Physical Sciences and Mathematics Commons^™

New Techniques For Studying Ocean Eddy Dynamics In The Arabian Sea And The Gulf Of Mexico, Paul Andrew Ernst

Theses and Dissertations

Coherent vortices known as eddies are ubiquitous throughout the world’s oceans and are responsible for modulating regional climates via the transfer of heat, momentum, and salt. Two regions where eddies are particularly prominent are the Arabian Sea (AS) and the Gulf of Mexico (GoM). This dissertation advances the study of eddies in these regions by developing and employing new techniques in conjunction with remotely sensed data and high-resolution ocean models. These models focus particularly on lesser-studied eddy components at the subsurface and the submesoscale (below 25 km in radius).

The first component of this dissertation focuses on the Lakshadweep High …

The Control And Operation Of Optical Sensors For Environmental Monitoring With Microcontrollers As Data Acquisition And Processing Systems, Zechariah Kitzhaber

Theses and Dissertations

Phytoplankton are microscopic unicellular organisms, and they are ubiquitous in marine and freshwater environments across the globe. They play a critical role in primary production, carbon fixation, and O2 production through photosynthesis. Phytoplankton comprise an abundant variety of genera and species, and the taxonomic makeup of a community can be an important indicator of environmental health. Phytoplankton are spatially and taxonomically diverse; they change in size and cellular content throughout their lifetime, and they can also alter their pigmentation in response to environmental factors, so it is important to understand the variability in size and pigmentation between individuals of the …

Scene Text Detection And Recognition Via Discriminative Representation, Liang Zhao

Theses and Dissertations

Scene texts refer to arbitrary text presented in an image captured by a camera in the real world. The tasks of scene text detection and recognition from complex images play a crucial role in computer vision, with potential applications in scene understanding, information retrieval, robotics, autonomous driving, etc. Despite the notable progress made by existing deep-learning methods, achieving accurate text detection and recognition remains challenging for robust real-world applications. The challenges in scene text detection and recognition stem from: 1) diverse text shapes, fonts, colors, styles, layouts, etc.; 2) countless combinations of characters with unfixed attributes for complete detection, coupled …

Global Well-Posedness Of Nonlocal Differential Equations Arising From Traffic Flow, Thomas Joseph Hamori

Theses and Dissertations

Macroscopic traffic flow models describe the evolution of a function ρ(t, x), which represents the traffic density at time t and location x according to a differential equation (typically a conservation law). Numerous models have been introduced over the years which capture the phenomenon of shock formation in which the solution develops a discontinuity. This presents difficulties from the standpoint of mathematical analysis, necessitating the consideration of weak solutions. At the same time, this undesirable mathematical behavior corresponds to unsafe driving conditions on real roadways, in which the heaviness of traffic may vary abruptly and dramatically. This thesis introduces and …

Electronic Structure Investigation Of Photoswitch-Embedded Organic Frameworks And External Electric Field Effects On Carbon Dioxide, Austin Hill

Theses and Dissertations

Metal- and Covalent-Organic Frameworks (MOFs and COFs, respectively) are chemically versatile systems that have diverse applications, ranging from drug delivery to energy storage. This versatility is due to the highly tunable nature of organic frameworks, which utilize metal clusters, chemically diverse metals, and organic ligands. Researchers have recently demonstrated how MOFs and COFs can be remotely tuned through the use of photochromic organic linkers and light (Martin, et al., 2022). The implications of these findings are significant and have numerous applications, primarily in optical switching and energy storage. However, the photochromic mechanism within the organic framework must be investigated, which …

Assessing Multi-Annual Phytoplankton Community Compositions And Biomass Across Tidal Creek And Open Water Estuarine Habitats In South Carolina, Shannon Elizabeth Powers

Theses and Dissertations

The urbanization of coastal environments in recent decades has caused an accelerating increase in nutrient-rich runoff from the landscape. The presence of these excess nutrients in the aquatic environment can result in degradation of water quality and harmful algal blooms. In South Carolina (SC), coastal development continues to threaten the resiliency of salt marsh estuaries, especially in combination with other stressors like climate change and sea level rise. Estuaries are important nurseries and habitats for fisheries and ecotourism. The South Carolina Estuarine and Coastal Assessment Program (SCECAP) is an ongoing monitoring program that assesses the habitat condition along the coast …

