Biology Commons^™

The Effects Of Repeat Concussive Injury On Hippocampal Neurogenesis In Rats, Duane Yu

College of Science and Health Theses and Dissertations

Abstract

A concussion is one of the most common types of traumatic brain injury. Repeat concussion has been associated with an increased likelihood of developing neurodegenerative diseases, such as Parkinson's and Alzheimer's Disease, and chronic traumatic encephalopathy. Although treatments are available to tolerate the symptoms, one potential treatment to address the pathology is to use adult neurogenesis to promote and recruit cells to injury sites for repair. Neurogenesis is the study of new neurons from neural stem cells (NSCs) present in adult humans at the hippocampal dentate gyrus. This study explored whether repeat concussion induces the proliferative capabilities of NSCs …

The Science Of Guessing: Critiquing Ancestral Estimation Through Computer Generated Statistical Analysis Within Forensic Anthropology In A Real-World Setting, Christopher J. Turner

USF Tampa Graduate Theses and Dissertations

Research on current methods of ancestral estimation must reflect on biological heritage to aid in human identification. Using modern craniometrics methods, how do individuals with a varied biological history affect ancestral estimation? Today, the most used and reliable methods for craniometrics analysis for ancestral estimation in forensic anthropology are computer programs. Two programs are analyzed in this study, Fordisc 3.0 and 3D-ID. The analysis of these computer programs goes beyond the controlled environment provided by an osteological collection. These remains of individuals were unidentified, only to be identified later, through academic research, police work, and public outreach. The selection of …

Fossil Vertebrates From A Unique Marine Bonebed Of The Upper Cretaceous Niobrara Chalk, Western Kansas, U.S.A.: New Insights Into The Niobrara Vertebrate Paleoecology, Jonathan Allen

College of Science and Health Theses and Dissertations

The Smoky Hill Chalk Member of the Niobrara Chalk is a sedimentary deposit formed in the Western Interior Seaway of North America during the Late Cretaceous. In this study, I examined a unique fossiliferous bonebed from an uncertain horizon within the Smoky Hill Chalk in Gove County, Kansas, U.S.A. Over 40,450 taxonomically identifiable specimens were collected, where they consisted of at least four chondrichthyans, 24 osteichthyans, and two tetrapods, including taxa such as Nanocorax, Squalicorax, Rhinobatos, pycnodontids, Lepisosteidae, Protosphyraena, Pachyrhizodus, ichthyodectiforms, plethodids, Albulidae, Apateodus, Ichthyotringidae(?), cf. Stratodus, Cimolichthys, Enchodus, Acanthomorpha, Platecarpus, and Hesperornithiformes. The diversity of these vertebrates suggests the …

Poor Vector Competence Of The Human Flea, Pulex Irritans, To Transmit Yersinia Pestis, Adélaïde Miarinjara, David M. Bland, James R. Belthoff, B. Joseph Hinnebusch

Biology Faculty Publications and Presentations

Background: The human flea, Pulex irritans, is widespread globally and has a long association with humans, one of its principal hosts. Its role in plague transmission is still under discussion, although its high prevalence in plague-endemic regions and the presence of infected fleas of this species during plague outbreaks has led to proposals that it has been a significant vector in human-to-human transmission in some historical and present-day epidemiologic situations. However, based on a limited number of studies, P. irritans is considered to be a poor vector and receives very little attention from public health policymakers. In this study …

Scientific Access Into Mercer Subglacial Lake: Scientific Objectives, Drilling Operations And Initial Observations, John C. Priscu, Jonas Kalin, John Winans, Timothy Campbell, Matthew R. Siegfried, Mark Skidmore, Trista J. Vick‐Majors, Et. Al.

Michigan Tech Publications, Part 1

The Subglacial Antarctic Lakes Scientific Access (SALSA) Project accessed Mercer Subglacial Lake using environmentally clean hot-water drilling to examine interactions among ice, water, sediment, rock, microbes and carbon reservoirs within the lake water column and underlying sediments. A ∼0.4 m diameter borehole was melted through 1087 m of ice and maintained over ∼10 days, allowing observation of ice properties and collection of water and sediment with various tools. Over this period, SALSA collected: 60 L of lake water and 10 L of deep borehole water; microbes >0.2 μm in diameter from in situ filtration of ∼100 L of lake water; …

Evaluating The Effects Of Physical Activity On The Cognitive Functions And Motor Skills Of The Special Needs Population And Testing A Different Teaching Style To Maximize The Efficiency Of Special Needs Programs, Oren Nedjar

BIO4960: Practicum in Biology I

This study aimed to analyze the effects of physical activities on the motor and cognitive functions of participants with special needs and compare these results with a similar program but organized online because of the health precautions that have been applied due to the COVID-19 pandemic. An intervention consisting of sending an educational brochure aiming to increase high school volunteers' health literacy was then tested and results showed that it improved participants' health outcomes and also could increase the program's effectiveness in the long term.

