Biology Commons^™

Evaluating Mutagenicity Of Burned Arginine-Based Heterocyclic Amines And Anti-Mutagenicity Effect Of Chinese Medicinal Herbs, Rayford C. Alva

Honors Theses

From the unexpected finding that cooked grains and meat substitutes elicit a mutagenic response in Salmonella typhimurium TA98, our work has been aimed at deconstructing this finding via a survey of heated binary amino acid combinations, involving arginine, a plant-based amino acid. secondly, our work has looked towards sing phytochemical extracts from traditional Chinese medicinal herbs to inhibit the mutagenic activity of heterocyclic amines (main culprit for mutagenicity in meat). Two fractions from the burned products of arginine and phenylalanine (RF-HCA-06 and -07) were statistically significant inducers of mutagenesis; Scutellaria barbata and Oldenlandia diffusa, both separately and together, were statistically …

A Note On The Onset Of Synchronous Egg Laying In A Seabird Behavior Model, Dorothea Gallos, Christiane Gallos

Honors Theses

Protection Island, Washington hosts a large colony of Glaucous-winged gulls (Larus glaucescens). These birds are known to exhibit every-other-day egg-laying synchrony in dense areas of the colony in response to egg cannibalism, which is the main source of egg loss. Here we present an equilibrium analysis of a discrete-time animal behavior model for egg laying. We use Jury Conditions to find the stability criteria for the equilibrium as a function of the colony density and show that a 2-cycle bifurcation occurs when the equilibrium loses stability. The 2-cycle pattern in egg laying becomes increasingly synchronous as the colony density increases. …

Critical Amino Acids For The Folding Of Carboxypeptidase O, Donn Latour

Honors Theses

Enzymes must fold properly to function. For carboxypeptidases, a prodomain usually assists in this process. However, carboxypeptisdase O (CPO) can fold without one. We hypothesized that this prodigious ability could arise from an amino acid whose fortunate positioning stabilizes its neighbors during folding. We identified four unique, conserved amino acids and mutated them to their equivalent counterpart in CPA, a cousin of CPO, which requires a prodomain. We expressed the mutated genes in mammalian cells and checked for expression by western blotting. Our results indicate that three of four mutations were not expressed, hinting at the possible importance of these …

Effects Of Eggshell Coloration On Egg Cannibalism Among Glaucous-Winged Gulls, Isabelle Hwang

Honors Theses

A common source of reproductive loss in gulls is egg cannibalism. At a large Glaucous-winged Gull (Larus glaucescens) colony on Protection Island, Washington, cannibalism accounts for 55% of egg loss. Because cannibalism is a form of predation and birds have a highly developed sense of vision, I hypothesized that visible light coloration of Glaucous-winged Gull eggs plays a role in determining whether they are cannibalized. I used logistic regression to test whether egg fate was related to egg brightness, specific coloration, specific spot coverage, coloration relative to the most common coloration, and spot coverage relative to the most common spot …

Emptying And Refilling Of Slime Glands In Atlantic (Myxine Glutinosa) And Pacific (Eptatretus Stoutii) Hagfishes, Sarah Schorno, Todd E. Gillis, Douglas S. Fudge

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Hagfishes are known for their unique defensive slime, which they use toward off gill-breathing predators. Although much is known about the slime cells (gland thread cells and gland mucous cells), little is known about how long slime gland refilling takes, or how slime composition changes with refilling or repeated stimulation of the same gland. Slime glands can be individually electrostimulated to release slime, and this technique was used to measure slime gland refilling times for Atlantic and Pacific hagfish. The amount of exudate produced, the composition of the exudate and the morphometrics of slime cells were analyzed during refilling, and …

Examining The Relationship Between Climate And Seasonal Stream Thermal Regimes In A High Desert Ecosystem, Hannah Moore, Melody Feden