Impaired Waters: New Treatments And Improved Methods For Pfas And Algae Toxins, Alexandria Forster

Theses and Dissertations

Per- and polyfluoroalkyl substances (PFAS) are high-profile environmental contaminants, many having long persistence in the environment and widespread presence in humans and wildlife. Following phase-out of perfluorooctane sulfonate (PFOS) and perfluorooctanoic acid (PFOA) in North America and restrictions in Europe, PFAS replacements are now widely found in the environment. While liquid chromatography (LC)-mass spectrometry (MS) is typically used for measurement, much of the PFAS is missed. To more comprehensively capture organic fluorine, we developed sensitive and robust methods using activated carbon adsorption, solid phase extraction, and combustion ion chromatography (CIC) to measure total organic fluorine (TOF) in industrial wastewaters, river …

A Generalization Of The Graham-Pollak Tree Theorem To Even-Order Steiner Distance, Joshua N. Cooper, Gabrielle Tauscheck

Faculty Publications

Graham and Pollak showed in 1971 that the determinant of a tree’s distance matrix depends only on its number of vertices, and, in particular, it is always nonzero. The Steiner distance of a collection of 𝑘 vertices in a graph is the fewest number of edges in any connected subgraph containing those vertices; for 𝑘 =2 , this reduces to the ordinary definition of graphical distance. Here we show that the hyperdeterminant of the 𝑘 th order Steiner distance hypermatrix is always nonzero if 𝑘 is even, extending their result beyond 𝑘 =2 . Previously, the authors showed that the …

Interpregnancy Interval And Adverse Perinatal Outcomes: A Within-Individual Comparative Method, Maria Sevoyan, Marco Geraci, Edward A. Frongillo, Jihong Liu, Nansi S. Boghossian

Faculty Publications

Background and Aim: Previously observed associations between interpregnancy interval (IPI) and perinatal outcomes using a between-individual method may be confounded by unmeasured maternal factors. This study aims to examine the association between IPI and adverse perinatal outcomes using within-individual comparative analyses. Methods: We studied 10,647 individuals from the National Institute of Child Health and Human Development Consecutive Pregnancies Study in Utah with ≥3 liveborn singleton pregnancies. We matched two IPIs per individual and used conditional logistic regression to examine the association between IPI and adverse perinatal outcomes, including preterm birth (PTB, < 37 weeks’ gestation), small-for-gestational-age (SGA, < 10th percentile of sex-specific birthweight for gestational age), low birthweight (LBW, < 2,500 g), and neonatal intensive care unit (NICU) admission. Point and 95% confidence interval (CI) estimates were adjusted for factors that vary across pregnancies within individuals. Results: CIs did not unequivocally support either an increase or a decrease in the odds of PTB (adjusted odds ratio [aOR]: 1.31, 95% CI: 0.87, 1.96), SGA (aOR: 0.81, 95% CI: 0.51, 1.28), LBW (aOR: 1.59, 95% CI: 0.90, 2.80), or NICU admission (aOR: 0.96, 95% CI: 0.66, 1.40) for an IPI < 6 months compared to 18–23-months IPI (reference), and neither did the CIs for the aOR of IPIs of 6–11 and 12–18 months compared to the reference. In contrast, an IPI ≥24 months was associated with increased odds of LBW (aOR: 1.66, 95% CI: 1.03, 2.66 for 24–29 months; aOR: 2.27, 95% CI: 1.21, 4.29 for 30–35 months; and aOR: 2.09, 95% CI: 1.17, 3.72 for ≥36 months). Conclusions: Using a within-individual comparative method, we did not find evidence that a short IPI compared to the recommended IPI of 18–23 months was associated with increased odds of PTB, SGA, LBW, and NICU admission. IPI ≥ 24 months was associated with increased odds of delivering an LBW infant.

On The Asymptotics Of Cubic Fields Ordered By General Invariants, Arul Shankar, Frank Thorne

Faculty Publications

In this article, we introduce a class of invariants of cubic fields termed “generalized discriminants”. We then obtain asymptotics for the families of cubic fields ordered by these invariants. In addition, we determine which of these families satisfy the Malle–Bhargava heuristic.

