Horticulture Commons^™

Sequences Involved In Plant Yield And Methods Of Using, Harkamal Walia, Dante Placido, Thomas E. Clemente

Department of Agronomy and Horticulture: Faculty Publications

Nucleic acid sequences involved in plant yield are provided, as are methods of using such nucleic acid sequences .

Identification Of Quantitative Trait Loci Conferring Resistance To Tan Spot In A Biparental Population Derived From Two Nebraska Hard Red Winter Wheat Cultivars, Gayan K. Kariyawasam, Waseem Hussain, Amanda Easterly, Mary Guttieri, Vikas Belamkar, Jesse Poland, Jorge Venegas, Stephen Baenziger, Francois Marais, Jack B. Rasmussen, Zhaohui Liu

Department of Agronomy and Horticulture: Faculty Publications

Tan spot, caused by Pyrenophora triticirepentis (Ptr), is a destructive foliar disease in all types of cultivated wheat worldwide. Genetics of tan spot resistance in wheat is complex, involving insensitivity to fungal-produced necrotrophic effectors (NEs), major resistance genes, and quantitative trait loci (QTL) conferring race-nonspecific and race-specific resistance. The Nebraska hard red winter wheat (HRWW) cultivar ‘Wesley’ is insensitive to Ptr ToxA and highly resistant to multiple Ptr races, but the genetics of resistance in this cultivar is unknown. In this study, we used a recombinant inbred line (RIL) population derived from a cross between Wesley and another …

Improving An Active-Optical Reflectance Sensor Algorithm Using Soil And Weather Information, G. M. Bean, N. R. Kitchen, J. J. Camberato, R. B. Ferguson, F. G. Fernandez, D. W. Franzen, C. A. M. Laboski, E. D. Nafziger, J. E. Sawyer, P. C. Scharf, J. Schepers, J. S. Shanahan

Department of Agronomy and Horticulture: Faculty Publications

Active-optical reflectance sensors (AORS) use light reflectance characteristics from a crop canopy as an indicator of the plant’s N health. However, studies have shown AORS algorithms used in conjunction with measured reflectance characteristics for corn (Zea mays L.) N fertilizer rate recommendations are not consistently accurate. Our objective was to determine if soil and weather information could be utilized with an AORS algorithm developed at the University of Missouri (ALG_MU) to improve in-season (~V9 corn development stage) N fertilizer recommendations. Nitrogen response trials were conducted across eight states over three growing seasons, totaling 49 sites with soils …

Active-Optical Reflectance Sensing Corn Algorithms Evaluated Over The United States Midwest Corn Belt, G. M. Bean, N. R. Kitchen, J. J. Camberato, R. B. Ferguson, F. G. Fernandez, D. W. Franzen, C. A. M. Laboski, E. D. Nafziger, J. E. Sawyer, P. C. Scharf, J. Schepers, J. S. Shanahan

Department of Agronomy and Horticulture: Faculty Publications

Uncertainty exists with corn (Zea mays L.) N management due to year-to-year variation in crop N need, soil N supply, and N loss from leaching, volatilization, and denitrification. Activeoptical reflectance sensing (AORS) has proven effective in some fields for generating N fertilizer recommendations that improve N use efficiency, but locally derived (e.g., within a US state) AORS algorithms have not been tested simultaneously across a broad region. The objective of this research was to evaluate locally developed AORS algorithms across the US Midwest Corn Belt region for making in-season corn N recommendations. Forty-nine N response trials were conducted across …

Lignocellulosic-Based Bioenergy And Water Quality Parameters: A Review, Bharat Sharma Acharya, Humberto Blanco-Canqui

