with near‐surface and near‐bottom ocean mixing timescales. Because 228Ra is sourced from sediments, regions of enhanced activity represent water that has recently interacted with sediments on the continental margin or seabed. The GP15 meridional transect from Alaska to Tahiti along152°W encountered several regions in the upper ocean where 228Ra was enriched. These enrichments follow surface and subsurface ocean current patterns and pair with earlier measurements of 228Ra and transient radionuclides to reveal the origins of these enriched regions. An enriched region at Alaska margin stations 1–3 was sourced locally but did not …


Graph Theory And Graph Neural Network Assisted High-Throughput Crystal Structure Prediction And Screening For Energy Conversion And Storage, Joshua Ojih, Mohammed Al-Fahdi, Yagang Yao, Jianjun Hu, Ming Hu Mar 2024

Graph Theory And Graph Neural Network Assisted High-Throughput Crystal Structure Prediction And Screening For Energy Conversion And Storage, Joshua Ojih, Mohammed Al-Fahdi, Yagang Yao, Jianjun Hu, Ming Hu

Faculty Publications

Prediction of crystal structures with desirable material properties is a grand challenge in materials research, due to the enormous search space of possible combinations of elements and their countless arrangements in 3D space. Despite the recent progress of a few crystal structure prediction algorithms, most of those methods only target a few specific material families or are restricted to simple systems with limited element diversity. Moreover, these algorithms are usually coupled with first principles calculations and thus are computationally expensive and very time consuming. Therefore, establishing a workflow that can generate a large number of hypothetical structures with diverse elements …


Radiation From An Oscillating Dipole In The Presence Of Photon-Sector Cpt And Lorentz Violation, Joshua O'Connor, Brett Altschul Feb 2024

Radiation From An Oscillating Dipole In The Presence Of Photon-Sector Cpt And Lorentz Violation, Joshua O'Connor, Brett Altschul

Faculty Publications

We examine one of the standard loci for studying electromagnetic wave emission - the radiation from an oscillating electric dipole - in a model in which the electromagnetic sector is modified to include novel CPT- and Lorentz-violating propagation effects involving a preferred axial vector background. We evaluate the vacuum-birefringent radiation fields, including nonperturbative terms where appropriate. In general, the energy momentum carried by the fields in this model is known to have a complicated nonperturbative structure, which cannot be captured by naive power-series expansions in the components of the preferred background vector. However, we nevertheless find that at the lowest …


Unimer Suppression Enables Supersaturated Homopolymer Swollen Micelles With Long-Term Stability After Glassy Entrapment, Eric R. Williams, Christian X. Ruff, Morgan Stefik Feb 2024

Unimer Suppression Enables Supersaturated Homopolymer Swollen Micelles With Long-Term Stability After Glassy Entrapment, Eric R. Williams, Christian X. Ruff, Morgan Stefik

Faculty Publications

Micelle sizes are critical for a range of applications where the simple ability to adjust and lock in specific stable sizes has remained largely elusive. While micelle swelling agents are well-known, their dynamic re-equilibration in solution implies limited stability. Here, a non-equilibrium processing sequence is studied where supersaturated homopolymer swelling is combined with glassy-core (“persistent”) micelles. This path-dependent process was found to sensitively depend on unimer concentration as revealed by DLS, SAXS, and TEM analysis. Here, lower-selectivity solvent combinations led to the formation of unimer-homopolymer aggregates and eventual precipitation, reminiscent of anomalous micellization. In contrast, higher-selectivity solvents enabled supersaturated homopolymer …


Unimer Suppression Enables Supersaturated Homopolymer Swollen Micelles With Long-Term Stability After Glassy Entrapment, Eric R. Williams, Christian X. Ruff, Morgan Stefik Feb 2024

Unimer Suppression Enables Supersaturated Homopolymer Swollen Micelles With Long-Term Stability After Glassy Entrapment, Eric R. Williams, Christian X. Ruff, Morgan Stefik

Faculty Publications

Micelle sizes are critical for a range of applications where the simple ability to adjust and lock in specific stable sizes has remained largely elusive. While micelle swelling agents are well-known, their dynamic re-equilibration in solution implies limited stability. Here, a non-equilibrium processing sequence is studied where supersaturated homopolymer swelling is combined with glassy-core (“persistent”) micelles. This path-dependent process was found to sensitively depend on unimer concentration as revealed by DLS, SAXS, and TEM analysis. Here, lower-selectivity solvent combinations led to the formation of unimer-homopolymer aggregates and eventual precipitation, reminiscent of anomalous micellization. In contrast, higher-selectivity solvents enabled supersaturated homopolymer …