Childhood Sexual Abuse And Compulsive Sexual Behavior Among Men Who Have Sex With Men Newly Diagnosed With Hiv, Monique J. Brown, Medinat Omobola Osinubi, Daniel Amoatika, Mohammad Rifat Haider, Sally Kirklewski, Patrick Wilson, Nathan B. Hansen

Faculty Publications

Childhood sexual abuse (CSA) continues to be a public health challenge. The prevalence of experiencing CSA is higher among men who have sex with men (MSM) than the general population. CSA has been linked to compulsive sexual behavior (CSB) among varying populations but has not been examined among MSM who were newly diagnosed with HIV. Therefore, the aims of this study were to assess the direct association between CSA and CSB among newly diagnosed MSM living with HIV, and to identify the potential mediating roles of depressive symptoms and emotion regulation in the association between CSA and CSB. The study …

Efficient Machine Learning On Scientific Data Using Bayesian Optimization, Rui Xin

Theses and Dissertations

Deep Learning is pivotal in advancing data analysis across various scientific fields, from genomics to materials discovery. Despite its widespread use, efficiently learning from limited data and operating under resource constraints remains a significant challenge, often limiting its full potential in environments where data is scarce or resources are restricted. This dissertation explores Active Learning and Automated Machine Learning (AutoML) powered by Bayesian Optimization to enhance the efficiency of machine learning across multiple disciplines. It focuses on algorithm optimization and data management through three interconnected studies. In the first study, we investigate how data management technique - active learning helps …

Calibration And Use Of The Transparency Tube As An Estimate Of Turbidity: An Analysis Of Factors Controlling Light Attenuation In Estuarine Waters, Makenna Leigh Thompson

Theses and Dissertations

The transparency tube is low-cost, portable, and easy to use to measure the transparency or clarity of the water. Filling the tube with water creates a small-scale water column where water will be slowly drained out of the bottom until the Secchi disk at the bottom of the tube is visible from the top opening, and the depth of the remaining water in the tube is recorded in centimeters. Unlike traditional Secchi disk measurements, the advantage of this instrument is that sampling depth in highly turbid waters is possible with a centimeter scale resolution. Transparency tube measurement, through careful calibrations, …

Preregistration And Registration As A New Method For Transparency Of External Validation In Artificial Intelligence And Machine Learning Applications To Address Overfitting, Underspecification, And Shortcut Learning, Marilyn Elaine Gartley

Theses and Dissertations

Statistics has been defined as the study of how information should be employed to reflect on and give guidance for action in a practical situation involving uncertainty. The essence of uncertainty is that there is more than one possible outcome, and the actual outcome is unknown in advance; it is indeterminate. The goal of statistical methods is inference: namely, statistical inference—reaching conclusions about populations or deriving scientific insights from data which are collected from a representative sample of that population through providing a mathematical understanding of inference, quantifying the degree of support that data offer for assertions of knowledge, as …

Enhancing The Security In High-Speed Networks Using P4 Programmable Switches, Ali Alsabeh

Theses and Dissertations

Network security has become increasingly essential in today's networks due to the growth of various network applications, such as Machine Learning (ML) and Fifth-Generation (5G) Networks. One fundamental Internet protocol is the Domain Name System (DNS), which maps domain names to Internet Protocol (IP) addresses. Despite its importance, DNS traffic is often forwarded without being analyzed, making it a center of ever-evolving attacks. Traditionally, defense strategies are implemented on fixed-function security middleboxes that are costly, proprietary, and hard to manage. Alternatively, defenses implemented in software use general-purpose servers (e.g., the control plane of a Software-Defined Networking (SDN) network) that cannot …

Offshore Detachment Of The Winyah Bay Plume Through Ekman Dynamics Under Upwelling Conditions, Isabella Moore

Theses and Dissertations

ABSTRACT River plumes play a crucial role in coastal ecosystems by influencing land-ocean interactions, primary production, water quality, and ocean circulation. This study presents observations of a buoyant river plume off Winyah Bay, South Carolina (USA), conducted in 2020 and 2021. Observations comprised CTD casts and shipborne ADCP profiles as well as near surface flow measurements from a floating platform and microstructure profiles in uprising mode. This research focuses on the offshore transport of the buoyant water through Ekman dynamics under upwelling-favorable conditions. Under varying wind forcing and stratification scenarios, the Winyah Bay plume either remains near the coast or …

