Botany Commons^™

Assessing The Role Of Conspecific Attraction In Habitat Restoration For Henslow’S Sparrows In Iowa, Jennifer A. Vogel, Rolf R. Koford, David L. Otis

The Prairie Naturalist

The presence of conspecific individuals may provide important cues about habitat quality for territorial songbirds. We tested the ability of a conspecific song playback system to attract Henslow’s sparrows to previously unoccupied restored habitat. We successfully attracted Heslow’s sparrows to 3 of 7 treatment plots using conspecific song playbacks and we found no Henslow’s sparrows in control plots. The addition of social cues using playback systems in restored grassland habitats may aid conservation efforts of Henslow’s sparrows to available habitat.

Notes: River Otters Use Agricultural Field Along The Turtle Riveri In Eastern North Dakota As Crossover And Latrine Area, Maggie D. Triska, Steven C. Loughry, Thomas L. Sergass

The Prairie Naturalist

Recently, the Nearctic river otter (Lontra canadensis) has been re-colonizing portions of eastern North Dakota. The landscape in eastern North Dakota is dominated by agricultural fields and pastures, habitats which have received little research attention related to otter habitat use. During 2008, we searched shorelines to detect otter latrines, which is a common method for determining otter presence. Generally, latrines are locations along bodies of water where otters deposit scats, urine, and glandular secretions for olfactory communication, and groom, wrestle, and play, which may mat vegetation. In the northeastern United States, inland riverine system studies have shown latrines …

Calodium Hepaticum In White-Tailed Jackrabbits In South Dakota, Dustin J. Schaible, Charles D. Dieter, Regg D. Neiger, Michael B. Hildreth

The Prairie Naturalist

White-tailed jackrabbits (Lepus townsendii) are common on the prairie, and an important species in prairie food webs (Lim 1987). Although it has been suggested that jackrabbits have cyclic populations (Donoho 1972, Gross et al. 1974, Anderson and Shumar 1986), there is concern that a general downward trend exists in populations in the Northern Great Plains (Feldhamer et al. 2003). Disease incidence in white-tailed jackrabbits is poorly known (Feldhamer et al. 2003), but may be an important factor in population changes. Tularemia, a disease caused by bacteria (Francisella tularensis), occurs throughout the Northern Hemisphere and can affect many mammals including hares, …

Resource Selection By Elk At Two Spatial Scales In The Black Hills, South Dakota, Mark A. Rumble, R. Scott Gamo

The Prairie Naturalist

Understanding resource selection by elk (Cervus elaphus) at multiple spatial scales may provide information that will help resolve the increasing number of resource conflicts involving elk. We quantified vegetation at 412 sites where the precise location of elk was known by direct observation and 509 random sites in the Black Hills of South Dakota during 1998– 2001. We obtained stand level variables from geographic information system coverages for a 250 m buffer around elk and random sites. We used classification and regression trees to simultaneously evaluate environmental thresholds of resources selected by feeding and bedded elk at the site and …

Multiple Bats Entangled On Cactus, Jon C. Pigage, Richard L. Bunn

The Prairie Naturalist

Accidental deaths of bats by entanglement on plants and barbed wire are common (McNicholl 1988, Norquay et al. 2010). It has been hypothesized these incidents involve miscalculations by bats on how close they fly to plants or barbed wire or when chasing insects highly concentrated around vegetation (Norquay et al. 2010). Once the bats hit the plants or barbed wire, they become entangled and or impaled while struggling to free themselves. The earliest reports involved little brown bats (Myotis lucifugus) and unidentified bats entangled on burdock, Arctium sp. (Lyon 1925, Little 1925). Additional reports of bats becoming entangled in plants …

First Record Of The Least Weasel In The Black Hills Of South Dakota, Tim R. Mullican