Department of Agronomy and Horticulture: Faculty Publications

High rates of crop residue removal as biofuel feedstocks could increase losses of nonpoint source pollutants, negatively affecting water quality. An alternative to residue removal can be growing dedicated bioenergy crops such as warm season grasses (WSGs) and short-rotation woody crops (SRWCs). Yet, our understanding of the implications of growing dedicated bioenergy crops on water quality is limited. Thus, we (i) synthesized and compared the impacts of crop residue removal, WSGs, and SRWCs on water quality parameters (i.e., sediment and nutrient runoff, and nutrient leaching) and (ii) identified research gaps for growing dedicated energy crops. Literature indicates that residue removal …

Hops On A Quarter-Acre, Stacy A. Adams

Department of Agronomy and Horticulture: Faculty Publications

This publication presents information on how to develop a quarter-acre hop yard, suitably sized to explore the unique production methods associated with this specialty crop. Emerging growers with an interest in growing hop should gain knowledge about its unique plant growth and development, culture, common pests and diseases, and harvest handling. Using information in this publication, growers should be able to experiment with hop production and harvesting so that they can develop a measured vision for future production of this crop.

Epigenomic Plasticity Of Arabidopsis Msh1 Mutants Under Prolonged Cold Stress, Sunil Kumar Kenchanmane Raju, Mon-Ray Shao, Yashitola Wamboldt, Sally A. Mackenzie

Department of Agronomy and Horticulture: Faculty Publications

Dynamic transcriptional and epigenetic changes enable rapid adaptive benefit to environmental fluctuations. However, the underlying mechanisms and the extent to which this occurs are not well known. MutS Homolog 1 (MSH1) mutants cause heritable developmental phenotypes accompanied by modulation of defense, phytohormone, stress‐response, and circadian rhythm genes, as well as heritable changes in DNA methylation patterns. Consistent with gene expression changes, msh1 mutants display enhanced tolerance for abiotic stress including drought and salt stress, while showing increased susceptibility to freezing temperatures. Despite changes in defense and biotic stress‐response genes, msh1 mutants showed increasing susceptibility to the bacterial pathogen Pseudomonas syringae. …

Can Bangladesh Produce Enough Cereals To Meet Future Demand?, J. Timsina, J. Wolf, N. Guilpart, L G. J. Van Bussel, P. Grassini, J. Van Wart, A. Hossain, H. Rashid, S. Islam, M. K. Van Ittersum

Department of Agronomy and Horticulture: Faculty Publications

Bangladesh faces huge challenges in achieving food security due to its high population, diet changes, and limited room for expanding cropland and cropping intensity. The objective of this study is to assess the degree to which Bangladesh can be self-sufficient in terms of domestic maize, rice and wheat production by the years 2030 and 2050 by closing the existing gap (Yg) between yield potential (Yp) and actual farm yield (Ya), accounting for possible changes in cropland area. Yield potential and yield gaps were calculated for the three crops using well-validated crop models and site-specific weather,management and soil data, and upscaled …

Parallel Altitudinal Clines Reveal Trends In Adaptive Evolution Of Genome Size In Zea Mays, Paul Bilinski, Patrice S. Albert, Jeremy J. Berg, James A. Birchler, Mark N. Grote, Anne Lorant, Juvenal Quezada, Kelly Swarts, Jinliang Yang, Jeffrey Ross-Ibarra

Department of Agronomy and Horticulture: Faculty Publications

While the vast majority of genome size variation in plants is due to differences in repetitive sequence, we know little about how selection acts on repeat content in natural populations. Here we investigate parallel changes in intraspecific genome size and repeat content of domesticated maize (Zea mays) landraces and their wild relative teosinte across altitudinal gradients in Mesoamerica and South America. We combine genotyping, low coverage whole-genome sequence data, and flow cytometry to test for evidence of selection on genome size and individual repeat abundance. We find that population structure alone cannot explain the observed variation, implying that …

Genomic Prediction Accuracy For Switchgrass Traits Related To Bioenergy Within Differentiated Populations, Jason D. Fiedler, Christina Lanzatella, Serge J. Edme, Nathan A. Palmer, Gautam Sarath, Rob Mitchell, Christian M. Tobias

Department of Agronomy and Horticulture: Faculty Publications

Background: Switchgrass breeders need to improve the rates of genetic gain in many bioenergy-related traits in order to create improved cultivars that are higher yielding and have optimal biomass composition. One way to achieve this is through genomic selection. However, the heritability of traits needs to be determined as well as the accuracy of prediction in order to determine if efficient selection is possible.