Multi-Scale Deep Representation Learning In Synthetic Biology, Xiaoyi Liu

Theses and Dissertations

Synthetic biology advances and combines the expertise of engineers and biologists, bridging the gap between engineering and natural life. Synthetic biology has been generally categorized into two broad branches by developing new biological components, networks, and systems to reprogram organisms. The first branch involves using synthetic molecules to mimic natural biological functions. The second branch focuses on assembling natural biological components in novel ways, aiming to produce systems with unique, practical functions. Thus, the de novo engineering of biological modules and synthetic pathways is used in related practical bioengineering applications, such as drug-targeting strategies and microbial product manufacturing. Therefore, synthetic …

The Expression Of Mantle Seismic Anisotropy In The Global Seismic Wavefield, Jonathan Wolf, Maureen D. Long, Daniel A. Frost, Tarje Nissen-Meyer

Faculty Publications

The dependence of seismic wave speeds on propagation or polarization direction, called seismic anisotropy, is a relatively direct indicator of mantle deformation and flow. Mantle seismic anisotropy is often inferred from measurements of shear-wave splitting. A number of standard techniques to measure shear-wave splitting have been applied globally; for example, *KS splitting is often used to measure upper mantle anisotropy. In order to obtain robust constraints on anisotropic geometry, it is necessary to sample seismic anisotropy from different directions, ideally using different seismic phases with different incidence angles. However, many standard analysis techniques can only be applied for certain epicentral …

The Fate Of Fixed Nitrogen In Santa Barbara Basin Sediments During Seasonal Anoxia, Xuefeng Peng, David J. Yousavich, Annie Bourbonnais, Frank Wenzhöfer, Felix Janssen, Tina Treude, David L. Valentine

Faculty Publications

Despite long-standing interest in the biogeochemistry of the Santa Barbara Basin (SBB), there are no direct rate measurements of different nitrogen transformation processes. We investigated benthic nitrogen cycling using in situ incubations with ¹⁵NO ₃̅  addition and quantified the rates of total nitrate (NO ₃̅) uptake, denitrification, anaerobic ammonia oxidation (anammox), N₂O production, and dissimilatory nitrate reduction to ammonia (DNRA). Denitrification was the dominant NO ₃̅ reduction process, while anammox contributed 0 %–27 % to total NO ₃̅ reduction. DNRA accounted for less than half of NO ₃̅ reduction except at the …

Electrochemical Detection Of Glucose Using A Prussian Blue Modified Electrodes Combined With Glucose Encapsulated Within A Xerogel, Daniel Baker, Sarah Davis, Drew Budner

Journal of the South Carolina Academy of Science

Recent literature reports examples of electrochemical biosensor systems that have been developed based upon on the encapsulation of enzymes and metal nanoparticles into a xerogel. These systems have been utilized for the detection of biologically important compounds, such as glucose. These reports on these systems have found acceptable detection limits and linear ranges. At the same time, Prussian blue modified electrodes have been shown to have better operating parameters than metal electrodes for the detection of hydrogen peroxide. In this work, a biosensor system is described that incorporates the encapsulation of glucose oxidize within a xerogel combined with electrochemical detection …

Incorporating Oxygen Isotopes Of Oxidized Reactive Nitrogen In The Regional Atmospheric Chemistry Mechanism, Version 2 (Icoin-Racm2), Wendell W. Walter, Masayuki Takeuchi, Nga L. Ng, Meredith G. Hastings

Faculty Publications

The oxygen isotope anomaly (Δ¹⁷O = δ¹⁷O − 0.52 × δ¹⁸O > 0) has proven to be a robust tool for probing photochemical cycling and atmospheric formation pathways of oxidized reactive nitrogen (NO_y). Several studies have developed modeling techniques to implicitly model Δ¹⁷O of NO_y molecules based on numerous assumptions that may not always be valid. Thus, these models may be oversimplified and limit our ability to compare model Δ¹⁷O values of NO_y with observations. In this work, we introduce a novel method for explicitly tracking Δ …