The Prairie Naturalist

The least weasel (Mustela nivalis) is a circumboreal species, occurring in North America from Alaska to the Appalachian Mountains (Jones et al. 1983). In the Great Plains, the least weasel recently expanded its range southward through Nebraska (Benedict et al. 2000) and Kansas (Choate et al. 1979, Bailey and Terman 1986) into Oklahoma (Clark and Clark 1988). Also, in recent decades, the least weasel has expanded from eastern and central Nebraska into western Nebraska (Benedict et al. 2000). In South Dakota, least weasels have been previously reported from the eastern 3/4 of the state (Jones et al. 1983, Higgins et …

Phragmites Australis In South Dakota: Historical Distribution And Environment, Carol A. Johnston, Kayla L. Miller

The Prairie Naturalist

Common reed, Phragmites australis, has long been a component of Northern Plains wetlands, but impending invasion by the non-native P. australis haplotype M may displace native haplotypes in the future. To increase understanding of historical Phragmites occurrence, we developed a geographic information system (GIS) protocol to improve the georeferencing of specimens from South Dakota herbaria, and mapped the distribution of Phragmites relative to geology, physiographic regions, and water bodies. There were 91 Phragmites herbarium specimens from South Dakota and adjacent Wyoming. Phragmites collections occurred in nearly all physiographic regions of the state, with concentrations occurring in the Prairie Coteau of …

Crustaceous Zooplankton Transfer Between A Floodplain Wetland And The Missouri River, Shannon J. Fisher

The Prairie Naturalist

Floodplain interactions are a critical riverine ecosystem function, including zooplankton transfer. Floodplain alternations have had an assumed impact on zooplankton productivity. I assessed floodplain wetland and main channel densities of crustaceous zooplankton, alluding to organism transfer in the Missouri River, North Dakota. Significant t-test differences (P < 0.05) were present between backwater and channel habitat zooplankton densities in 83, 75, 83, and 50% of the sample periods for cyclopoid copepods, copepod nauplii, Daphnia spp., and Bosmina spp. respectively, suggesting the presence of uncoupled zooplankton dynamics during portions of each annual cycle. Two relationships with increased flows were found, including a biologically significant decrease (P = 0.09) of backwater copepod nauplii numbers and a significant increase (P = 0.02) in the channel density of Daphnia spp. During the highest flow periods, fewer significant differences in zooplankton densities were present between the backwater and channel habitats, indicating moderate homogenization.

Habitat Selection By Female Swift Foxes (Vulpes Velox) During The Pup- Rearing Season, Indrani Sasmal, Jonathan A. Jenks, Troy W. Grovenburg, Shubham Datta, Greg. M. Schroeder, Robert W. Klaver, Kevin M. Honness

The Prairie Naturalist

The swift fox (Vulpes velox) was historically distributed in western South Dakota including the region surrounding Badlands National Park (BNP). The species declined during the mid-1800s, largely due to habitat loss and poisoning targeted at wolves (Canis lupis) and coyotes (C. latrans). Only a small population of swift foxes near Ardmore, South Dakota persisted. In 2003, an introduction program was initiated at BNP with swift foxes translocated from Colorado and Wyoming. We report on habitat use by female swift foxes during the pup-rearing season (May–July) in 2009. Analyses of location data from 13 radiomarked female foxes indicated disproportional use (P < 0.001) of some habitats relative to their availability within swift fox home ranges. Swift foxes used grassland (ŵ = 1.01), sparse vegetation (ŵ = 1.43) and prairie dog towns (ŵ = 1.18) in proportion to their availability, whereas they were less likely to use woodland (ŵ = 0.00), shrubland (ŵ = 0.14), pasture/agricultural-land (ŵ = 0.25) and development (ŵ = 0.16) relative to availability. Swift foxes typically are located in habitats that provide greater visibility, such as shortgrass prairie and areas with sparse vegetation; which allow detection of approaching coyotes (e.g., primary predator of swift foxes).