Agricultural Conservation Practices And Aquatic Ecological Responses, Richard E. Lizotte, Peter C. Smiley, Robert B. Gillespie, Scott S. Knight

Faculty and Student Publications

Conservation agriculture practices (CAs) have been internationally promoted and used for decades to enhance soil health and mitigate soil loss. An additional benefit of CAs has been mitigation of agricultural runoff impacts on aquatic ecosystems. Countries across the globe have agricultural agencies that provide programs for farmers to implement a variety of CAs. Increasingly there is a need to demonstrate that CAs can provide ecological improvements in aquatic ecosystems. Growing global concerns of lost habitat, biodiversity, and ecosystem services, increased eutrophication and associated harmful algal blooms are expected to intensify with increasing global populations and changing climate. We conducted a …

Qualitative Analysis Of A Modified Leslie-Gower Predator-Prey Model With Weak Allee Effect Ii, Manoj K. Singh, B. S. Bhadauria

Applications and Applied Mathematics: An International Journal (AAM)

The article aims to study a modified Leslie-Gower predator-prey model with Allee effect II, affecting the functional response with the assumption that the extent to which the environment provides protection to both predator and prey is the same. The model has been studied analytically as well as numerically, including stability and bifurcation analysis. Compared with the predator-prey model without Allee effect, it is found that the weak Allee effect II can bring rich and complicated dynamics, such as the model undergoes to a series of bifurcations (Homoclinic, Hopf, Saddle-node and Bogdanov-Takens). The existence of Hopf bifurcation has been shown for …

Temperature Regulation Of Plant Hormone Signaling During Stress And Development, Christian Castroverde, Damaris Dina

Biology Faculty Publications

Global climate change has broad-ranging impacts on the natural environment and human civilization. Increasing average temperatures along with more frequent heat waves collectively have negative effects on cultivated crops in agricultural sectors and wild species in natural ecosystems. These aberrantly hot temperatures, together with cold stress, represent major abiotic stresses to plants. Molecular and physiological responses to high and low temperatures are intricately linked to the regulation of important plant hormones. In this review, we shall highlight our current understanding of how changing temperatures regulate plant hormone pathways during immunity, stress responses and development. This article will present an overview …

Covid-19 Modeling With Caution In Relaxing Control Measures And Possibilities Of Several Peaks In Cameroon, S. Y. Tchoumi, Y. T. Kouakep, D. J. Fotsa Mbogne, J. C. Kamgang, V. C. Kamla, D. Bekolle

Applications and Applied Mathematics: An International Journal (AAM)

We construct a new model for the comprehension of the Covid-19 dynamics in Cameroon. We present the basic reproduction number and perform some numerical analysis on the possible outcomes of the epidemic. The major results are the possibilities to have several peaks before the end of the first outbreak for an uniform strategy, and the danger to have a severe peak after the adoption of a careless strategy of barrier anti-Covid-19 measures that follow a good containment period.

Rapid Warming Events In A Small Coastal Upwelling Embayment, Tatjana E. Ellis

Physics

Temperature variability in the nearshore coastal ocean influences various biological processes and can drive changes in biodiversity and habitat range. Despite recent progress, there are still significant gaps in the understanding of drivers of temperature variability in upwelling bays, particularly at higher frequencies. In this study, we analyzed a decade of nearshore temperature measurements both inside and outside a small coastal embayment located in central California [San Luis Obispo (SLO) bay], as well as temperature data from satellites, to characterize rapid warming events. We found that rapid warming events, defined using rates of temperature change across different thresholds, occurred more …

Global Stability Of Generalized Within-Host Chikungunya Virus Dynamics Models, Taofeek O. Alade, Afeez Abidemi, Cemil Tunç, Shafeek A. Ghaleb

Applications and Applied Mathematics: An International Journal (AAM)

This paper proposes two models of a general nonlinear within-host Chikungunya virus (CHIKV) dynamics. The production, incidence, proliferation and removal rates of all compartments are modeled by general nonlinear functions that satisfy a set of reasonable conditions. The second model takes into consideration two forms of infected host cells: (i) latently infected cells which do not produce the CHIKV, (ii) actively infected cells which generate the CHIKV particles. We show that all the solutions of the models are nonnegative and bounded. The global stability of the steady states of the models is proven by applying Lyapunov method and LaSalle’s invariance …

Prawn Resource Of Exmouth Gulf Harvest Strategy : 2021-2026 : Version 2.0, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

Switching Effects Driven By Predation On Diffusive Predator Prey System, Anal Chatterjee, Samares Pal

Applications and Applied Mathematics: An International Journal (AAM)

No abstract provided.