Muse-Alma Haloes X: The Stellar Masses Of Gas-Rich Absorbing Galaxies, Ramona Augustin, Céline Péroux, Arjun Karki, Varsha Kulkarni, Simon Weng, A Hamanowicz, M Hayes, J C. Howk, G G. Kacprzak, A Klitsch, M A. Zwaan, A Fox, A Biggs, A Y. Fresco, S Kassin, H. Kuntschner Feb 2024

Muse-Alma Haloes X: The Stellar Masses Of Gas-Rich Absorbing Galaxies, Ramona Augustin, Céline Péroux, Arjun Karki, Varsha Kulkarni, Simon Weng, A Hamanowicz, M Hayes, J C. Howk, G G. Kacprzak, A Klitsch, M A. Zwaan, A Fox, A Biggs, A Y. Fresco, S Kassin, H. Kuntschner

Faculty Publications

The physical processes by which gas is accreted onto galaxies, transformed into stars, and then expelled from galaxies are of paramount importance to galaxy evolution studies. Observationally constraining each of these baryonic components in the same system, however, is challenging. Furthermore, simulations indicate that the stellar mass of galaxies is a key factor influencing CGM properties. Indeed, absorption lines detected against background quasars offer the most compelling way to study the cold gas in the circumgalactic medium (CGM). The MUSE-ALMA Haloes survey is composed of quasar fields covered with VLT/MUSE observations, comprising 32 H i absorbers at 0.2 < z < 1.4 and 79 associated galaxies, with available or upcoming molecular gas measurements from ALMA. We use a dedicated 40-orbit HST …


A New Improvement Of A Fibonacci Inequality, Quang Hung Tran Jan 2024

A New Improvement Of A Fibonacci Inequality, Quang Hung Tran

Journal of the South Carolina Academy of Science

This paper provides an improvement to an inequality involving the Fibonacci sequence contained in [1,2].


The Effect Of Exposure To Lentinula Edodes And Flammulina Velutipes On The Biodegradation Of Crystallized Polylactic Acid, Iraine Taine Jan 2024

The Effect Of Exposure To Lentinula Edodes And Flammulina Velutipes On The Biodegradation Of Crystallized Polylactic Acid, Iraine Taine

Journal of the South Carolina Academy of Science

Crystallized polylactic acid (CPLA) is a prevalent bioplastic which, despite being biodegradable, is extremely resistant to decomposition in natural environments. As a result, CPLA waste contamination is rapidly becoming a prevalent issue. Lentinula edodes and Flammulina velutipes are two widespread white-rot fungi whose capabilities for bioplastic degradation have not been examined. This study aimed to determine a natural approach for reducing plastic waste by evaluating the ability of L. edodes and F. velutipes to degrade CPLA bioplastic. It was hypothesized that CPLA samples would decrease in mass when individually treated with L. edodes and F. velutipes due to their similarities …


Table Of Contents Jan 2024

Table Of Contents

Journal of the South Carolina Academy of Science

No abstract provided.


A Generalization Of The Graham-Pollak Tree Theorem To Even-Order Steiner Distance, Joshua Cooper, Gabrielle Tauscheck Jan 2024

A Generalization Of The Graham-Pollak Tree Theorem To Even-Order Steiner Distance, Joshua Cooper, Gabrielle Tauscheck

Faculty Publications

Graham and Pollak showed in 1971 that the determinant of a tree’s distance matrix depends only on its number of vertices, and, in particular, it is always nonzero. The Steiner distance of a collection of k vertices in a graph is the fewest number of edges in any connected subgraph containing those vertices; for k = 2, this reduces to the ordinary definition of graphical distance. Here we show that the hyperdeterminant of the kth order Steiner distance hypermatrix is always nonzero if k is even, extending their result beyond k = 2. Previously, the authors showed that the k-Steiner …


Note On The Spectra Of Steiner Distance Hypermatrices, Joshua Cooper, Zhibin Du Jan 2024

Note On The Spectra Of Steiner Distance Hypermatrices, Joshua Cooper, Zhibin Du

Faculty Publications

The Steiner distance of a set of vertices in a graph is the fewest number of edges in any connected subgraph containing those vertices. The order-k Steiner distance hypermatrix of a graph is the n-dimensional array indexed by vertices, whose entries are the Steiner distances of their corresponding indices. In the case of k = 2, this reduces to the classical distance matrix of a graph. Graham and Pollak showed in 1971 that the determinant of the distance matrix of a tree only depends on its number n of vertices. Here, we show that the hyperdeterminant of the Steiner distance …


Empowering Causal Machine Learning For Large-Scale Manufacturing Pipelines With Knowledge Graphs, Yuxin Zi, Cory Henson, Amit P. Sheth Jan 2024

Empowering Causal Machine Learning For Large-Scale Manufacturing Pipelines With Knowledge Graphs, Yuxin Zi, Cory Henson, Amit P. Sheth