Distribution Of Crayfish Species In Select North Dakota Streams, Cari-Ann Hayer, Terrance L. Velazquez, Mclain S. Johnson, Brian Graeb

The Prairie Naturalist

Crayfish have an integral role in aquatic ecosystems, serving as herbivores, predators, detritivores, and prey for fishes and other aquatic and terrestrial animals (Momot 1995, Taylor et al. 1996, Martin 1997). Many crayfish populations are currently declining as a result of habitat alteration (Taylor et al. 1996) and invasive predators (e.g., rusty crayfish Orconectes rusticus [Girard; Lodge et al. 2000]). Knowledge of crayfish distribution and biology in North America and specifically North Dakota is sparse or lacking (Taylor et al. 1996) and baseline information is necessary to identify effects of anthropogenic alterations. Early inventories documented 3 crayfish species in North …

Screening Synteny Blocks In Pairwise Genome Comparisons Through Integer Programming, Haibao Tang, Eric Lyons, Brent S. Pedersen, James C. Schnable, Andrew H. Paterson, Michael Freeling

Department of Agronomy and Horticulture: Faculty Publications

Background:

It is difficult to accurately interpret chromosomal correspondences such as true orthology and paralogy due to significant divergence of genomes from a common ancestor. Analyses are particularly problematic among lineages that have repeatedly experienced whole genome duplication (WGD) events. To compare multiple “subgenomes” derived from genome duplications, we need to relax the traditional requirements of “one-to-one” syntenic matchings of genomic regions in order to reflect “one-to-many” or more generally “many-to-many” matchings. However this relaxation may result in the identification of synteny blocks that are derived from ancient shared WGDs that are not of interest. For many downstream analyses, we …

Review Of Pieces Of The Plains: Memories And Predictions From The Heart Of America. By John Janovy, Jr., Mark Hammer

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

John Janovy, Jr., author, parasitologist, and Varner Professor of Biological Sciences at the University ofNebraska- Lincoln, describes his book as "sort of a memoir, but one in which experience is the main character, instead of the writer." Janovy divides this experience into three sections describing his past, his present, and humanity's future.

Janovy the teacher is never far from each chapter's storyline. Describing his central theme as "education in the broadest sense, a constant learning derived from exploration of things and places," he sets out in the book's pages to engage in a discussion of big ideas just as he …

Review Of 620 Wild Plants Of North America: Fully Illustrated. By Tom Reaume., Mark J. Leoschke

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

Beautifully and profusely illustrated with the author's black-and-white drawings, the 12-year project that became this book shows his love for plants. Tom Reaume focuses on a representative selection of primarily native vascular plants of the Great Plains of Canada and the northern United States found in forests, lakes, prairies, rivers, and wetlands. The book appears to be designed as a supplement for an introductory course in plant taxonomy.

This book is a useful reference for those interested in the flora of the northern Great Plains and adjacent regions. I highly recommend it for college and university libraries where botany and …

Review Of The Tallgrass Prairie Center Guide To Seed And Seedling Identification In The Upper Midwest. By Dave Williams., H. L. Hillhouse

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

This book will please both practitioners of prairie restoration and more general prairie enthusiasts. It includes 72 grass and forb species, and the focus is clearly on species often found in tallgrass prairie plantings in the upper Midwest. The grasses and forbs are presented separately here, and for each group a morphological key is provided to divide the species into "Key Characteristic Groups." Because these groups are based on morphological similarity, species within a group are often-but not always-closely related.

Short and highly portable, the book covers the most common species in plantings. The only thing that would have delighted …

A First Insight Into Population Structure And Linkage Disequilibrium In The U.S. Peanut Minicore Collection, Vikas Belamkar, Michael Gomez Selvaraj, Jamie L. Ayers, Paxton R. Payton, Naveen Puppala, Mark D. Burow

Department of Agronomy and Horticulture: Faculty Publications

Knowledge of genetic diversity, population structure, and degree of linkage disequilibrium (LD) in target association mapping populations is of great importance and is a prerequisite for LD-based mapping. In the present study, 96 genotypes comprising 92 accessions of the US peanut minicore collection, a component line of the tetraploid variety Florunner, diploid progenitors A. duranensis (AA) and A. ipaënsis (BB), and synthetic amphidiploid accession TxAG-6 were investigated with 392 simple sequence repeat (SSR) marker bands amplified using 32 highly-polymorphic SSR primer pairs. Both distance- and model-based (Bayesian) cluster analysis revealed the presence of structured diversity. In general, the wild-species accessions …