Scholars Week

Climate change is negatively affecting ecosystems around the world, and in the coming years, scientists predict that these changes will only intensify and accelerate. In the western mountains of North America, climate change projections predict elevated temperatures, reduced snowpack, and earlier snowmelt. Elevated air temperatures have the propensity to affect water temperatures in sensitive freshwater ecosystems. Temperature increases may cause streams to reach the upper thermal limit for many aquatic organisms, such as aquatic invertebrates and fish, and result in death or dispersal for these organisms. This makes the availability of cold-water refugia in streams that much more important for …

Can Omnivores Mediate The Effects Of Degradation?, Hannah Moore

Scholars Week

Omnivores feed at multiple trophic levels and have large effects on community structuring and stability. The magnitude and direction of such effects, whether omnivores stabilize or destabilize communities, remains unresolved. Shifts in omnivore diet and trophic position may be of particular importance to community stability in degraded habitats, where resources are sparse. For example, omnivores may reduce the severity and duration of community responses to degradationby dampening the effects of any disturbance-mediated trophic cascade. The relatively simple food webs of freshwater systems are ideal for studying trophic ecology, and in the western U.S., streams are heavily degraded by overgrazing, beaver …

An Insoluble Iron Complex Coated Cathode Enhances Direct Electron Uptake By Rhodopseudomonas Palustris Tie-1, Karthikeyan Rengasamy, Tahina Ranaivoarisoa, Rajesh Singh, Arpita Bose

Biology Faculty Research

Microbial electrosynthesis (MES) is a promising bioelectrochemical approach to produce biochemicals. A previous study showed that Rhodopseudomonas palustris TIE-1 can directly use poised electrodes as electron donors for photoautotrophic growth at cathodic potentials that avoid electrolytic H₂ production (photoelectroautotrophy). To make TIE-1 an effective biocatalyst for MES, we need to improve its electron uptake ability and growth under photoelectroautotrophic conditions. Because TIE-1 interacts with various forms of iron while using it as a source of electrons for photoautotrophy (photoferroautotrophy), we tested the ability of iron-based redox mediators to enhance direct electron uptake. Our data show that soluble iron cannot …

Investigation Of Alcohol-Induced Changes In Hepatic Histone Modifications Using Mass Spectrometry Based Proteomics, Crystina Leah Kriss

USF Tampa Graduate Theses and Dissertations

Alcohol liver disease (ALD) is a major health concern throughout the world. Currently, in the United States, 17 million people suffer from alcoholism, of which 1.4 million people are receiving treatment [1, 2]. The link between ethanol metabolism, reactive oxygen species (ROS) and liver injury in ALD has been well characterized over the last couple decades [3-10]. Ethanol metabolism relies on the availability of the cofactor NAD+ for the oxidation of ethanol into acetate, consequently causing alterations in redox potential. Redox dysfunction within the mitochondria can affect multiple pathways important in maintaining cellular homeostasis. Chapter 1 provides an introduction to …

Characterization Of The Interaction Between R. Conorii And Human Host Vitronectin In Rickettsial Pathogenesis, Abigail Inez Fish

LSU Doctoral Dissertations

Spotted Fever Group Rickettsia are inoculated into the mammalian host during hematophagous arthropod feeding. Once in the bloodstream and during dissemination, the survival of these pathogens is dependent upon their ability to evade innate host defenses until a proper cellular target is reached. The establishment of a successful infection also relies on the ability of the bacteria to attach and invade target cells, as failure to do so results in destruction of the bacterium. Rickettsia conorii expresses an outer membrane protein, Adr1, which binds the multifunctional human glycoprotein, vitronectin, to promote resistance to complement mediated killing. Homologs of Adr1 are …

Creating A Predictive Model For Flowering Of Virginia Orchid, Cypripedium Pubescens, Emily Horton

Student Scholar Showcase

No abstract provided.