Results: Using five distinct switchgrass populations comprised of three lowland, one upland and one hybrid accession, the accuracy of genomic predictions under different cross-validation strategies and prediction methods was investigated. Individual genotypes were collected using GBS …

Method For The Production Of High Saturated, Low Polyunsaturated Soybean Oil, Thomas E. Clemente, Hyunwoo Park, Edgar B. Cahoon, Hanh Nguyen

Department of Agronomy and Horticulture: Faculty Publications

Methods of genetically modifying soybean plants to alter the fatty acid properties of the oil are described.

Characterizing Nitrogen Loss And Greenhouse Gas Flux Across An Intensification Gradient In Diversified Vegetable Systems, Debendra Shrestha

Theses and Dissertations--Plant and Soil Sciences

The area of vegetable production is growing rapidly world-wide, as are efforts to increase production on existing lands in these labor- and input-intensive systems. Yet information on nutrient losses, greenhouse gas emissions, and input efficiency is lacking. Sustainable intensification of these systems requires knowing how to optimize nutrient and water inputs to improve yields while minimizing negative environmental consequences. This work characterizes soil nitrogen (N) dynamics, nitrate (NO₃¯) leaching, greenhouse gas emissions, and crop yield in five diversified vegetable systems spanning a gradient of intensification that is characterized by inputs, tillage and rotational fallow periods. The study systems …

Cc-Type Glutaredoxins Mediate Plant Response And Signaling Under Nitrate Starvation In Arabidopsis, Ji-Yul Jung, Ji Hoon Ahn, Daniel P. Schachtman

Department of Agronomy and Horticulture: Faculty Publications

Background: Nitrogen is an essential nutrient in plants. Despite the importance of nitrogen for plant growth and agricultural productivity, signal transduction pathways in response to nitrate starvation have not been fully elucidated in plants.

Results: Gene expression analysis and ectopic expression were used to discover that many CC-type glutaredoxins (ROXYs) are differentially expressed in response to nitrate deprivation. A gain-of-function approach showed that ROXYs may play a role in nutrient sensing through the regulation of chlorophyll content, root hair growth, and transcription of nitrate-related genes such as NRT2.1 under low or high nitrate conditions. Reactive oxygen species (ROS) …

Risks And Opportunities Of Gm Crops: Bt Maize Example, Andrea K. Carzoli, Siddique I. Aboobucker, Leah L. Sandall, Thomas T. Lubberstedt, Walter P. Suza

Department of Agronomy and Horticulture: Faculty Publications

The anticipated world population growth emphasizes a need to produce more food on less land. Cutting-edge technologies, including genetic engineering, can help to develop improved crop varieties and protect natural resources. In spite of the potential for genetically-modified (GM) crops to make crop production more efficient, they remain a polarizing issue due to safety concerns. This paper provides an overview of the risk assessment process. The safety of Bacillus thuringiensis (Bt) proteins is used as an example for how risk assessment is applied to GM crops. Risks associated with GM crops have proven to be low to non-existent. Developing countries …

Plant Discrimination By Support Vector Machine Classifier Based On Spectral Reflectance, Saman Akbarzadeh, Arie J. Paap, Selam T. Ahderom, Beniamin Apopei, Kamal Alameh

Research outputs 2014 to 2021

Support Vector Machine (SVM) algorithms are developed for weed-crop discrimination and their accuracies are compared with a conventional data-aggregation method based on the evaluation of discrete Normalised Difference Vegetation Indices (NDVIs) at two different wavelengths. A testbed is especially built to collect the spectral reflectance properties of corn (as a crop) and silver beet (as a weed) at 635 nm, 685 nm, and 785 nm, at a speed of 7.2 km/h. Results show that the use of the Gaussian-kernel SVM method, in conjunction with either raw reflected intensities or NDVI values as inputs, provides better discrimination accuracy than that attained …