Heterogeneous Mantle Effects On The Behaviour Of Smks Waves And Outermost Core Imaging, Daniel A. Frost, Edward J. Garnero, Neala Creasy, Jonathan Wolf, Ebru Bozdağ, Maureen D. Long, Adeolu Aderoju, Reynaldo Vite

Faculty Publications

Seismic traveltime anomalies of waves that traverse the uppermost 100–200 km of the outer core have been interpreted as evidence of reduced seismic velocities(relative to radial reference models) just below the core–mantle boundary (CMB). These studies typically investigate differential traveltimes of SmKS waves, which propagate as P waves through the shallowest outer core and reflect from the underside of the CMB m times. The use of SmKS and S(m-1)KS differential traveltimes for core imaging are often assumed to suppress contributions from earthquake location errors and unknown and unmodelled seismic velocity heterogeneity in the mantle. The goal of this study is …

Advancing Objective Mobile Device Use Measurement Inchildren Ages 6–11 Through Built-In Device Sensors: A Proof-Of-Concept Study, Olivia L. Finnegan, Robert Glenn Weaver Med, Phd, Hongpeng Yang, James W. White, Srihari Nelakuditi, Zifei Zhong, Rahul Ghosal Ph.D., Yan Tong, Aliye B. Cepni, Elizabeth L. Adams, Sarah Burkart Mph, Ph.D., Michael W. Beets Med, Mph, Phd, Bridget Armstrong Ph.D.

Faculty Publications

Mobile devices (e.g., tablets and smartphones) have been rapidly integrated into the lives of children and have impacted howchildren engage with digital media. The portability of these devices allows for sporadic, on-demand interaction, reducing theaccuracy of self-report estimates of mobile device use. Passive sensing applications objectively monitor time spent on a givendevice but are unable to identify who is using the device, a significant limitation in child screen time research. Behavioralbiometric authentication, using embedded mobile device sensors to continuously authenticate users, could be applied toaddress this limitation. This study examined the preliminary accuracy of machine learning models trained on iPad …

Perspective—Surface-Display Techniques In Electrochemical Biosensor Designs For Health Monitoring, Courtney J. Weber, Megan D. Whisonant, Olivia M. Clay, Olja Simoska

Faculty Publications

Enzymatic and microbial electrochemical biosensors integrate enzymes and microorganisms as biological recognition elements into the sensor design and functionality. Enzyme-based sensors offer high sensitivity and selectivity for target analyte detection. However, these have limited stability necessary for continuous analyte monitoring. Contrarily, microbe-based electrochemical sensors provide a means for continuous analyte sensing but are associated with challenges related to analyte selectivity in complex samples. To address these limitations, surface-display methods, which bind enzymes to microbial surfaces, enhance biosensor selectivity and sensitivity. This perspective outlines the application of surface-display techniques, offering a promising avenue for health monitoring.

Employing Digital Pcr For Enhanced Detection Of Perinatal Toxoplasma Gondii Infection: A Cross-Sectional Surveillance And Maternal-Infant Outcomes Study In El Salvador, Mary K. Lynn, Marvin Stanley Rodriguez Aquino, Pamela Michelle Cornejo Rivas, Xiomara Miranda, David F. Torres-Romero, Hanson Cowan, Madeleine M. Meyer, Willber D. Castro-Godoy, Mufaro Kanyangarara Ph.D., Stella Coker Watson Self Ph.D., Ms, Berry A. Campbell, Melissa Nolan Ph.D., Mph

Faculty Publications

Toxoplasma gondii is a parasitic infection that can be transmitted in utero, resulting in fetal chorioretinitis and other long-term neurological outcomes. If diagnosed early, pregnancy-safe chemotherapeutics can prevent vertical transmission. Unfortunately, diagnosis of acute, primary infection among pregnant women remains neglected, particularly in low-and-middle-income countries. Clinically actionable diagnosis is complex due to the commonality of infection during childhood and early adulthood which spawn long-last antibody titers and historically unreliable direct molecular diagnostics. The current study employed a cross-sectional T. gondii perinatal surveillance study using digital PCR, a next generation molecular diagnostic platform, and a maternal-fetal outcomes survey to ascertain …