Genes Identified By Visible Mutant Phenotypes Show Increased Bias Toward One Of Two Subgenomes Of Maize, James C. Schnable, Michael Freeling

Department of Agronomy and Horticulture: Faculty Publications

Not all genes are created equal. Despite being supported by sequence conservation and expression data, knockout homozygotes of many genes show no visible effects, at least under laboratory conditions. We have identified a set of maize (Zea mays L.) genes which have been the subject of a disproportionate share of publications recorded at MaizeGDB. We manually anchored these ‘‘classical’’ maize genes to gene models in the B73 reference genome, and identified syntenic orthologs in other grass genomes. In addition to proofing the most recent version 2 maize gene models, we show that a subset of these genes, those that …

Dose–Sensitivity, Conserved Non-Coding Sequences, And Duplicate Gene Retention Through Multiple Tetraploidies In The Grasses, James C. Schnable, Brent S. Pedersen, Sabarinath Subramaniam, Michael Freeling

Department of Agronomy and Horticulture: Faculty Publications

Whole genome duplications, or tetraploidies, are an important source of increased gene content. Following whole genome duplication, duplicate copies of many genes are lost from the genome. This loss of genes is biased both in the classes of genes deleted and the subgenome from which they are lost. Many or all classes are genes preferentially retained as duplicate copies are engaged in dose sensitive protein–protein interactions, such that deletion of any one duplicate upsets the status quo of subunit concentrations, and presumably lowers fitness as a result. Transcription factors are also preferentially retained following every whole genome duplications studied. This …

Switchgrass, Kenneth P. Vogel, Gautam Sarath, Aaron J. Saathoff, Robert B. Mitchell

Department of Agronomy and Horticulture: Faculty Publications

17.1 Introduction

Switchgrass (Panicum virgatum L.) is a warm-season perennial grass that is native to North America that is being developed into a biomass energy crop. It has been used in pastures and for conservation purposes in the Great Plains and the Midwest, USA, for over 70 years.1 The research supporting its use as a pasture and conservation species was largely conducted by US Department of Agriculture (USDA) research programs, most notably the Agricultural Research Service (ARS) project located at the University of Nebraska-Lincoln and USDA Plant Materials Centers that are located throughout the United States. In this report, …

Identification Of A Second Asian Soybean Rust Resistance Gene In Hyuuga Soybean, Mandy D. Kendrick, Donna K. Harris, Bo-Keun Ha, D. L. Hyten, P. B. Cregan, Reid D. Frederick, H. Roger Boerma, Kerry F. Pedley

Department of Agronomy and Horticulture: Faculty Publications

Asian soybean rust (ASR) is an economically significant disease caused by the fungus Phakopsora pachyrhizi. The soybean genes Rpp3 and Rpp?(Hyuuga) confer resistance to specific isolates of the pathogen. Both genes map to chromosome 6 (Gm06) (linkage group [LG] C2). We recently identified 12 additional soybean accessions that harbor ASR resistance mapping to Gm06, within 5 centimorgans of Rpp3 and Rpp?(Hyuuga). To further characterize genotypes with resistance on Gm06, we used a set of eight P. pachyrhizi isolates collected from geographically diverse areas to inoculate plants and evaluate them for differential phenotypic responses. …

Mutational Analysis Of The Major Soybean Uref Paralogue Involved In Urease Activation, Joe C. Polacco, D. L. Hyten, Mônica Medeiros-Silva, David A. Sleper, Kristin D. Bilyeu

Department of Agronomy and Horticulture: Faculty Publications

The soybean genome duplicated ~14 and 45 million years ago and has many paralogous genes, including those in urease activation (emplacement of Ni and CO₂ in the active site). Activation requires the UreD and UreF proteins, each encoded by two paralogues. UreG, a third essential activation protein, is encoded by the single-copy Eu3, and eu3 mutants lack activity of both urease isozymes. eu2 has the same urease-negative phenotype, consistent with Eu2 being a single-copy gene, possibly encoding a Ni carrier. Unexpectedly, two eu2 alleles co-segregated with missense mutations in the chromosome 2 UreF paralogue (Ch02UreF), suggesting …