Decellularized Porcine Cartilage Scaffold: Validation Of Decellularization And Evaluation Of Biomarkers Of Chondrogenesis, Roxanne N. Stone, Stephanie M. Frahs, Makenna J. Hardy, Akina Fujimoto, Xinzhu Pu, Cynthia Keller-Peck, Julia Thom Oxford

Biology Faculty Publications and Presentations

Osteoarthritis is a major concern in the United States and worldwide. Current non-surgical and surgical approaches alleviate pain but show little evidence of cartilage restoration. Cell-based treatments may hold promise for the regeneration of hyaline cartilage-like tissue at the site of injury or wear. Cell–cell and cell–matrix interactions have been shown to drive cell differentiation pathways. Biomaterials for clinically relevant applications can be generated from decellularized porcine auricular cartilage. This material may represent a suitable scaffold on which to seed and grow chondrocytes to create new cartilage. In this study, we used decellularization techniques to create an extracellular matrix scaffold …

Unifying Community Detection Across Scales From Genomes To Landscapes, Stephanie F. Hudon, Andrii Zaiats, Anna Roser, Anand Roopsind, Cristina Barber, Brecken Robb, Britt Pendleton, Merry M. Davidson, Jonas Frankel-Bricker, Marcella Fremgen-Tarantino, Jennifer Sorensen Forbey, Eric Hayden, Olivia K. Rodriguez, T. Trevor Caughlin

Biology Faculty Publications and Presentations

Biodiversity science encompasses multiple disciplines and biological scales from molecules to landscapes. Nevertheless, biodiversity data are often analyzed separately with discipline-specific methodologies, constraining resulting inferences to a single scale. To overcome this, we present a topic modeling framework to analyze community composition in cross-disciplinary datasets, including those generated from metagenomics, metabolomics, field ecology and remote sensing. Using topic models, we demonstrate how community detection in different datasets can inform the conservation of interacting plants and herbivores. We show how topic models can identify members of molecular, organismal and landscape-level communities that relate to wildlife health, from gut microbes to forage …

Longitudinal Study Of Pogonomyrmex Occidentalis (Hymenoptera: Formicideae), Western Harvester Ant, Colony Survival In Western Nebraska, Kathleen H. Keeler

School of Biological Sciences: Faculty Publications

I observed individual western harvester ant (Pogonomyrmex occidentalis) colonies, marked between 1977 and 1994, to live a mean of 15.65 years (n = 112). The longest-lived colony lived 42 years.

Development Of A Split Green Fluorescent Protein Reporting System For Angiogenin, Phan QuỳNh ChâU Lê

Lawrence University Honors Projects

Angiogenin (ANG) is a secreted protein that holds important implications in the growth and survival for a variety of cell types—from healthy endothelial or neuronal cells, to diseased cancer cells. Currently, we lack a complete understanding of ANG’s mechanism of action. Our work aims to develop a functional fluorescence-based reporting system to study ANG internalization activity in cancer cells. Specifically, we utilize a split green fluorescent protein (split GFP) system, in which the 11th strand of the GFP molecule (GFP11) is attached to ANG, while the remaining non-fluorescent GFP1-10 fragment is expressed in our target HeLaGFP1-10 cell line. The reconstitution …

The Biomechanics Of The Softball Swing In Seven Stages: Optimizing Exit Velocity, Ceara A. Larson

Lawrence University Honors Projects

The study of sports biomechanics is a rapidly developing field that can be used to analyze an athlete’s most critical motions and improve their performance. In the world of baseball, sports biomechanists, scientists dedicated to the field of sports biomechanics, help keep pitchers healthy, optimize pitch performance, and improve a batter’s swing efficiency. Because of their surface-level similarities, the findings of baseball biomechanical studies have been projected onto the sport of women’s fastpitch softball, despite their substantial differences in physiology, field dimensions, pitch delivery, and classifications of hitters. The purpose of this study is to produce a biomechanical analysis unique …

