Biology Commons^™

A Review Of Marine Turtle Orientation And Artificial Lighting Impacts With Novel Results From Florida’S Gulf Coast, Andrea M. Fisher

USF Tampa Graduate Theses and Dissertations

Artificial light (i.e. unnatural light emitting from a human-made source) is one of the most extensively distributed, and least managed, type of anthropogenic pollution. Due to the disproportionally high rates of urbanization in critical coastal ecosystems, species, like marine turtles that use beach habitat for nesting activities, are especially vulnerable. Marine turtles employ the use of multiple visual cues (e.g. wavelength, intensity, background illumination, and dark silhouettes) to conduct sea-finding behavior and different variations in cue usage exist across species and geographic location. During nesting and emergence activities, orientation can be interrupted and manipulated by artificial lighting resulting in lower …

Cetacean Maternal Investment: Importance In Conservation Across Species And Drivers For Interspecific Altruism, Christopher Klein

USF Tampa Graduate Theses and Dissertations

Cetacean maternal investments can be useful for conservation management as well as examining behaviors such as interspecific altruism in the humpback whale, Megaptera novaeangliae. Cetaceans are among the most threatened group of marine mammals. In the second chapter, maternal investments across ~90 species/subspecies of Cetacea were analyzed to aid in the understanding of recovery/replacement for conservation and management. Using Principal Components Analysis (PCA), a relative maternal-investment index for 41 cetacean species was built. The maternal-investment index was a composite of four maternal-investment variables, the duration of gestation, lactation, calving intervals, and the number of reproduction years per female per species. …

Home Range Area, Overlap, Homing Behavior And Movement Patterns In Plestiodon Reynoldisi, Paul Wieczorek Ii

USF Tampa Graduate Theses and Dissertations

Home range and home range overlap information are crucial to create management plans for species of conservation concern. It provides information as to how much land a viable population needs to survive. The South Florida Multi-Species Recovery Plan highlights the need for home range and movement information for Plestiodon reynoldsi (Florida Sand Skink), a threatened lizard species precinctive to Florida Scrub habitat. We investigated home range sizes, their relationship with SVL and mass, home range overlap, homing behavior, and movement patterns of the Florida Sand Skink (FSS) and over a three-year period in the Lake Wales Ridge National Wildlife Refuge. …

Hybrid Sterility, Genetic Conflict And Complex Speciation: Lessons From The Drosophila Simulans Clade Species, Daven C. Presgraves, Colin D. Meiklejohn

School of Biological Sciences: Faculty Publications

The three fruit fly species of the Drosophila simulans clade— D. simulans, D. mauritiana, and D. sechellia— have served as important models in speciation genetics for over 40 years. These species are reproductively isolated by geography, ecology, sexual signals, postmating-prezygotic interactions, and postzygotic genetic incompatibilities. All pairwise crosses between these species conform to Haldane’s rule, producing fertile F1 hybrid females and sterile F1 hybrid males. The close phylogenetic proximity of the D. simulans clade species to the model organism, D. melanogaster, has empowered genetic analyses of their species differences, including reproductive incompatibilities. But perhaps no phenotype has been subject to …

Literature Review Of Human Hdr Syndrome With Gata3 Haplo Insufficiency, Olivia Ambursley-Gries

Honors Theses

This literature mining project is regarding mutations that cause hearing loss in patients with human hypo parathyroid, deafness, and renal dysplasia (HDR) syndrome caused by a mutation in the GATA3 gene. The disease is unique; not all diagnosed individuals present with all symptoms of the triad. Van Esh et al. found that the haploinsufficiency of the GATA3 is found on chromosome 10p14-p15 (ref.1). The focus of this work is to condense the literature on GATA3 haploinsufficiency correlating to human HDR syndrome. Due to the lack of global healthcare access, it can be assumed that many cases remain undiagnosed; 180 have …