Cytokinin-Mediated Source ⁄Sink Modifications Improve Drought Tolerance And Increase Grain Yield In Rice Under Water-Stress, Zvi Peleg, Maria Reguera, Ellen Tumimbang, Harkamal Walia, Eduardo Blumwald

Department of Agronomy and Horticulture: Faculty Publications

Drought is the major environmental factor limiting crop productivity worldwide. We hypothesized that it is possible to enhance drought tolerance by delaying stress-induced senescence through the stress-induced synthesis of cytokinins in crop-plants. We generated transgenic rice (Oryza sativa) plants expressing an isopentenyltransferase (IPT) gene driven by PSARK, a stress- and maturation-induced promoter. Plants were tested for drought tolerance at two yield-sensitive developmental stages: pre- and post-anthesis. Under both treatments, the transgenic rice plants exhibited delayed response to stress with significantly higher grain yield (GY) when compared to wild-type plants. Gene expression analysis revealed a significant shift in expression of hormone-associated …

Estimation Of Surface Soil Organic Matter Using A Ground-Based Active Sensor And Aerial Imagery, D. F. Roberts, V. I. Adamchuk, J. F. Shanahan, R. B. Ferguson, J. S. Schepers

Department of Agronomy and Horticulture: Faculty Publications

Active canopy sensors are currently being studied as a tool to assess crop N status and direct in-season N applications. The objective of this study was to use a variety of strategies to evaluate the capability of an active sensor and a wide-band aerial image to estimate surface soil organic matter (OM). Grid soil samples, active sensor reflectance and bare soil aerial images were obtained from six fields in central Nebraska before the 2007 and 2008 growing seasons. Six different strategies to predict OM were developed and tested by dividing samples randomly into calibration and validation datasets. Strategies included uniform, …

Soil Fertility And Crop Yields In Long-Term Organic And Conventional Cropping Systems In Eastern Nebraska, Samuel E. Wortman, Tomie D. Galusha, Stephen C. Mason, Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

Organic agriculture aims to build soil quality and provide long-term benefits to people and the environment; however, organic practices may reduce crop yields. This long-term study near Mead, NE was conducted to determine differences in soil fertility and crop yields among conventional and organic cropping systems between 1996 and 2007. The conventional system (CR) consisted of corn (Zea mays L.) or sorghum (Sorghum bicolor (L.) Moench)–soybean (Glycine max (L.) Merr.)–sorghum or corn–soybean, whereas the diversified conventional system (DIR) consisted of corn or sorghum– sorghum or corn–soybean–winter wheat (wheat, Triticum aestivum L.). The animal manure-based organic system (OAM) …

Stacking Resistance Alleles From Wild And Domestic Soybean Sources Improves Soybean Cyst Nematode Resistance, Myungsik Kim, D. L. Hyten, Terry L. Niblack, Brian W. Diers

Department of Agronomy and Horticulture: Faculty Publications

The soybean cyst nematode (SCN; Heterodera glycines Ichinohe) is the most economically important soybean [Glycine max (L.) Merr.] pathogen in the United States. Field SCN populations are adapting to the narrowly based SCN resistance currently deployed in soybean cultivars. The objective of our research was to measure the effects of combinations of SCN resistance genes or quantitative trait loci (QTL) from the wild soybean (Glycine soja Siebold & Zucc.) PI 468916 and the domesticated soybean accessions PI 88788 and PI 437654. Two populations were developed to test the combinations of QTL and genes. Both populations segregated for the …

Moving Micronutrients From The Soil To The Seeds: Genes And Physiological Processes From A Biofortification Perspective, Brian M. Waters, Renuka P. Sankaran

Department of Agronomy and Horticulture: Faculty Publications

The micronutrients iron (Fe), zinc (Zn), and copper (Cu) are essential for plants and the humans and animals that consume plants. Increasing the micronutrient density of staple crops, or biofortification, will greatly improve human nutrition on a global scale. This review discusses the processes and genes needed to translocate micronutrients through the plant to the developing seeds, and potential strategies for developing biofortified crops.