A Novel Thin-Film Technique To Improve Accuracy Of Fluorescence-Based Estimates For Periphytic Biofilms, Leon Katona, Yvonne Vadeboncoeur, Christopher T. Nietch, Katie Hossler

Biological Sciences Faculty Publications

Recent studies suggest that photophysiological parameters for intact substrates with depth (e.g., periphytic biofilms, microphytobenthos) are overestimated by pulse-amplitude modulated (PAM) fluorometry. This overestimation results from depth-integration effects, following the activation of deeper photosynthesizing layers by an attenuated light signal. To mitigate this error, we propose a novel slide-based thin-film technique in which fluorescence is measured on a vertically representative subsample of the biofilm, spread evenly on a microscope slide. We compared bias and precision for photosynthetic parameters estimated through conventional PAM fluorometry on intact biofilms and through our novel slide-based technique, both theoretically and empirically. Numerical simulations confirmed the …

College Of Natural Sciences Newsletter, June 2021, College Of Natural Sciences

College of Natural Sciences Newsletters and Reports

Volume 2, Issue 6.

Page 1 Dean's Message
Page 2-6 Remembering the Life of Dr. Pengra and Celebrating His legacy for Entire Generations to Come.

Linking Behavioral States To Landscape Features For Improved Conservation Management, Maitreyi Sur, Jim R. Belthoff

Biology Faculty Publications and Presentations

1. A central theme for conservation is understanding how animals differentially use, and are affected by change in, the landscapes they inhabit. However, it has been challenging to develop conservation schemes for habitat-specific behaviors.
2. Here we use behavioral change point analysis to identify behavioral states of golden eagles (Aquila chrysaetos) in the Sonoran and Mojave Deserts of the southwestern United States, and we identify, for each behavioral state, conservation-relevant habitat associations.
3. We modeled behavior using 186,859 GPS points from 48 eagles and identified 2,851 distinct segments comprising four behavioral states. Altitude above ground level (AGL) best differentiated behavioral states, …

Understanding The Climate Impacts On Decadal Vegetation Change In Northern Alaska, Jacob A. Harris, Robert D. Hollister, Timothy F. Botting, Craig E. Tweedie, Katlyn Rose Betway, Jeremy May, Robert T.S. Barrett, Jenny A. Liebig, Hana L. Christoffersen, Sergio A. Vargas, Mariana Orejel, Tabatha L. Fuson

Open Access Publishing Support Funded Articles

The Arctic is experiencing rapid climate change. This research documents tundra vegetation changes near Atqasuk and Utqiaġvik, Alaska. At each location, 30 plots were sampled annually from 2010 to 2019 using a point frame. For every encounter, we recorded the height and classified it into eight groupings (deciduous shrubs, evergreen shrubs, forbs, graminoids, bryophytes, lichens, litter and standing dead vegetation); for vascular plants we also identified the species. We found an increase in plant stature and cover over time consistent with regional warming. Graminoid cover and height increased at both sites, with a fivefold increase in cover in Atqasuk. At …

Lianas Have More Acquisitive Traits Than Trees In A Dry But Not In A Wet Forest, Jose A. Medina-Vega, Frans Bongers, Lourens Poorter, Stefan A. Schnitzer, Frank J. Sterck

Biological Sciences Faculty Research and Publications

1. Lianas are increasing in relative abundance and biomass in many tropical forests. We tested the hypothesis that lianas conform to the fast and acquisitive end of the continuum of plant strategies, allowing lianas to acquire resources faster than trees.
2. We assessed functional traits representative of the leaf (LES) and wood economics spectrum (WES), including plant hydraulics, in 16 liana and 16 tree species in the canopy of two tropical forests at the extremes of the climatic and geological gradient across the Isthmus of Panama.
3. For both forests, we observed a trade-off between the construction of more productive leaves with rapid …

Promoting Inclusive Metrics Of Success And Impact To Dismantle A Discriminatory Reward System In Science, Sarah W. Davies, Hollie M. Putnam, Tracy Ainsworth, Julia K. Baum, Colleen B. Bove, Sarah C. Crosby, Isabelle M. Cote, Anne Duplouy, Robinson W. Fulweiler, Alyssa J. Griffin, Torrance C. Hanley, Tessa Hill, Adriana Humanes, Sangeeta Mangubhai, Anna Metaxas, Laura M. Parker, Hanny E. Rivera, Nyssa J. Silbiger, Nicola S. Smith, Ana K. Spalding, Nikki Traylor-Knowles, Brooke L. Weigel, Rachel M. Wright, Amanda E. Bates

Biological Sciences: Faculty Publications

Success and impact metrics in science are based on a system that perpetuates sexist and racist "rewards"by prioritizing citations and impact factors. These metrics are flawed and biased against already marginalized groups and fail to accurately capture the breadth of individuals' meaningful scientific impacts. We advocate shifting this outdated value system to advance science through principles of justice, equity, diversity, and inclusion. We outline pathways for a paradigm shift in scientific values based on multidimensional mentorship and promoting mentee well-being. These actions will require collective efforts supported by academic leaders and administrators to drive essential systemic change.

