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Full-Text Articles in Horticulture

Identifying Ecologically Relevant Scales Of Habitat Selection: Diel Habitat Selection In Elk, Caleb P. Roberts, James W. Cain Iii, Robert D. Cox Oct 2017

Identifying Ecologically Relevant Scales Of Habitat Selection: Diel Habitat Selection In Elk, Caleb P. Roberts, James W. Cain Iii, Robert D. Cox

Department of Agronomy and Horticulture: Faculty Publications

Although organisms make resource selection decisions at multiple spatiotemporal scales, not all scales are ecologically relevant to any given organism. Ecological patterns and rhythms such as behavioral and climatic patterns may provide a consistent method for identifying ecologically relevant scales of habitat selection. Using elk (Cervus canadensis) as an example species, we sought to test the ability of behavioral patterns to empirically partition diel scales for modeling habitat selection. We used model selection to partition diel scales by shifts in dominant behavior and then used resource selection probability functions to model elk habitat selection hierarchically at diel scales within seasons. …


Nebline, October 2017 Oct 2017

Nebline, October 2017

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Feature: Floodwater and Stormwater Can Contaminate Water Wells

Food & Health

Farm & Acreage

Pests & Wildlife

Horticulture

Early Childhood

4-H & Youth

and other extension news and events


Arkansas Corn And Grain Sorghum Peformance Tests 2017, R. D. Bond, J. A. Still, D. G. Dombek Oct 2017

Arkansas Corn And Grain Sorghum Peformance Tests 2017, R. D. Bond, J. A. Still, D. G. Dombek

Arkansas Agricultural Experiment Station Research Series

Corn and grain sorghum performance tests are conducted each year in Arkansas by the University of Arkansas System Division of Agriculture. The tests provide information to companies marketing seed within the state, and aid the Arkansas Cooperative Extension Service in formulating recommendations for producers.


Effects Of Nitrogen And Phosphorus Fertilizer And Topsoil Amendment On Native Plant Cover In Roadside Revegetation Projects, Heidi L. Hillhouse, Walter H. Schacht, Jonathan M. Soper, Carol E. Wienhold Oct 2017

Effects Of Nitrogen And Phosphorus Fertilizer And Topsoil Amendment On Native Plant Cover In Roadside Revegetation Projects, Heidi L. Hillhouse, Walter H. Schacht, Jonathan M. Soper, Carol E. Wienhold

Department of Agronomy and Horticulture: Faculty Publications

Establishing vegetation on roadsides following construction can be challenging, especially for relatively slow growing native species. Topsoil is generally removed during construction, and the surface soil following construction (“cut-slope soils”) is often compacted and low in nutrients, providing poor growing conditions for vegetation. Nebraska Department of Transportation (NDOT) protocols have historically called for nitrogen (N) and phosphorus (P) fertilization when planting roadside vegetation following construction, but these recommendations were developed for cool-season grass plantings and most current plantings use slower-establishing, native warmseason grasses that may benefit less than expected from current planting protocols. We evaluated the effects of nitrogen and …


Stability Of Cacopsylla Pyricola (Hemiptera: Psyllidae) Populations In Pacific Northwest Pear Orchards Managed With Long-Term Mating Disruption For Cydia Pomonella (Lepidoptera: Tortricidae), Kaushalya G. Amarasekare, Peter W. Shearer Sep 2017

Stability Of Cacopsylla Pyricola (Hemiptera: Psyllidae) Populations In Pacific Northwest Pear Orchards Managed With Long-Term Mating Disruption For Cydia Pomonella (Lepidoptera: Tortricidae), Kaushalya G. Amarasekare, Peter W. Shearer

Agricultural and Environmental Sciences Faculty Research

This study focused on conservation biological control of pear psylla, Cacopsylla pyricola, in the Pacific Northwest, USA. We hypothesized that insecticides applied against the primary insect pest, codling moth Cydia pomonella, negatively impact natural enemies of pear psylla, thus causing outbreaks of this secondary pest. Hence, the objective of this study was to understand how codling moth management influences the abundance of pear psylla and its natural enemy complex in pear orchards managed under long-term codling moth mating disruption programs. We conducted this study within a pear orchard that had previously been under seasonal mating disruption for codling moth for …


Nebline, September 2017 Sep 2017

Nebline, September 2017

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Feature: Early Childhood Educators Benefit from Mindfulness Reflection