Evaluating Effects Of Gene Mutation And Light Intensity On Arabidopsis Thaliana Development, Carolanne Bekus

Student Scholar Showcase

The completion of sequencing Arabidopsis thaliana’s genome has led to the next crucial challenge of determining gene function in these plants. A. thaliana is a model organism often compared to commercial crops. The discovery of gene function within these plants will aid in giving insight on how gene function can affect commercial crop production. Presented here is an analysis comparing wild-type Columbia (Col-O), to single gene mutants when knocking-out transcriptional factors VPI/ABI3-like 1 (val1) and basic region/leucine zipper motif (bZIP). These single gene mutations may affect several traits that in turn can result in morphological changes and/or …

Analysis Of Downstream Signaling Of Tlrs After U0126 Inhibition, Brandy Frazier

Student Scholar Showcase

Francisella tularensis (F. tularensis) is a pathogenic bacterium which causes the disease tularemia. F. tularensis is thought to be able to enter and multiply inside of liver cells because it interacts with toll-like receptors (TLRs). Examining the signaling pathway downstream of the TLRs will allow for better understanding of how this disease works and possible treatment strategies. In this study I propose to examine how molecular inhibitors affect signaling downstream of TLRs in HepG2 cells treated with lipopolysaccharides (LPS) from E. coli. Mitogen-activated protein kinase is a cellular molecule in signaling cascades that directs cellular response mechanisms. MAPK can be …

Routes Of Pesticide Exposure In Solitary, Cavity-Nesting Bees, Andi M. Kopit, Theresa L. Pitts-Singer

Biology Faculty Publications

Declines of pollinator health and their populations continue to be commercial and ecological concerns. Agricultural practices, such as the use of agrochemicals, are among factors attributed to honey bee (Apis mellifera L. (Hymenoptera: Apidae)) population losses and are also known to have negative effects on populations of managed non-Apis pollinators. Although pesticide registration routinely requires evaluation of impacts on honey bees, studies of this social species may not reveal important pesticide exposure routes where managed, solitary bees are commonly used. Studies of solitary bees offer additional bee models that are practical from the aspect of availability, known rearing …

A Pex1 Missense Mutation Improves Peroxisome Function In A Subset Of Arabidopsis Pex6 Mutants Without Restoring Pex5 Recycling, Bethany Zolman, Kim Gonzalez, Sarah Ratzel, Kendall Burks, Charles Danan, Jeanne Wages, Bonnie Bartel

Biology Department Faculty Works

Peroxisomes are eukaryotic organelles critical for plant and human development because they house essential metabolic functions, such as fatty acid β-oxidation. The interacting ATPases PEX1 and PEX6 contribute to peroxisome function by recycling PEX5, a cytosolic receptor needed to import proteins targeted to the peroxisomal matrix. Arabidopsis pex6 mutants exhibit low PEX5 levels and defects in peroxisomal matrix protein import, oil body utilization, peroxisomal metabolism, and seedling growth. These defects are hypothesized to stem from impaired PEX5 retrotranslocation leading to PEX5 polyubiquitination and consequent degradation of PEX5 via the proteasome or of the entire organelle via autophagy. We recovered a …

Differential Susceptibilities Of Anopheles Albimanus And Anopheles Stephensi Mosquitoes To Ivermectin, Staci M. Dreyer, Kelsey J. Morin, Jefferson A. Vaughan

Biology Faculty Publications

Background

Vector control is a crucial element of anti-malaria campaigns and works best when there is a thorough knowledge of the biology and behaviour of the Anopheles vector species responsible for transmitting malaria within a given locale. With the push to eradicate malaria stronger than ever, there is a growing need to develop and deploy control strategies that exploit the behavioural attributes of local vector species. This is especially true in regions where the vectors are exophagic (i.e., prefer to bite outdoors), exophilic (i.e., prefer to remain outdoors), and zoophagic (i.e., as likely to feed on non-humans as humans). One …

The Natural Variance Of The Arabidopsis Floral Secondary Metabolome, Takayuki Tohge, Monica Borghi, Alisdair R. Fernie

Biology Faculty Publications

Application of mass spectrometry-based metabolomics enables the detection of genotype-related natural variance in metabolism. Differences in secondary metabolite composition of flowers of 64 Arabidopsis thaliana (Arabidopsis) natural accessions, representing a considerable portion of the natural variation in this species are presented. The raw metabolomic data of the accessions and reference extracts derived from flavonoid knockout mutants have been deposited in the MetaboLights database. Additionally, summary tables of floral secondary metabolite data are presented in this article to enable efficient re-use of the dataset either in metabolomics cross-study comparisons or correlation-based integrative analysis of other metabolomic and phenotypic features such as …