The Brain Transcriptome Of The Wolf Spider, Schizocosa Ocreata, Daniel Stribling, Peter L. Chang, Justin E. Dalton, Christopher A. Conow, Malcolm Rosenthal, Eileen Hebets, Rita M. Graze, Michelle N. Arbeitman

School of Biological Sciences: Faculty Publications

Objectives: Arachnids have fascinating and unique biology, particularly for questions on sex differences and behavior, creating the potential for development of powerful emerging models in this group. Recent advances in genomic techniques have paved the way for a significant increase in the breadth of genomic studies in non-model organisms. One growing area of research is comparative transcriptomics. When phylogenetic relationships to model organisms are known, comparative genomic studies provide context for analysis of homologous genes and pathways. The goal of this study was to lay the groundwork for comparative transcriptomics of sex differences in the brain of wolf spiders, a …

Toxoplasma Gondii Infections Are Associated With Costly Boldness Toward Felids In A Wild Host, Eben Gering, Zachary M. Laubach, Patty Sue D. Weber, Gisela Soboll Hussey, Kenna D. S. Lehmann, Tracy M. Montgomery, Julie W. Turner, Wei Perng, Malit O. Pioon, Kay E. Holekamp, Thomas Getty

Biology Faculty Articles

Toxoplasma gondii is hypothesized to manipulate the behavior of warm-blooded hosts to promote trophic transmission into the parasite’s definitive feline hosts. A key prediction of this hypothesis is that T. gondii infections of non-feline hosts are associated with costly behavior toward T. gondii’s definitive hosts; however, this effect has not been documented in any of the parasite’s diverse wild hosts during naturally occurring interactions with felines. Here, three decades of field observations reveal that T. gondii-infected hyena cubs approach lions more closely than uninfected peers and have higher rates of lion mortality. We discuss these results in light …

Active Targeting Of Her2-Positive Breast Cancer Cells With Rapamycin-Functionalized Gold Nanorods, Bryan Edgar White

Theses and Dissertations

Breast cancer is a significant cause of cancer-associated deaths, with over 13% of women in the U.S. estimated to develop invasive breast cancer in their lifetime. The human epidermal growth factor receptor (HER2/neu) is a growth-promoting protein that is overexpressed in 15-20% of breast cancers (HER2-positive breast cancer). HER2- positive breast cancer generally grows and spreads more quickly than other breast cancers but can be targeted therapeutically. Drug targeting methods have been developed to stop the growth and spread of cancer. These methods include using specific antibodies to target overexpressed cancer cell surface antigens and delivering drugs via nanoparticles. However, …

Spiders You May Encounter While Social Distancing: A Field Guide To Oregon, Daniel K. Hufnagel

Anthós

This document is simply a short field guide on the many endearing spiders you have encountered or will potentially encounter while social distancing in Oregon. Included are journal entries for six different species of spider, with each log containing an illustration and a description of the physical appearance, behavior, and habitat of the arachnid listed. Also included is a basic diagram depicting the anatomy of the common spider.

Fire Severity Effects On Herpetofaunal Diversity In Florida Scrub Communities Of The Lake Wales Ridge, Michelle Lindsay

USF Tampa Graduate Theses and Dissertations

Fires, either natural or prescribed, are essential for conserving pyrogenic ecosystems; however, climate change is predicted to increase fire severity that could negatively impact species diversity. Reptile and amphibian species may be particularly at risk given they are ectothermic species. The objective of this study was to better understand the impacts of fire severity on the herpetofaunal communities of the Florida scrub habitats, which is an imperiled ecosystem that sustains over two-thirds of listed reptiles and amphibians in Florida. We conducted a field-based study to test taxonomic and functional herpetofaunal diversity differences across four varying fire severities: unburned, low, medium …

Intense Mowing Management Suppresses Invader, But Shifts Competitive Resistance By A Native To Facilitation, David U. Nagy, Emily Rauschert, Ragan M. Callaway, Tamas Henn, Rita Filep, Robert W. Pal