Use Of An Alternative Natural Weed Suppressant: Effects Of Parboiled Rice Hull Mulch On The Growth Of Container Weeds, Amy R. Fields-Taylor, Vanessa Slinger-Friedman

The Kennesaw Journal of Undergraduate Research

The Chattahoochee Nature Center (CNC) is one of the leading educational centers in Georgia about the ecology of the Chattahoochee River. Due to lack of man power, keeping down the weeds in the CNC plant nursery is one of those tasks that often gets left undone. The nursery becomes overgrown with invasive weed species. Understandably, they must sometimes resort to the use of herbicides, such as Roundup®, to keep the hundreds of native and endangered species of plants housed at CNC from being choked out by invasive weeds. This study tests the ability to suppress weed growth by use of …

Aplikasi Chitosan Untuk Meningkatkan Hasil Benih Kentang G0 (Solanum Tuberosum L.) Kultivar Granola Pada Berbagai Jenis Media Tanam, Anne Nuraini, Jajang Sauman Hamdani, Erni Suminar, Dian Ardiansyah

Jurnal Kultivasi

Salah satu kendala dalam produksi kentang di Indonesia adalah rendahnya mutu benih yang digunakan. Untuk mengatasi hal tersebut penyediaan benih kentang dilakukan dengan kultur jaringan, dengan menghasilkan benih Go. Percobaan ini bertujuan untuk mengetahui efek aplikasi chitosan terhadap hasil benih kentang G0 kultivar Granola pada berbagain jenis media tanam. Percobaan dilaksanakan dari Februari 2012 sampai Mei 2012 di screen house Kebun Percobaan Ciparanje Faperta UNPAD, Jatinangor, dengan ketinggian tempat ±750 m dpl. Percobaan memakai Rancangan Petak Terbagi dengan tiga ulangan. Petak utama adalah komposisi media tanam terdiri dari empat taraf, yaitu tanah + sekam, tanah + sekam + pupuk kotoran …

Pengaruh Pemberian Urine Kelinci Dan Air Kelapa Terhadap Pertumbuhan Rimpang Dan Kandungan Minyak Atsiri Jahe Merah, Kusnadi, Inur Tivani

Jurnal Kultivasi

Bahan alami yang dapat digunakan sebagai sumber pemberian Zat Pengatur Tumbuh (ZPT) diantaranya adalah urine kelinci dan air kelapa. Pemberian urine kelinci, air kelapa dan kom-binasinya diharapkan dapat memberikan pengaruh terhadap pertumbuhan rimpang dan kandungan minyak atsiri jahe merah. Percobaan telah dilaksanakan pada bulan Maret sampai Oktober 2017 di Kebun Percobaan Prodi Farmasi Politeknik Harapan Bersama. Perlakuan yang digunakan adalah beberapa konsentrasi urine kelinci, air kelapa dan kombinasi urine kelinci dengan air kelapa. Rancangan percobaan yang digunakan adalah dengan Rancangan Acak Lengkap (RAL), terdapat 9 perlakuan yang diulang 3 kali. Perlakuan dengan urine kelinci terdiri dari 3 level, yaitu u0 …

Pembentukan Ubi Mikro Kentang (Solanum Tuberosum L.) Pada Berbagai Komposisi Media In Vitro, Inneke Amalia, Anne Nuraini, Sumadi, Syariful Mubarok, Erni Suminar