A Dynamic Landscape Of Fear: Human Impacts On Carnivore Communities, Tru Hubbard

All NMU Master's Theses

Mammalian carnivores are elusive, enigmatic species that often play keystone roles in ecosystems through direct (i.e., predation) and indirect (i.e., perceived predation risk) effects. Worldwide many carnivore species are experiencing rapid human-mediated population declines due to landscape change and habitat disturbance. For researchers, carnivores present unique challenges due to their large home ranges, low population densities, sensitivity to human disturbance, and direct persecution. Further, growing evidence shows that human activity can impact carnivore behavior and community structure by altering predator-prey interactions, shifting diel activity patterns, and altering wildlife movement leading to increased sightings, nuisance reports, and harvests. To investigate how …

Programming Simulations Of Diel Vertical Migration Behavior Of Zooplankton, Bennett J. Mcafee

Lawrence University Honors Projects

Diel vertical migration of zooplankton is the daily cycle of movement towards and away from the surfaceof a lake that results from the need to avoid predation and forage for food.The process of diel vertical migration is one of the main forces creating the spatial and temporal structure of aquatic food webs, often acting as the biological pump that moves carbon around an aquatic environment(Brierley 2014).In Daphnia, a genus of crustacean zooplankton, this behavior is triggered in response to both lightintensity and chemical signaling by predators. As a result, diel vertical migration changes in intensity in response to fish populations …

The Effect Of Sampling Density And Study Area Size On Landscape Genetics Inferences For The Mississippi Slimy Salamander (Plethodon Mississippi), Stephanie M. Burgess, Ryan C. Garrick

Faculty and Student Publications

In landscape genetics, it is largely unknown how choices regarding sampling density and study area size impact inferences upon which habitat features impede vs. facilitate gene flow. While it is recommended that sampling locations be spaced no further apart than the average individual's dispersal distance, for low-mobility species, this could lead to a challenging number of sampling locations, or an unrepresentative study area. We assessed the effects of sampling density and study area size on landscape genetic inferences for a dispersal-limited amphibian, Plethodon mississippi, via analysis of nested datasets. Microsatellite-based genetic distances among individuals were divided into three datasets representing …

Downhill Running Impairs Peripheral But Not Central Neuromuscular Indices In Elbow Flexor Muscles, Xin Ye, Robert J. Benton, William M. Miller, Sunggun Jeon, Jun Seob Song

Faculty and Student Publications

The purpose of this study was to examine the effects of a 1-h downhill running exercise on the elbow flexor muscles’ neuromuscular functions. Seventeen adults (Control [CON]: n = 9; Experimental [EXP]: n = 8) completed this study. The CON rested for 30 min while the EXP performed the downhill running. Before, 10 min, 24 h, and 48 h after the interventions, dependent variables (knee extensor muscle soreness, elbow flexion and knee extension isometric strength, elbow flexion resting twitch and voluntary activation [VA], and the biceps surface electromyography [EMG] amplitude) were measured. Knee extensor muscle soreness was significantly greater in …

Ruvb-Like Protein 2 Interacts With The Ns1 Protein Of Influenza A Virus And Affects Apoptosis That Is Counterbalanced By Type I Interferons, Yimeng Wang, Jianhong Zhou, Samuel G. Mackintosh, Yuchun Du

Biological Sciences Faculty Publications and Presentations

The NS1 protein of influenza A virus (IAV) plays important roles in viral pathogenesis and host immune response. Through a proteomic approach, we have identified RuvB-like proteins 1 and 2 (RuvBL1 and RuvBL2) as interacting partners of the NS1 protein of IAVs. Infection of human lung A549 cells with A/PR/8/34 (PR8) virus resulted in reductions in the protein levels of RuvBL2 but not RuvBL1. Further studies with RuvBL2 demonstrated that the NS1-RuvBL2 interaction is RNA-independent, and RuvBL2 binds the RNA-binding domain of the NS1. Infection of interferon (IFN)-deficient Vero cells with wild-type or delNS1 PR8 virus reduced RuvBL2 protein levels …