Switchgrass Contains Two Cinnamyl Alcohol Dehydrogenases Involved In Lignin Formation, Aaron J. Saathoff, Christian M. Tobias, Scott E. Sattler, Eric J. Haas, Paul Twigg, Gautam Sarath

Department of Agronomy and Horticulture: Faculty Publications

Lignin content of switchgrass (Panicum virgatum L.), a bioenergy species, is a critical determinant of biomass quality since it can negatively impact conversion of biomass into liquid fuels via biochemical platforms. Cinnamyl alcohol dehydrogenase (CAD) is a key enzyme in lignin biosynthesis. Here, we have shown that cv. Kanlow switchgrass contains at least two closely related CAD genes (PviCAD1 and PviCAD2) that code for proteins containing highly conserved domains and residues that identify them as bona fide CADs. Both recombinant proteins displayed substrate kinetics consistent with their presumed role in cell wall lignification. Proteomic and immunoblotting detected …

The Composition And Origins Of Genomic Variation Among Individuals Of The Soybean Reference Cultivar Williams 82, William J. Haun, D. L. Hyten, Wayne W. Xu, Daniel J. Gerhardt, Thomas J. Albert, Todd Richmond, Jeffrey A. Jeddeloh, Gaofeng Jia, Nathan M. Springer, Carroll P. Vance, Robert M. Stupar

Department of Agronomy and Horticulture: Faculty Publications

Soybean (Glycine max) is a self-pollinating species that has relatively low nucleotide polymorphism rates compared with other crop species. Despite the low rate of nucleotide polymorphisms, a wide range of heritable phenotypic variation exists. There is even evidence for heritable phenotypic variation among individuals within some cultivars. Williams 82, the soybean cultivar used to produce the reference genome sequence, was derived from backcrossing a Phytophthora root rot resistance locus from the donor parent Kingwa into the recurrent parent Williams. To explore the genetic basis of intracultivar variation, we investigated the nucleotide, structural, and gene content variation of different …

Genome-Wide Association Analysis Identifies Candidate Genes Associated With Iron Deficiency Chlorosis In Soybean, Sujan Mamidi, Shireen Chikara, R. Jay Goos, D. L. Hyten, Deepti Annam, Samira Mafi Moghaddam, Rian K. Lee, P. B. Cregan, Phillip E. Mcclean

Department of Agronomy and Horticulture: Faculty Publications

Iron deficiency chlorosis (IDC) is a significant yield-limiting problem in several major soybean [Glycine max (L.) Merr.] production regions in the United States. Soybean plants display a variety of symptoms that range from a slight yellowing of the leaf to interveinal chlorosis, to stunted growth that reduces yield. The objective of this analysis was to employ single nucleotide polymorphism (SNP)-based genome-wide association mapping to uncover genomic regions associated with IDC tolerance. Two populations [2005 (n = 143) and 2006 (n = 141)] were evaluated in replicated, multilocation IDC trials. After controlling for population structure and individual relatedness, and selecting …

The Role Of Transition Metal Homeostasis In Plant Seed Development, Elsbeth L. Walker, Brian M. Waters

Department of Agronomy and Horticulture: Faculty Publications

Copyright © 2011 Elsevier Ltd. Used by permission.

Moving Magnesium In Plant Cells, Brian M. Waters

Department of Agronomy and Horticulture: Faculty Publications

Magnesium (Mg) is among the most abundant mineral elements in plants, yet the knowledge of which genes control its accumulation in specific tissues and organelles lags behind that of many other mineral elements. Only in recent years has identification of important molecular players begun to take shape. In this issue of New Phytologist, Conn et al. (pp. 583–594) shed additional light on two Mg transporters that play important roles in accumulation of Mg in leaf cell vacuoles. Using subcellular-level ion measurements on leaves, gene expression measurements after single-cell sampling, a genetic approach, and clever use of calcium (Ca) and …