Development Of An Experimentally Validated Computational Fluid Dynamics Model For A Pbi Membrane-Based Anhydrous Hcl Electrolyzer, Kris Likit-Anurak, Hunter R. Teel, Ishwor Karki, Ben I. Howard, Brian C. Benicewicz, Sirivatch Shimpalee, Benjamin H. Meekins

Faculty Publications

We report the development of an experimentally-validated computational fluid dynamics (CFD) model for simulation of an anhydrous HCl electrolyzer. The experimental data from 3 membrane variants was used to provide kinetic and membrane parameters for the model. The model not only accurately simulates overall electrolyzer performance, but it also provides key insights into the transport phenomena within the electrolyzer. The model allows simulation of experimental parameters like high HCl flowrates and increased cell pressure that pose a high safety risk to researchers. The model shows hotspots in the temperature distribution that will need to be addressed by flow field modification …

Duality Of Ensemble Systems Through Moment Representations, Vignesh Narayanan, Wei Zhang, Jr-Shin Li

Publications

Controlling large-scale dynamic population systems, known as ensemble control, is a pervasive and essential task in many emerging applications from diverse scientific domains. Previous focuses in the area of ensemble control have been placed on seeking open-loop control strategies due to unavailability of state feedback information for each individual system in the ensemble. In this paper, we develop a foundational framework for analysis and control of ensemble systems with closed feedback control loops. We introduce the notion of ensemble moments and construct moment systems associated with the ensemble systems. By extending the classical moment problem in mathematical analysis and statistics, …

Incorporating Solvent Effects In Dft: Insights From Cation Exchange In Faujasites, An T. Ta, Ayoub Daouli, R. Seaton Ullberg, Eric Fonseca, Vanessa Proust, Agnès Grandjean, Richard G. Hennig, Hans Conrad Zur Loye, Michael Badawi, Simon R. Phillpot

Faculty Publications

Zeolites are versatile materials renowned for their extra-framework cation exchange capabilities, with applications spanning diverse fields, including nuclear waste treatment. While detailed experimental characterization offers valuable insight, density functional theory (DFT) proves particularly adept at investigating ion exchange in zeolites, owing to its atomic and electronic resolution. However, the prevalent occurrence of zeolitic ion exchange in aqueous environments poses a challenge to conventional DFT modeling, traditionally conducted in a vacuum. This study seeks to enhance zeolite modeling by systematically evaluating predictive differences across varying degrees of aqueous solvent inclusion. Specifically focusing on monovalent cation exchange in Na-X zeolites, we explore …

Technology Development And Materials Research To Enable A Sustainable D-T Fusion Energy Fuel Cycle, Brenda L. Garcia-Diaz, David Babineau, James Klein, Robert Allgood, George Larsen, Holly B. Flynn, Dale Hitchcock, Tim Krentz, Chris Dandeneau, Lucas Angelette, Robert Sindelar

Journal of the South Carolina Academy of Science

No abstract provided.

Employing Digital Pcr For Enhanced Detection Of Perinatal Toxoplasma Gondii Infection: A Cross-Sectional Surveillance And Maternalinfant Outcomes Study In El Salvador, Mary K. Lynn, Marvin Stanley Rodriguez Aquino, Pamela Michelle Cornejo Rivas, Xiomara Miranda, David F. Torres-Romero, Hanson Cowan, Madeleine M. Meyer, Willber D. Castro-Godoy, Mufaro Kanyangarara Ph.D., Stella C.W. Self Ph.D., Ms, Berry A. Campbell, Melissa S. Nolan Ph.D., Mph

Faculty Publications

Toxoplasma gondii is a parasitic infection that can be transmitted in utero, resulting in fetal chorioretinitis and other long-term neurological outcomes. If diagnosed early, pregnancysafe chemotherapeutics can prevent vertical transmission. Unfortunately, diagnosis of acute, primary infection among pregnant women remains neglected, particularly in low-andmiddle-income countries. Clinically actionable diagnosis is complex due to the commonality of infection during childhood and early adulthood which spawn long-last antibody titers and historically unreliable direct molecular diagnostics. The current study employed a cross-sectional T. gondii perinatal surveillance study using digital PCR, a next generation molecular diagnostic platform, and a maternal-fetal outcomes survey to ascertain the …