Biological, Geological, and Environmental Faculty Publications

Interactions among native and invasive species may affect management outcomes and goals. We implemented different mowing regimes to control the invasive Solidago gigantea and restore natural diversity, and also examined interactions between Solidago and a European native competitor, Tanacetum vulgare in the context of these regimes. Experimentally planted Tanacetum suppressed Solidago by 79% without management, and a suite of mowing management regimes reduced the density of Solidago by 80–98% when Tanacetum was absent. But, when Tanacetum was added, the density of the invader was not reduced by mowing. Put another way, in mowed plots with Tanacetum, Solidago was twofold to …

Dental Calculus As A Proxy For Animal Microbiomes, Andrew T. Ozga, Claudio Ottoni

Biology Faculty Articles

The field of dental calculus research has exploded in recent years, predominantly due to the multitude of studies related to human genomes and oral pathogens. Despite having a subset of these studies devoted to non-human primates, little progress has been made in the distribution of oral pathogens across domestic and wild animal populations. This overlooked avenue of research is particularly important at present when many animal populations with the potentiality for zoonotic transmission continue to reside in close proximity to human groups due to reasons such as deforestation and climatic impacts on resource availability. Here, we analyze all previously available …

Public Discussion Of Anthrax On Twitter: Using Machine Learning To Identify Relevant Topics And Events, Michele Miller, William Lee Romine, Terry L. Oroszi

Biological Sciences Faculty Publications

Background: Social media allows researchers to study opinions and reactions to events in real time. One area needing more study is anthrax-related events. A computational framework that utilizes machine learning techniques was created to collect tweets discussing anthrax, further categorize them as relevant by the month of data collection, and detect discussions on anthrax-related events. Objective: The objective of this study was to detect discussions on anthrax-related events and to determine the relevance of thetweets and topics of discussion over 12 months of data collection. Methods: This is an infoveillance study, using tweets in English containing the keyword “Anthrax” and …

Nutrient Limitation Of Algae And Macrophytes In Streams: Integrating Laboratory Bioassays, Field Experiments, And Field Data, Christopher A. Mebane, Andrew M. Ray, Amy Marcarelli

Michigan Tech Publications, Part 1

Successful eutrophication control strategies need to address the limiting nutrient. We conducted a battery of laboratory and in situ nutrient-limitation tests with waters collected from 9 streams in an agricultural region of the upper Snake River basin, Idaho, USA. Laboratory tests used the green alga Raphidocelis subcapitata, the macrophyte Lemna minor (duckweed) with native epiphytes, and in situ nutrient-limitation tests of periphyton were conducted with nutrient-diffusing substrates (NDS). In the duckweed/epiphyte test, P saturation occurred when concentrations reached about 100 μg/L. Chlorophyll a in epiphytic periphyton was stimulated at low P additions and by about 100 μg/L P, epiphytic periphyton …

The Sensitivity Of Neotoma To Climate Change And Biodiversity Loss Over The Late Quaternary, Catalina P. Tomé, S. Kathleen Lyons, Seth D. Newsome, Felisa A. Smith

School of Biological Sciences: Faculty Publications

The late Quaternary in North America was marked by highly variable climate and considerable biodiversity loss including a megafaunal extinction event at the terminal Pleistocene. Here, we focus on changes in body size and diet in Neotoma (woodrats) in response to these ecological perturbations using the fossil record from the Edwards Plateau (Texas) across the past 20,000 years. Body mass was estimated using measurements of fossil teeth and diet was quantified using stable isotope analysis of carbon and nitrogen from fossil bone collagen. Prior to ca. 7,000 cal yr BP, maximum mass was positively correlated to precipitation and negatively correlated …

Trait-Based Variation In The Foraging Performance Of Individuals, John P. Delong, Stella F. Uiterwaal, Anthony I. Dell