Food & Health

Farm & Acreage

Pests & Wildlife

Horticulture

Early Childhood

4-H & Youth

and other extension news and events


Economies Of Scale In Integrated Pest Management In Vegetable And Fruit Production, Franklin Quarcoo, Conrad Bonsi, David Nii O. Tackie, Walter A. Hill, Gertrude Wall, George Hunter Sep 2017

Economies Of Scale In Integrated Pest Management In Vegetable And Fruit Production, Franklin Quarcoo, Conrad Bonsi, David Nii O. Tackie, Walter A. Hill, Gertrude Wall, George Hunter

Professional Agricultural Workers Journal

Abstract

Pest management is achieved directly using a variety of tools, including pesticides, and indirectly through a number of agronomic/cultural practices such as irrigation and fertilizer application; collectively these practices function to positively effect general plant health. Healthier plants are more resistant to or tolerant of pests. This study explores the scale differences that impact the pest management significance and suitability of certain agronomic practices. Scale differences were discussed using literature-based information, direct field observations, and anecdotal information on the relative advantages of drip and sprinkler irrigation systems; organic and conventional cultivation of crops; crop rotation versus mono-cropping systems; precision …


Reciprocal Effect Of Parental Lines On The Physiological Potential And Seed Composition Of Corn Hybrid Seeds, Juliana F. Santos, Lynnette M. A. Dirk, A. Bruce Downie, Mauricio F. G. Sanches, Roberval D. Vieira Sep 2017

Reciprocal Effect Of Parental Lines On The Physiological Potential And Seed Composition Of Corn Hybrid Seeds, Juliana F. Santos, Lynnette M. A. Dirk, A. Bruce Downie, Mauricio F. G. Sanches, Roberval D. Vieira

Horticulture Faculty Publications

Obtaining corn hybrid seeds (Zea mays L.) with high vigour depends on the parental lines and the direction of the cross, and this relates to seed desiccation tolerance and composition. This research studied reciprocal crosses between pairs of proprietary, elite parent lines (L1 and L5; L2 and L4) producing hybrid seeds with different qualities attempting to correlate vigour with seed composition, focusing on storage proteins, starch and soluble sugar amounts. Four corn hybrid seed lots produced from reciprocal crosses were compared (HS 15 with HS 51, and HS 24 with HS 42) by assessing germination, vigour, and seedling emergence …


Summaries Of Arkansas Cotton Research 2016, Fred Bourland Sep 2017

Summaries Of Arkansas Cotton Research 2016, Fred Bourland

Arkansas Agricultural Experiment Station Research Series

No abstract provided.


Identity Behind Glass: The Second Gore Place Greenhouse, Sean P. Romo Aug 2017

Identity Behind Glass: The Second Gore Place Greenhouse, Sean P. Romo

Graduate Masters Theses

This thesis examines the second greenhouse at Gore Place, a historic country estate in Waltham, Massachusetts. Gore Place was owned by and named for Christopher and Rebecca Gore, members of the 18th- and 19th-century political and economic elite in New England. The greenhouse was constructed in 1806, and excavation at the site took place in 2004, 2008, and 2012. The latter two projects were data recovery excavations, which exposed portions of the greenhouse’s foundations and interior, as well as several features in the yard surrounding the building. Historic greenhouses were prestigious structures, financially accessible only to institutions, governments, and the …


Assessing The Impact Of The Eqip High Tunnel Initiative, Analena B. Bruce, James R. Farmer, Elizabeth Maynard, Julia C.D. Valliant Aug 2017

Assessing The Impact Of The Eqip High Tunnel Initiative, Analena B. Bruce, James R. Farmer, Elizabeth Maynard, Julia C.D. Valliant

Department of Horticulture & Landscape Architecture Faculty Publications

Natural Resources Conservation Service (USDA NRCS) Seasonal High Tunnel Initiative, or HTI, that the USDA expects to strengthen local and regional food production by increasing the availability of fresh, locally grown food. Goals of the HTI include improved plant and soil quality, reduced nutrient and pesticide run­off, and increased availability of fresh vegetables and fruits for local food markets. This study explored the farm-level impacts of production via high tunnels among Indiana farmers relying on the infrastructure. We identify characteristics of farmers who have obtained high tunnels through the cost-share program, to better understand the types of farm enterprises that …


Improving Wildflower Longevity In Roadside Seeding Areas, Walter Schacht, Jonathan M. Soper, Carol Wienhold Aug 2017