Jurnal Kultivasi

Permasalahan umum terkait pada produksi kentang adalah penggunaan benih sumber yang kurang bermutu dan mengalami kemunduran benih. Penelitian bertujuan untuk menentukan zat penghambat tumbuh coumarin, jasmonic acid dan paklobutrazol yang tepat untuk pertumbuhan stek dan pembentukan ubi mikro kentang secara in vitrosehingga dapat digunakan untuk penyediaan bibit berkualitas. Percobaan dilaksanakan di Laboratorium Kultur Jaringan Teknologi Benih Fakultas Pertanian Universitas Padjadjaran Jatinangor, Sumedang, pada bulan Oktober 2015 sampai Mei 2016. Metode percobaan yang digunakan adalah Rancangan Acak Lengkap (RAL) yang merupakan kombinasi dari media, retardan coumarin (105 mg L-1 dan 120 mg L-1), paklobutrazol (0.4 mg L-1 dan 1 mg L-1) …

Horticulture For Pollinator Conservation, Carter M. Westerhold

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Pollinators worldwide are declining. Consequently, the agricultural and ecological services these insects provide are in danger of being lost. Land use intensification, via urbanization, has greatly influenced this decline in pollinators. Luckily, through targeted horticultural practices, stable populations of pollinators can be sustained within urban areas. The horticultural practices of planting diverse floral resources and managing pollinator habitat in urban areas can sustain these populations. Two studies were conducted with the intent to identify horticultural knowledge gaps that could be reduced to aid in pollinator conservation efforts. First, a study to compare Nebraska native and non-native ornamental plants was conducted. …

Arkansas Soybean Performance Tests 2017, R. D. Bond, J. A. Still, D. G. Dombek

Arkansas Agricultural Experiment Station Research Series

Soybean variety and strain performance tests are conducted each year in Arkansas by the University of Arkansas System Division of Agriculture’s Arkansas Crop Variety Improvement Program. The tests provide information to companies developing varieties and/or marketing seed within the State, and aid the Arkansas Cooperative Extension Service in formulating variety recommendations for soybean producers.

Shallow Aggregate Ebb-And-Flow System For Greenhouse Lettuce Production, Joseph Chidiac

Graduate Theses and Dissertations

A novel soilless technique for the production of lettuce was developed and evaluated for its viability for ornamental greenhouse growers adapting their ebb-and-flood irrigation benching systems to diversify into growing lettuce, without having to purchase the conventional nutrient film technique (NFT) or deep flow technique (DFT) hydroponic systems. The experimental design was a three by four factorial, with three treatments for aggregate depth (19, 38, and 57 mm) and four treatments for irrigation frequency (once every 1, 2, 4, or 8 hours), for a total of twelve treatment combinations. Each treatment was replicated three times in a randomized complete block …

New Technologies For Evaluating Putting Green Surface Characteristics, Daniel Patrick O'Brien

Graduate Theses and Dissertations

Golf course putting greens require a high level of inputs predicated on timely, well informed decisions. Putting green quality is ultimately defined by performance of the turfgrass, and this performance encompasses both (i) the health and vitality of the turfgrass plants, and (ii) the ability of the turfgrass to exist as a playing surface, as it interacts with the golf ball. For golf course superintendents, accurately and efficiently assessing moisture levels and nutrient status are critical for guiding maintenance practices. This research sought to examine new ways for measuring each of these parameters, and compared them to ground-truth data and/or …

Evaluation Of Insecticide Seed Treatments To Protect Rice (Oryza Sativa) Against Various Herbicides, Steven Michael Martin

Graduate Theses and Dissertations

The increase in herbicide-resistant weeds in Arkansas crop fields has led to the need for new herbicide modes of action for use in all crops. This need has led to the introduction of technologies that can be devastating to conventional rice crops. Field observation, noted that insecticide seed treatments used in rice could potentially reduce the effects of off-target movement of herbicides onto rice crops and possibly reduce the negative effects of some herbicides applied directly to rice. Research was conducted to determine if insecticide seed treatments could reduce the harmful effects of drift from imazethapyr and glyphosate onto conventional …

Nebline, November/December 2017

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Feature: 4-H’ers Grow Into True Leaders through Service

Food & Health

Farm & Acreage

Pests & Wildlife

Horticulture

Early Childhood

4-H & Youth

and other extension news and events

Better Health Through Horticulture: Using Horticulture To Influence Behavior And Reduce Stress, Rachel Ochylski