School of Biological Sciences: Faculty Publications

Although average, species-level interaction strength plays a key role in driving population dynamics and community structure, predator-prey interactions occur among individuals. As a result, individual variation in foraging rates may play an important role in determining the effects of predator-prey interactions on communities. Such variation in foraging rates stems from individual variation in traits that influence the mechanistic components of the functional response, such as movements that determine encounters and behaviors such as decisions to attack. However, we still have little information about individual-level variation in functional responses or the traits that give rise to such variation. Here we combine …

Impacts Of Detritivore Diversity Loss On Instream Decomposition Are Greatest In The Tropics, Luz Boyero, Naiara López-Rojo, Alan M. Tonin, Javier Pérez, Francisco Correa-Araneda, Richard G. Pearson, Jaime Bosch, Ricardo J. Albariño, Sankarappan Anbalagan, Leon A. Barmuta, Ana Basaguren, Francis J. Burdon, Adriano Caliman, Marcos Callisto, Ian C. Campbell, Bradley J. Cardinale, J. Jesús Casas, Ana M. Chará-Serna, Eric Chauvet, Szymon Ciapała, Jose Checo Colón-Gaud, Aydeé Cornejo, Aaron M. Davis, Monika Degebrodt, Emerson S. Dias, María E. Díaz, Michael M. Douglas, Andrea C. Encalada, Ricardo Figueroa, Alexander S. Flecker, Tadeusz Fleituch, Erica A. García, Gabriela García, Pavel E. García, Mark O. Gessner, Jesús E. Gómez, Sergio Gómez, Jose F. Gonçalves Jr, Manuel A. S. Graça, Daniel C. Gwinn, Robert O. Hall Jr., Neusa Hamada, Cang Hui, Daichi Imazawa, Tomoya Iwata, Samuel K. Kariuki, Andrea Landeira-Dabarca, Kelsey A. Laymon, María Leal, Richard Marchant, Renato T. Martins, Frank O. Masese, Megan Maul, Brendan G. Mckie, Adriana O. Medeiros, Charles M. M’ Erimba, Jen A. Middleton, Silvia Monroy, Timo Muotka, Junjiro N. Negishi, Alonso Ramírez, John S. Richardson, José Rincón, Juan Rubio-Ríos, Gisele M. Dos Santos, Romain Sarremejane, Fran Sheldon, Augustine Sitati, Nathalie S. D. Tenkiano, Scott D. Tiegs, Janine R. Tolod, Michael Venarsky, Anne Watson, Catherine M. Yule

Biology: Faculty Publications

The relationship between detritivore diversity and decomposition can provide information on how biogeochemical cycles are affected by ongoing rates of extinction, but such evidence has come mostly from local studies and microcosm experiments. We conducted a globally distributed experiment (38 streams across 23 countries in 6 continents) using standardised methods to test the hypothesis that detritivore diversity enhances litter decomposition in streams, to establish the role of other characteristics of detritivore assemblages (abundance, biomass and body size), and to determine how patterns vary across realms, biomes and climates. We observed a positive relationship between diversity and decomposition, strongest in tropical …

Covid-19: A One Health Issue, Karen Gruszynski

Cumberland Mountain Naturalist

COVID-19 has very rapidly become part of modern societal lexicon as the disease highlights the importance understanding zoonotic diseases and the impact they can have on human life. With a 177million human cases and 3.82million deaths globally at the time of this publication, the "One Health" nature of the disease has had a lasting impact across the planet. As the disease spread rapidly, it highlighted the dissemination of information through social media and other sources. With this in mind, Dr. Gary Vroegindewey, Director for One Health at LMU-CVM, put forth the idea to have students collect and summarize information about …

Potential Therapeutic Effects Of Snake Venom Components On Pain Management In Rheumatoid Arthritis Patients, Maggie Metzger