Improving Wildflower Longevity In Roadside Seeding Areas, Walter Schacht, Jonathan M. Soper, Carol Wienhold

Nebraska Department of Transportation: Research Reports

Re-vegetation efforts on bare roadsides of newly-constructed highways are primarily focused on the stabilization of soil to reduce rates of erosion. The Nebraska Department of Transportation (NDOT) seeds roadsides with a diverse mixture of grasses and wildflowers for site stabilization as well as to enhance the visual quality of roadsides. Although grasses dominate roadside plantings in terms of cover and density, wildflowers are largely responsible for the visual enhancement of recently-seeded roadsides. In addition to the visual component, wildflowers provide essential ecological functions on roadsides. Wildflowers improve water and nutrient cycling in the compacted roadside soils by increasing water infiltration …


Control Of Glyphosate-Resistant Common Ragweed (Ambrosia Artemisiifolia L.) In Glufosinate-Resistant Soybean [Glycine Max (L.) Merr], Ethann R. Barnes, Stevan Z. Knezevic, Peter H. Sikkema, John L. Lindquist, Amit J. Jhala Aug 2017

Control Of Glyphosate-Resistant Common Ragweed (Ambrosia Artemisiifolia L.) In Glufosinate-Resistant Soybean [Glycine Max (L.) Merr], Ethann R. Barnes, Stevan Z. Knezevic, Peter H. Sikkema, John L. Lindquist, Amit J. Jhala

Department of Agronomy and Horticulture: Faculty Publications

Common ragweed emerges early in the season in Nebraska, USA and is competitive with soybean; therefore, preplant herbicides are important for effective control. Glyphosate has been used as a preplant control option; however, confirmation of glyphosate-resistant (GR) common ragweed in Nebraska necessitates evaluating other herbicide options. The objectives of this study were to (1) evaluate the efficacy of preplant (PP) herbicides followed by (fb) glufosinate alone or in tank-mixture with imazethapyr, acetochlor, or S-metolachlor applied post-emergence (POST) for control of GR common ragweed in glufosinate-resistant soybean; (2) their effect on common ragweed density, biomass, and soybean yield; and (3) the …


Pinching And Spacing Effects On Cut Sunflower (Helianthus Annuus) Production In East Texas, Rebecca B. Burnett Aug 2017

Pinching And Spacing Effects On Cut Sunflower (Helianthus Annuus) Production In East Texas, Rebecca B. Burnett

Electronic Theses and Dissertations

Three experiments evaluated pinching and spacing on Helianthus annuus in East Texas to determine their effects on growth and development. Experiment 1 was designed to determine the effects of pinching nodes 1, 2, 3, or 4 on ‘Pro Cut Gold’ sunflowers. Results from experiment 1 showed non-pinched plants produced marketable stem lengths and flower sizes, while pinched plants’ stem length, stem diameter, flower diameter, and disk diameter decreased compared to the non-pinched plants. The objective for experiment 2 was to evaluate pinching and spacing treatments on ‘Pro Cut Gold’ sunflowers. All spacings for non-pinched plants in experiment 2 produced marketable …


Pengaruh Inokulasi Trichoderma Sp Dan Varietas Bawang Merah Terhadap Penyakit Moler Dan Hasil Tanaman Bawang Merah (Allium Ascalonicum L), Deden, Uum Umiyati Aug 2017

Pengaruh Inokulasi Trichoderma Sp Dan Varietas Bawang Merah Terhadap Penyakit Moler Dan Hasil Tanaman Bawang Merah (Allium Ascalonicum L), Deden, Uum Umiyati

Jurnal Kultivasi

Bawang merah (Allium ascalonicum L.) merupakan salah satu komoditas hortikultura unggulan yang sejak lama telah diusahakan oleh petani secara intensif, khusunya petani di wilayah Cirebon. Salah satu penyakit yang sering dijumpai pada tanaman bawang merah adalah penyakit moler. Saat ini pengendalian penyakit Moler masih bertumpu pada penggunaan kimia (Fungisida). Salah satu agen hayati yang sudah terbukti berperan ampuh sebagai pengendali hayati yaitu Trichoderma sp. Tujuan dari penelitian ini adalah (1) Untuk mengetahui pengaruh dan interaksi antara Trichoderma sp dan varietas bawang merah terhadap pengendalian penyakit moler dan hasil tanaman bawang merah (Allium ascalonicum L), (2) Untuk mengetahui jenis dan dosis …


Impact Of Seed Protein Alleles From Three Soybean Sources On Seed Composition And Agronomic Traits, Lillian F. Brzostowski, Timothy I. Pruski, James Specht, Brian W. Diers Aug 2017

Impact Of Seed Protein Alleles From Three Soybean Sources On Seed Composition And Agronomic Traits, Lillian F. Brzostowski, Timothy I. Pruski, James Specht, Brian W. Diers

Department of Agronomy and Horticulture: Faculty Publications

Evaluation of seed protein alleles in soybean populations showed that an increase in protein concentration is generally associated with a decrease in oil concentration and yield.