All NMU Master's Theses

Horticultural intervention in the form of gardening workshops connect participants to nature while they nurture another living organism. Horticultural intervention provides opportunities to socialize and engage in a meaningful activity, which have been recognized as helpful in the treatment of common mental health difficulties such as depression and anxiety. There is a lack of experimental studies based on quantitative data that focus on the effects of horticulture on holistic human health. The author evaluated the effects of a horticultural intervention on two separate groups, older adults and college students. The behavioral effects of engaging in gardening activities were evaluated using …

Impact Of Preemergent Herbicides, Mowing Height, And Fertilization On Centipedegrass Root Architecture And Drought Tolerance, Mike J. Adams

LSU Master's Theses

Mowing, N fertilization and the application of preemergence herbicides (PRE) are cultural practices performed on centipedegrass to improve overall turf quality. It is posited that increasing mowing height and application of fertilizers can lead to greater turfgrass rooting and increase drought survival; while the application of PRE is reported to potentially have negative impacts on rooting. At two locations in Louisiana, studies examining the effects of these practices on centipedegrass rooting and drought tolerance were conducted.

In the first 11-week study conducted, centipedegrass was treated with dithiopyr, pendimethalin, prodiamine, simazine, or indaziflam at the manufacturers’ labeled rates. During the 11-wk …

Optimization Of Overhead Irrigation In Relation To Irrigation Water Use Efficiency In The Louisiana Nursery Industry, Mark A. Wilson

LSU Master's Theses

Irrigation efficiency is an essential component of nursery production in the United States. To increase productivity of Louisiana growers, a series of studies were conducted to evaluate current nursery water practices. The objectives were to determine current irrigation practices; evaluate actual water usage; and compare nursery media for water utilization. A mailed survey determined that the majority of growers used can yard production (63%), overhead irrigation (79%), had no irrigation manager (82%) and did not collect/reuse water(61%); 50% do not test/calibrate their irrigation system. Based on this information, five nurseries using overhead irrigation were selected to determine water application and …

Substantial Contribution Of Genetic Variation In The Expression Of Transcription Factors To Phenotypic Variation Revealed By Erd-Gwas, Hung-Ying Lin, Qiang Liu, Xiao Li, Jinliang Yang, Sanzhen Liu, Yinlian Huang, Michael J. Scanlon, Dan Nettleton, Patrick S. Schnable

Department of Agronomy and Horticulture: Faculty Publications

Background: There are significant limitations in existing methods for the genome-wide identification of genes whose expression patterns affect traits.

Results: The transcriptomes of five tissues from 27 genetically diverse maize inbred lines were deeply sequenced to identify genes exhibiting high and low levels of expression variation across tissues or genotypes. Transcription factors are enriched among genes with the most variation in expression across tissues, as well as among genes with higher-than-median levels of variation in expression across genotypes. In contrast, transcription factors are depleted among genes whose expression is either highly stable or highly variable across genotypes. We developed a …

Estimation Of Irrigation Requirements For Drip-Irrigated Maize In A Sub-Humid Climate, Liu Yang, Hai-Shun Yang, Jiu-Sheng Li, Yan-Feng Li, Hai-Jun Yan

Department of Agronomy and Horticulture: Faculty Publications

Drip-irrigation is increasingly applied in maize (Zea mays L.) production in sub-humid region. It is critical to quantify irrigation requirements during different growth stages under diverse climatic conditions. In this study, the Hybrid-Maize model was calibrated and applied in a sub-humid Heilongjiang Province in Northeast China to estimate irrigation requirements for drip irrigated maize during different crop physiological development stages and under diverse agro-climatic conditions. Using dimensionless scales, the whole growing season of maize was divided into diverse development stages from planting to maturity. Drip-irrigation dates and irrigation amounts in each irrigation event were simulated and summarized in 30-year simulation …