University Honors Theses

This paper reviews the existing literature on the uses of snake venom in the treatment of rheumatoid arthritis and pain management. Venom from the families Elapidae and Viperidae have been shown to have anti-inflammatory and analgesic effects. The analgesic findings of research on arthritis murine models are discussed, and the existing uses of snake venom in medicine to suggest the therapeutic potential of venom in the pain management of rheumatoid arthritis are taken into account. Snake venom has anti-inflammatory effects by reducing levels of pro-inflammatory cytokines and increasing levels of anti-inflammatory cytokines. Additionally, snake venom can reduce structural damage from …

The Usage Of Resveratrol For Eye Pain After Refractive Surgery, Dennis Nguyen

University Honors Theses

LASEK and PRK are common laser corrective eye procedures that aim to correct the refractive errors of the eye, although these procedures do carry the potential of post-operation complications of dry eye and symptoms of pain and photophobia as a result of corneal innervation damage. Resveratrol was tested on the surface of the cornea to see if the drug would be effective at attenuating post-corrective eye pain. Male and female rats underwent a unilateral corneal abrasion surgery that aimed to mimic the post-op symptoms of PRK. The rats either received the resveratrol drug treatment or a vehicle formulation. The Rat …

Bryophyte Ecosystem Services: How Bryophytes Impact Ecosystem Processes And Their Use In Urban Systems, Keila Spangler

University Honors Theses

Bryophytes, which include mosses, liverworts, and hornworts, are non-vascular plants that provide crucial ecosystem services in natural and urban systems. In natural systems, these services include carbon, water, and nutrient cycling and maintenance of community level biodiversity. In urban systems, bryophytes can be used as green roof substrate, as bioindicators to monitor pollution and air quality, for horticulture uses, and in medicine. Although bryophytes possess some qualities, such as reproduction by spores, that may give them an advantage compared to vascular plants as the climate warms, their response to climate change remains understudied. This paper will review the literature on …

Beneficial Use Decision Support For Wetlands: Case Study For Mobile Bay, Alabama, Kyle D. Runion, Brandon M. Boyd, Candice D. Piercy, James T. Morris

Faculty Publications

The beneficial use of dredged material (BUDM) for wetland restoration improves coastal wetland resilience and conserves coastal natural infrastructure. Tools, such as biophysical models help coastal managers to assess habitat vulnerability and plan restoration. In this study, the Marsh Equilibrium Model (MEM) will be utilized combined with observed data to predict future conditions and evaluate potential marsh restoration via the BUDM in Mobile Bay, Alabama. A range of site conditions and restoration strategies will be considered and the impacts on dredged material management area (DMMA) volumes will be evaluated. Wetland restoration via thin-layer placement (TLP) of dredged material (DM) restores …

Deacylated Trna Accumulation Is A Trigger For Bacterial Antibiotic Persistence Independent Of The Stringent Response, Whitney N. Wood, Kyle Mohler, Jesse Rinehart, Michael Ibba

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Bacterial antibiotic persistence occurs when bacteria are treated with an antibiotic and the majority of the population rapidly dies off, but a small subpopulation enters into a dormant, persistent state and evades death. Diverse pathways leading to nucleoside triphosphate (NTP) depletion and restricted translation have been implicated in persistence, suggesting alternative redundant routes may exist to initiate persister formation. To investigate the molecular mechanism of one such pathway, functional variants of an essential component of translation (phenylalanyltRNA synthetase [PheRS]) were used to study the effects of quality control on antibiotic persistence. Upon amino acid limitation, elevated PheRS quality control led …

A Qualitative Study On The Factors Affecting The Willingness Of 3rd Level Students To Register As Organ Donors In Ireland, Evelyn Hayes, Erika Horan, Cian Lally, Aisling Murphy

International Undergraduate Journal of Health Sciences

A wide range of factors contribute to an individual’s choice whether or not to register as an organ donor. The knowledge of the Irish population at large around the area of donation and transplantation is varied. A research survey was designed to be completed by third level students. The purpose of the research was to determine the most important factors that played a role in their decisions regarding opting-in to organ donation. A second aim of the survey was to determine the participants’ levels of knowledge and understanding on the ‘opt in’ donation system in place here in Ireland.