Soybean [Glycine max (L.) Merrill] meal is one of the most important plant-based protein sources in the world. Developing cultivars high in seed protein concentration and seed yield is a difficult task because the traits have an inverse relationship. Over two decades ago, a protein quantitative trait loci (QTL) was mapped on chromosome (chr) 20, and this QTL has been mapped to the same position in several studies and given the confirmed QTL …


Respons Pertumbuhan Dan Hasil Benih Kentang G0 Di Dataran Medium Terhadap Waktu Dan Cara Aplikasi Paklobutrazol, Nuzula Suci Azima, Anne Nuraini, Sumadi, Jajang Sauman Hamdani Aug 2017

Respons Pertumbuhan Dan Hasil Benih Kentang G0 Di Dataran Medium Terhadap Waktu Dan Cara Aplikasi Paklobutrazol, Nuzula Suci Azima, Anne Nuraini, Sumadi, Jajang Sauman Hamdani

Jurnal Kultivasi

Aplikasi paklobutrazol pada penanaman kentang di dataran medium dapat mengurangi sintesis giberelin yang menyebabkan penurunan hasil kentang. Efektifitas paklobutrazol tidak hanya dipengaruhi oleh konsentrasi, tetapi juga waktu dan cara aplikasinya. Tujuan penelitian ini adalah untuk memperoleh waktu dan cara aplikasi paklobutrazol yang memberikan pengaruh paling baik dalam meningkatkan hasil benih kentang G0 di dataran medium. Rancangan penelitian menggunakan Rancangan Acak Kelompok (RAK) Faktorial dengan 3 ulangan. Perlakuannya terdiri dari waktu aplikasi paklobutrazol yaitu 28, 35 dan 42 HST (Hari Setelah Tanam) dan cara aplikasi paklobutrazol yaitu disemprot ke daun, disiram ke media tanam dan kombinasi antara penyemprotan ke daun dan …


Cultivar, Season Extension, Fertilizer Trials Of Swiss Chard And Pedagogy Of Assessing Cultivars Using Technology, Chanelle Angeny Aug 2017

Cultivar, Season Extension, Fertilizer Trials Of Swiss Chard And Pedagogy Of Assessing Cultivars Using Technology, Chanelle Angeny

Electronic Theses and Dissertations

Abstract. Diversity of species is a cornerstone of horticulture, and the constant stream of new plant cultivars broadens the palette of options available to the industry. Fifteen Swiss chard (Beta vulgaris var. cicla) cultivars were evaluated during the fall/winter of 2014-2015 season (season 1) and 27 cultivars during the fall/winter of 2015-2016 season (season 2) to determine the best performing cultivars for production and landscape use for east Texas and the southeast by assessing survivability and yield. There was an increase in production of 3.0 ± 0.5 g per plant per harvest under the low tunnel. The cultivar …


Nebline, August 2017 Aug 2017

Nebline, August 2017

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Feature: Back-to-School Nutrition

Food & Health

Farm & Acreage

Pests & Wildlife

Horticulture

Early Childhood

4-H & Youth

and other extension news and events

Special pullout section: Lancaster County Super Fair 2017 Schedule & Map


Studies In Blackberry: Development And Implementation Of A Phenotyping Protocol For Blackberry Seedling Populations And Impact Of Time Of Day Of Harvest On Red Drupelet Reversion For University Of Arkansas Blackberry Genotypes, Melinda Yin Aug 2017

Studies In Blackberry: Development And Implementation Of A Phenotyping Protocol For Blackberry Seedling Populations And Impact Of Time Of Day Of Harvest On Red Drupelet Reversion For University Of Arkansas Blackberry Genotypes, Melinda Yin