Innovations In High School Physiology: The Arduino Heart Rate L.E.D Monitor, Sowmya Anjur

Faculty Publications & Research

Physiology and Disease (PAD) is a Biology elective at the Illinois Mathematics and Science Academy, Aurora, Illinois, which is a residential magnate school for students gifted in math and science. My PAD class is based upon student centered learning which has proven to be the best way to challenge students to take responsibility for their own learning. Students spend the most time on the cardiovascular unit, wherein they measure their heart rates, lung capacity and blood pressure before, during and after exercise, correlating their data to their understanding of neuronal controls. Students also build a working model of the mechanical …

Investigating The Apoptotic Effects Of Platinum(Ii) Amine Complexes With Only One Leaving Ligand On Zebrafish Auditory End Organs, Joshua Smith

Masters Theses & Specialist Projects

The FDA-approved platinum compound, cisplatin, is commonly used as a chemotherapy drug to treat many forms of cancer. However, this compound also has several associated side-effects, including ototoxicity. This has made the development of novel platinum compounds that reduce cancer cell viability, while causing fewer and milder side-effects, an area of significant research interest. In the present study, we examined the apoptotic effects that four monofunctional platinum compounds, pyriplatin, phenanthriplatin, Pt(diethylenetriamine)Cl, and Pt(N,Ndiethyldiethylenetriamine) Cl, had on zebrafish inner ear auditory epithelial cells. We then compared the apoptotic effects of these compounds to those of cisplatin, which is a bifunctional platinum …

Tao-1 And Its Function At The Drosophila Melanogaster Neuromuscular Junction, Kathryn Puhalla

Senior Honors Projects

Tao-1 is a gene that controls the growth of mitotic tissues in Drosophila melanogaster through the Hippo signaling pathway. We have found that Tao-1 also functions independently of this pathway, in regulating the growth of synapses and formation of boutons at Drosophila neuromuscular junctions. We hypothesized that Tao-1 could be exerting its effects at the neuromuscular junction by working through a signaling pathway involving Par-1 and the microtubule associated protein, tau, to affect the microtubule cytoskeleton, which is essential for proper synaptic growth. We overexpressed or knocked down (by RNAi) the expression of each of these genes presynaptically in order …

Validation Of A Water Quality Index For Lake Erie, Vaclava Hazukova

Masters Theses

This study validates a water quality index based on a diatom total phosphorus transfer function for monitoring of the Lake Erie’s pelagic zone. Lake Erie is again under the threat of cultural eutrophication, mostly due to the runoff of nutrients from the surrounding farmlands. Therefore, it is an issue of high importance to continue monitoring efforts in Lake Erie to assess further deterioration or progressive changes due to the restoration management practices. Diatom-biomonitoring represents one of the efficient and well-crafted tools to assess the actual conditions. However, indices of water quality based on diatom transfer functions are often used without …

The Role Of Gene Therapy In Neurodegenerative Disease Treatment, Elaina Bohanon

Senior Honors Projects

No abstract provided.

Comment On Amézquita Et Al. (2017) “Conspicuousness, Color Resemblance, And Toxicity In Geographically Diverging Mimicry: The Pan‐Amazonian Frog Allobates Femoralis ”, Ralph Saporito, Taran Grant

2018 Faculty Bibliography

Amézquita et al. (2017) recently concluded that species of the Allobates femoralis group are toxic to mice at levels equivalent to syntopic alkaloid‐containing poison frogs, which they attributed to the presence of alkaloids in skin secretions. However, the chemical composition of skin secretions was not analyzed, and here we present additional data supporting the absence of alkaloids in skin secretions of the Allobates femoralis group. Instead, we suggest the observed toxicity was caused by the anesthetic benzocaine, which was applied to the buccal cavity to euthanize frogs prior to skin removal. We show that orally administered benzocaine is rapidly incorporated …