The …

Full Issue: The International Undergraduate Journal Of Health Sciences, Volume 1, Issue 1, June 2021, Iujhs Full Issue

International Undergraduate Journal of Health Sciences

The full June 2021 issue (Volume 1, Issue 1) of the International Undergraduate Journal of Health Sciences

Bio 013: Writing In The Sciences - Evolutionary Themes, Syllabus, Esther Muehlbauer

Open Educational Resources

The Syllabus for Bio. 013, Writing in the Sciences - Evolutionary Themes, is a College Writing 2 course that develops student skill in science writing for different audiences: Scientists writing for themselves (the Field journal); Scientists writing for other scientists (the Review article); and Scientists writing for students/ society ( an Essay for a periodical that utilizes analogy/metaphor). To inform this writing, students read and discuss Darwin's original works and the writings of more contemporary evolutionary theorists, including E. Mayr and S.J. Gould. This course is appropriate for incoming students as well as more advanced biology students.

Fruits, Frugivores, And The Evolution Of Phytochemical Diversity, Susan R. Whitehead, Gerald F. Schneider, Ray Dybzinski, Annika S. Nelson, Mariana Gelambi, Elsa Jos, Noelle G. Beckman

Biology Faculty Publications

Plants produce an enormous diversity of secondary metabolites, but the evolutionary mechanisms that maintain this diversity are still unclear. The interaction diversity hypothesis suggests that complex chemical phenotypes are maintained because different metabolites benefit plants in different pairwise interactions with a diversity of other organisms. In this synthesis, we extend the interaction diversity hypothesis to consider that fruits, as potential hotspots of interactions with both antagonists and mutualists, are likely important incubators of phytochemical diversity. We provide a case study focused on the Neotropical shrub Piper reticulatum that demonstrates: 1) secondary metabolites in fruits have complex and cascading effects for …

Editorial Board

Karbala International Journal of Modern Science

No abstract provided.

Hydraulic Architecture Explains Species Moisture Dependency But Not Mortality Rates Across A Tropical Rainfall Gradient, Alexandria L. Pivovaroff, Brett T. Wolfe, Nate G. Mcdowell, Bradley O. Christoffersen, Stuart J. Davies, L. Turin Dickman, Charlotte Grossiord, Riley T. Leff, Alistair Rogers, Shawn P. Serbin

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Intensified droughts are affecting tropical forests across the globe. However, the underlying mechanisms of tree drought response and mortality are poorly understood. Hydraulic traits and especially hydraulic safety margins (HSMs), that is, the extent to which plants buffer themselves from thresholds of water stress, provide insights into species-specific drought vulnerability. We investigated hydraulic traits during an intense drought triggered by the 2015–2016 El Niño on 27 canopy tree species across three tropical forest sites with differing precipitation. We capitalized on the drought event as a time when plant water status might approach or exceed thresholds of water stress. We investigated …

Lgbtqia+ Care Simulation: Examining Participating Students’ Attitude And Comfort, Grezelro Gonzalez

College of Science and Health Theses and Dissertations

Background: The LGBTQIA+ communities face healthcare disparities that contribute to reduced overall health. One factor affecting LGBTQIA+ communities’ reduced overall health is poor health-promoting behaviors or avoidance of care due to healthcare providers’ lack of knowledge, poor attitude, and low comfort levels with LGBTQIA+ care. There are limited studies to date that address nursing students’ attitude and comfort with LGBTQIA+ affirming care interventions outside of lectures. Therefore, the purpose of this study was to evaluate the effect of a simulation intervention on the attitude and comfort of prelicensure nursing students towards providing care to members of the LGBTQIA+ community. Sample: …