Graduate Theses and Dissertations

There are two major public blackberry (Rubus L. subgenus rubus Watson) breeding programs in the United States: one at the University of Arkansas (UA) and another at the U.S. Department of Agriculture Agricultural Research Service Horticultural Crops Research Unit (USDA-ARS HCRU) based in Corvallis, OR. The germplasm and breeding objectives of these two breeding programs are diverse, but frequent collaboration necessitated a standardized method of characterizing plant and fruit traits. A phenotyping protocol for blackberry was developed at UA and implemented for two years on UA seedling populations. The protocol included plant traits (health, vigor, estimated crop load, peak bloom …


B. R. Wells Arkansas Rice Research Studies 2016, R. J. Norman, K.A. K. Moldenhauer Aug 2017

B. R. Wells Arkansas Rice Research Studies 2016, R. J. Norman, K.A. K. Moldenhauer

Arkansas Agricultural Experiment Station Research Series

No abstract provided.


Arkansas Wheat Cultivar Performance Tests 2016-2017, R. E. Mason, R. G. Miller, D. E. Moon, J. P. Kelley Aug 2017

Arkansas Wheat Cultivar Performance Tests 2016-2017, R. E. Mason, R. G. Miller, D. E. Moon, J. P. Kelley

Arkansas Agricultural Experiment Station Research Series

Wheat cultivar performance tests are conducted each year in Arkansas by the University of Arkansas System Division of Agriculture’s Arkansas Agricultural Experiment Station, Department of Crop, Soil and Environmental Sciences. The tests provide information to companies developing cultivars and marketing seed within the state and aid the Arkansas Cooperative Extension Service in formulating cultivar recommendations for small-grain producers.


Molecular And Culture-Based Assessment Of Root/Crown Rot Fungal/Oomycete Complex Of Bean In Mozambique, Suzana Vanessa Ismael Fernandes Jul 2017

Molecular And Culture-Based Assessment Of Root/Crown Rot Fungal/Oomycete Complex Of Bean In Mozambique, Suzana Vanessa Ismael Fernandes

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Dry edible beans (Phaseolus vulgaris) play an important role in food security, alleviating hunger and malnutrition and adding value to the economy in Mozambique. Recently, root/crown rot (RCR) has caused yield losses in bean fields in Mozambique. A diverse taxa of fungi and oomycetes have been associated with RCR. However, in Mozambique little information on root rot is available. The purpose of this study is to use Illumina sequencing platform, polymerase chain reaction (PCR) and culture-based methods to identify the primary pathogens associated with RCR in Mozambique. A total of 88 plants showing symptoms of RCR disease were …


Positioning Of The Scrambled Receptor Requires Udp-Glc:Sterol Glucosyltransferase 80b1 In Arabidopsis Roots, Victoria G. Pook, Meera Nair, Kookhui Ryu, James C. Arpin, John Schiefelbein, Kathrin Schrick, Seth Debolt Jul 2017

Positioning Of The Scrambled Receptor Requires Udp-Glc:Sterol Glucosyltransferase 80b1 In Arabidopsis Roots, Victoria G. Pook, Meera Nair, Kookhui Ryu, James C. Arpin, John Schiefelbein, Kathrin Schrick, Seth Debolt

Horticulture Faculty Publications

The biological function of sterol glucosides (SGs), the most abundant sterol derivatives in higher plants, remains uncertain. In an effort to improve our understanding of these membrane lipids we examined phenotypes exhibited by the roots of Arabidopsis (Arabidopsis thaliana) lines carrying insertions in the UDP-Glc:sterol glucosyltransferase genes, UGT80A2 and UGT80B1. We show that although ugt80A2 mutants exhibit significantly lower levels of total SGs they are morphologically indistinguishable from wild-type plants. In contrast, the roots of ugt80B1 mutants are only deficient in stigmasteryl glucosides but exhibit a significant reduction in root hairs. Sub-cellular investigations reveal that the plasma membrane …


Nebline, July 2017 Jul 2017

Nebline, July 2017

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Feature: The Road to Great (and Safe!) Grilling

Food & Health

Farm & Acreage

Pests & Wildlife

Horticulture

Early Childhood

4-H & Youth

and other extension news and events


Protocol For Enrichment Of The Membrane Proteome Of Mature Tomato Pollen, Puneet Paul, Palak Chaturvedi, Anida Mesihovic, Arindam Ghatak, Wolfram Weckwerth, Enrico Schleiff Jun 2017