Octopus Resource Of Western Australia Harvest Strategy : 2018 – 2022 : Version 1.0, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

Characterizing The Role Of Cp1 In Drosophila Melanogaster: Its Effects On Basement Membrane Degradation And Signaling, Dane Alan Flinchum

Masters Theses & Specialist Projects

CP1 is a well-conserved cathepsin L-like protease essential for proper growth and development in Drosophila melanogaster. Previous research has demonstrated that CP1 has the ability to break down the extracellular matrix. Using the UAS-GAL4 system, immunohistochemistry, and antibody-staining, this research attempts to characterize the role of CP1 and its effects on basement membrane degradation and signaling. These effects include actions at the cellular level and on a known signaling pathway. The genes involved in this pathway are known to be required for proper development of the wing disc into the adult wing. We have demonstrated the collagenase activity of CP1 …

The Mechanism Of Biotremor Production In The Veiled Chameleon (Chamaeleo Calyptratus), Samuel Tegge

Masters Theses & Specialist Projects

Vibratory communication has evolved in numerous animal groups, including insects, spiders, fishes, mammals, and was recently discovered in veiled chameleons (Chamaeleo calyptratus). I examined the mechanism by which C. calyptratus produce these biotremors. Muscle activity data were gathered during simulated anti-predator responses via electromyography (EMG) with simultaneous recordings of biotremor production using an accelerometer. I correlated EMG data with the accelerometer data to implicate the muscles responsible for the production of the biotremors. Mixed-effect linear regression models described the mechanism, and a model selection framework determined which model fit the data best. I then used an analysis of variance to …

Do Paraben Derivatives Alter T Cell Immunity?, Hailey Kintz

Spring Presentation of Undergraduate Research

T cells immunity is linked to a complex system of cytokines that determine differentiation of naïve T cells into Th1, Th2, Th17, and Treg cells. Estrogen production or periods of elevated production have been correlated with an anti-inflammatory state in which Th2 and Treg cells are up-regulated. Such responses in the immune system are capable of supporting pre-cancerous activity. We are investigating the tie between the xenoestrogen compounds found in cosmetics, parabens, and their ability to regulate T cell immunity. Testing parabens and paraben derivatives with weaker estrogen receptor association will allow for a better understanding of the interplay between …

The Nose Knows: How Tri-Trophic Interactions And Natural History Shape Bird Foraging Behavior, Kaitlin Bonner, Gregory B. Cunningham

Biology Faculty/Staff Publications

THE ECOLOGICAL QUESTION

Do two species of ocean-foraging birds detect and respond to a chemical cue which is linked to their food source, and how might differences in their natural history help to explain any variation in sensitivity?

ECOLOGICAL CONTENT

Foraging, trophic cascades, chemical ecology, behavioral ecology, Antarctic food webs

WHAT STUDENTS DO

This dataset is designed for first-year biology students, but can be altered for upper-level students. After receiving sufficient background on the biology of King penguins, students must make hypotheses regarding the penguins’ sensitivity to an odor known to be associated with the primary productivity of the ocean. …

Genetic Interactions Between Bob1 And Multiple 26s Proteasome Subunits Suggest A Role For Proteostasis In Regulating Arabidopsis Development, Elan W. Silverblatt-Buser , '12, Melissa A. Frick , '12, Christina Rabeler, Nicholas J. Kaplinsky

Biology Faculty Works

Protein folding and degradation are both required for protein quality control, an essential cellular activity that underlies normal growth and development. We investigated how BOB1, an Arabidopsis thaliana small heat shock protein, maintains normal plant development. bob1 mutants exhibit organ polarity defects and have expanded domains of KNOX gene expression. Some of these phenotypes are ecotype specific suggesting that other genes function to modify them. Using a genetic approach we identified an interaction between BOB1 and FIL, a gene required for abaxial organ identity. We also performed an EMS enhancer screen using the bob1-3 allele to identify pathways that are …

A Home For Hope: Examining The History, Role And Purpose Of The Modern American Zoo, Lilly Burba 18

Honor Scholar Theses

No abstract provided.