Faculty Publications

Understanding causal relations within manufacturing pipelines is crucial for key manufacturing tasks such as anomaly detection and root cause analysis. However, existing causal machine learning (causal ML) approaches struggle to scale effectively to the vast number of variables present in manufacturing settings. We advocate for incorporating domain knowledge within the manufacturing pipelines, represented as knowledge graphs (KGs), for designing causal ML methods for large-scale manufacturing problems. Knowledge graphs can encode rich contextual information about the interactions and dependencies between different components and stages of the manufacturing pipeline, providing a structured framework to guide the discovery of causal relationships. By incorporating …


Neurosymbolic Ai Approach To Attribution In Large Language Models, Deepa Tilwani, Revathy Venkataramanan, Amit P. Sheth Jan 2024

Neurosymbolic Ai Approach To Attribution In Large Language Models, Deepa Tilwani, Revathy Venkataramanan, Amit P. Sheth

Faculty Publications

Attribution in large language models (LLMs) remains a significant challenge, particularly in ensuring the factual accuracy and reliability of the generated outputs. Current methods for citation or attribution, such as those employed by tools like Perplexity.ai and Bing Search-integrated LLMs, attempt to ground responses by providing real-time search results and citations. However, so far, these approaches suffer from issues such as hallucinations, biases, surface-level relevance matching, and the complexity of managing vast, unfiltered knowledge sources. While tools like Perplexity.ai dynamically integrate web-based information and citations, they often rely on inconsistent sources such as blog posts or unreliable sources, which limits …


Petrography Study Of The Recent Sediments In Hareer’S Region At Basrah Governorate - Southern Iraq, K J. Al-Sudani, B N. Albadran, A S Y Al-Hadadi, M H. Al-Jaberi, Jennifer R. Pournelle Jan 2024

Petrography Study Of The Recent Sediments In Hareer’S Region At Basrah Governorate - Southern Iraq, K J. Al-Sudani, B N. Albadran, A S Y Al-Hadadi, M H. Al-Jaberi, Jennifer R. Pournelle

Faculty Publications

Two sites of Hareer’s region is located in the southern part of Iraq, specifically in the northern Basrah Governorate. The sites are at a depth of 5 meters. The results of heavy mineral analysis showed that there are fifteen types include; Opaque grain (Iron Oxide), Chlorite, Muscovite mica, Biotite, Orthopyroxene, Clinopyroxene, Amphibole (Hornblende and Actinolite), Epidote, Garnet, Kyanite, Staurolite, Zircon, and Tourmaline. On the other hand the light minerals and the results of the mineral analyses revealed that they were primarily composed of rock fragments, with a variety of quartz minerals, feldspar minerals, evaporate minerals, clay-coated grains, and trace amounts …


Multi-Omics Integrative Analysis For Incomplete Data Using Weighted P-Value Adjustment Approaches, Wenda Zhang, Zichen Ma, Yen Yi Ho, Shuyi Yang, Joshua Habiger, Hsin Hsiung Huang, Yufei Huang Jan 2024

Multi-Omics Integrative Analysis For Incomplete Data Using Weighted P-Value Adjustment Approaches, Wenda Zhang, Zichen Ma, Yen Yi Ho, Shuyi Yang, Joshua Habiger, Hsin Hsiung Huang, Yufei Huang

Faculty Publications

The advancements in high-throughput technologies provide exciting opportunities to obtain multi-omics data from the same individuals in a biomedical study, and joint analyses of data from multiple sources offer many benefits. However, the occurrence of missing values is an inevitable issue in multi-omics data because measurements such as mRNA gene expression levels often require invasive tissue sampling from patients. Common approaches for addressing missing measurements include analyses based on observations with complete data or multiple imputation methods. In this paper, we propose a novel integrative multi-omics analytical framework based on p-value weight adjustment in order to incorporate observations with incomplete …


Genome-Wide Search Algorithms For Identifying Dynamic Gene Co-Expression Via Bayesian Variable Selection, Wenda Zhang, Zichen Ma, Lianming Wang, Daping Fan, Yen Yi Ho Dec 2023

Genome-Wide Search Algorithms For Identifying Dynamic Gene Co-Expression Via Bayesian Variable Selection, Wenda Zhang, Zichen Ma, Lianming Wang, Daping Fan, Yen Yi Ho

Faculty Publications

A wealth of gene expression data generated by high-throughput techniques provides exciting opportunities for studying gene-gene interactions systematically. Gene-gene interactions in a biological system are tightly regulated and are often highly dynamic. The interactions can change flexibly under various internal cellular signals or external stimuli. Previous studies have developed statistical methods to examine these dynamic changes in gene-gene interactions. However, due to the massive number of possible gene combinations that need to be considered in a typical genomic dataset, intensive computation is a common challenge for exploring gene-gene interactions. On the other hand, oftentimes only a small proportion of gene …