Protocol For Enrichment Of The Membrane Proteome Of Mature Tomato Pollen, Puneet Paul, Palak Chaturvedi, Anida Mesihovic, Arindam Ghatak, Wolfram Weckwerth, Enrico Schleiff

Department of Agronomy and Horticulture: Faculty Publications

We established and elaborated on a method to enrich the membrane proteome of mature pollen from economically relevant crop using the example of Solanum lycopersicum (tomato). To isolate the pollen protein fraction enriched in membrane proteins, a high salt concentration (750 mM of sodium chloride) was used. The membrane protein-enriched fraction was then subjected to shotgun proteomics for identification of proteins, followed by in silico analysis to annotate and classify the detected proteins.


Hanford Ffa Ornamental Horticulture Unit Master Plan, Savanah Diane Rhine, Russell Alan Zimmerman Jun 2017

Hanford Ffa Ornamental Horticulture Unit Master Plan, Savanah Diane Rhine, Russell Alan Zimmerman

Agricultural Education and Communication

This project is intended to develop a more functional plan for the Ornamental Horticulture (OH) Unit at the Hanford Agriculture Program. The ag program combines all three high schools in Hanford resulting in over 1,000 students; however, a majority of these students are not in the OH Career Pathway due to a lack of a constant, fully functional unit. As a comprehensive agriculture program, it is crucial that it incorporates all aspects of agriculture, not just animal science and agricultural mechanics.

This project will provide the Hanford agriculture program with a plan to be implemented so that they may have …


Nebline, June 2017 Jun 2017

Nebline, June 2017

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Feature: What's Biting You?

Food & Health

Farm & Acreage

Pests & Wildlife

Horticulture

Early Childhood

4-H & Youth

and other extension news and events


Transcriptomic Resources For The Medicinal Legume Mucuna Pruriens: De Novo Transcriptome Assembly, Annotation, Identification And Validation Of Est-Ssr Markers, N. Sathyanarayana, Ranjith Kumar Pittala, Pankaj Kumar Tripathi, Ratan Chopra, Heikham Russiachand Singh, Vikas Belamkar, Pardeep Kumar Bhardwaj, Jeff J. Doyle, Ashley N. Egan May 2017

Transcriptomic Resources For The Medicinal Legume Mucuna Pruriens: De Novo Transcriptome Assembly, Annotation, Identification And Validation Of Est-Ssr Markers, N. Sathyanarayana, Ranjith Kumar Pittala, Pankaj Kumar Tripathi, Ratan Chopra, Heikham Russiachand Singh, Vikas Belamkar, Pardeep Kumar Bhardwaj, Jeff J. Doyle, Ashley N. Egan

Department of Agronomy and Horticulture: Faculty Publications

Background:

The medicinal legume Mucuna pruriens (L.) DC. has attracted attention worldwide as a source of the anti-Parkinson’s drug L-Dopa. It is also a popular green manure cover crop that offers many agronomic benefits including high protein content, nitrogen fixation and soil nutrients. The plant currently lacks genomic resources and there is limited knowledge on gene expression, metabolic pathways, and genetics of secondary metabolite production. Here, we present transcriptomic resources for M. pruriens, including a de novo transcriptome assembly and annotation, as well as differential transcript expression analyses between root, leaf, and pod tissues. We also develop microsatellite markers …


A Comprehensive Analysis Of Alternative Splicing In Paleopolyploid Maize, Wenbin Mei, Sanzhen Liu, James C. Schnable, Cheng-Ting Yeh, Nathan M. Springer, Patrick S. Schnable, William Brad Barbazuk May 2017

A Comprehensive Analysis Of Alternative Splicing In Paleopolyploid Maize, Wenbin Mei, Sanzhen Liu, James C. Schnable, Cheng-Ting Yeh, Nathan M. Springer, Patrick S. Schnable, William Brad Barbazuk

Department of Agronomy and Horticulture: Faculty Publications

Identifying and characterizing alternative splicing (AS) enables our understanding of the biological role of transcript isoform diversity. This study describes the use of publicly available RNA-Seq data to identify and characterize the global diversity of AS isoforms in maize using the inbred lines B73 and Mo17, and a related species, sorghum. Identification and characterization of AS within maize tissues revealed that genes expressed in seed exhibit the largest differential AS relative to other tissues examined. Additionally, differences in AS between the two genotypes B73 and Mo17 are greatest within genes expressed in seed. We demonstrate that changes in the level …