Biology Commons^™

The Effects Of Low Dissolved Oxygen Concentrations On Diving Behavior And Lactate Accumulation In Lithobates Pipiens, Benjamin R. Thompson, Tristen M. Zimmerman

Celebrating Scholarship and Creativity Day (2018-)

Dissolved oxygen (DO) concentrations in bodies of water can differ based on geographic location, time of day, or even climate change. Because frogs acquire approximately 20% of their oxygen across the skin, decreases in DO could negatively affect diving behavior by increasing reliance on anaerobic metabolism and formation of lactate. To evaluate this possibility, we measured pulmonary and cutaneous oxygen exchange as well as blood lactate levels before and after a 30-minute dive period under both saturated DO (8.341 ± 0.042 mg/L) and low DO conditions (3.918 ± 0.597 mg/L). Although frogs diving in a low oxygen environment tended to …

Behavioral Response Of Amano Shrimp With A Predatory Stimulus, Paul Flanagan, Mitchell Muske

Celebrating Scholarship and Creativity Day (2018-)

Amano Shrimp Evasion in Response to Predatory Stimulus This study observed the physical behavior of the crustacean Caridina multidentata, more commonly known as amano shrimp, and their response when introduced to a predation-like stimulus. This research sought to understand how amano shrimp are affected by the presence of fish and possible predation. This research carries significance as it could indicate whether the shrimp are affected by the water they’re in, and if that affects their capabilities to carry out their main commercial purpose. This study specifically looks at the amano shrimp and its ability to evade predation when exposed to …

Investigating The Synergistic Effects Of Two Curcuminoids And Cisplatin On Cancer Cell Reactive Oxygen Species, Matthew Millay

Mahurin Honors College Capstone Experience/Thesis Projects

Cisplatin is an anticancer drug which can cause the production of reactive oxygen species (ROS) that kill cancer cells. Curcumin is a naturally occurring plant compound that can increase ROS levels in cancer cells and enhance the activity of cisplatin against cancer, but it exhibits poor bioavailability. We investigated whether two synthetic curcumin analogs (curcuminoids), EF-24 and CLEFMA, with anti-cancer activity and improved bioavailability, increased cisplatin’s effect against cancer. A spectrophotometric fluorescent ROS assay was used to determine if cisplatin, the curcuminoids or combinations of cisplatin with a curcuminoid affected the level of ROS in the A549 non-small cell lung …

Admixture, Evolution, And Variation In Reproductive Isolation In The Boechera Puberula Clade, Martin P. Schilling, Zachariah Gompert, Fay-Wei Li, Michael D. Windham, Paul G. Wolf

Biology Faculty Publications

Background

Hybridization is very common in plants, and the incorporation of new alleles into existing lineages (i.e. admixture) can blur species boundaries. However, admixture also has the potential to increase standing genetic variation. With new sequencing methods, we can now study admixture and reproductive isolation at a much finer scale than in the past. The genus Boechera is an extraordinary example of admixture, with over 400 hybrid derivates of varying ploidy levels. Yet, few studies have assessed admixture in this genus on a genomic scale.

Results

In this study, we used Genotyping-by-Sequencing (GBS) to clarify the evolution of the Boechera …

Predator-By-Environment Interactions Mediate Bacterial Competition In The Dictyostelium Discoideum Microbiome, Fredrik Inglis, Odion Asikhia, Erica Ryu, David Queller, Joan Strassmann

Biology Department Faculty Works

Interactions between species and their environment play a key role in the evolution of diverse communities, and numerous studies have emphasized that interactions among microbes and among trophic levels play an important role in maintaining microbial diversity and ecosystem functioning. In this study, we investigate how two of these types of interactions, public goods cooperation through the production of iron scavenging siderophores and predation by the social amoeba Dictyostelium discoideum, mediate competition between two strains of Pseudomonas fluorescens that were co-isolated from D. discoideum. We find that although we are able to generally predict the competitive outcomes between strains based …

Method For The Detection Of 17-B-Estradiol In Wastewater Facility Effluents Using Hplc, Alexa Mariah Fisher, Benjamin J. Thornton

Research in Biology

Studies of the effects of estrogen in aquatic ecosystems largely focus on fish. In fish, estrogen reduces fecundity in females, reduces testicular development and fertility in males, and alters vitellogenin production in both sexes. One way estrogens enter aquatic environments is via wastewater effluents. Effluent samples from the Moccasin Bend Wastewater Treatment Facility in Chattanooga, Tennessee were tested for the presence of 17-beta-estradiol (E2), using an Agilent 1260 Infinity LC (HPLC). We were not able to detect the presence of E2 in these samples with the methods described. However, when effluent samples were spiked with stock E2 (final concentration of …

Predator-By-Environment Interactions Mediate Bacterial Competition In The Dictyostelium Discoideum Microbiome, R Fredrik Inglis, Odion Asikhia, Erica Ryu, David C. Queller, Joan E. Strassmann

Biology Faculty Research

Interactions between species and their environment play a key role in the evolution of diverse communities, and numerous studies have emphasized that interactions among microbes and among trophic levels play an important role in maintaining microbial diversity and ecosystem functioning. In this study, we investigate how two of these types of interactions, public goods cooperation through the production of iron scavenging siderophores and predation by the social amoeba Dictyostelium discoideum, mediate competition between two strains of Pseudomonas fluorescens that were co-isolated from D. discoideum. We find that although we are able to generally predict the competitive outcomes between …

Ecofeminism In The Speculative Fiction Of Ursula K. Le Guin, Octavia Butler, And Margaret Atwood, Cara Williams

Honors Scholar Theses

The aim of this article is to explore the speculative fiction works of three prominent, female speculative fiction writers: Ursula K. Le Guin, Margaret Atwood,and Octavia Butler through an ecofeminist lens. Ecofeminism, as first coined by Francois D'Eaubonne in 1974, is a philosophy that compares the oppression and abuse of women to that of the environment. This article notes how Le Guin, Atwood, and Butler portray women and the environment in post-apocalyptic science fiction. Specifically, this article looks at how these authors explore food acquisition and consumption in their various worlds. This article asks the question, how does our relationship …

Modern Advances In 3d Bioprinting Techniques: The Organ Easy-Bake Oven, Michael Oladosu

D.U.Quark

Bioprinting is an additive tissue manufacturing process in which cells are stacked in a layer by layer process. Progress in bioprinting techniques have advanced the potential in various medical disciplines such as printed tissue, organs, and bone structures for implantation. Due to the wide array of variations in terms of application there can be a lot of confusion as to what the best method would be to print a structure. This review will describe key factors to the printing process such as bioink selection, printer configurations as well as post-print stabilization methods. Greater understanding of available technologies can dramatically improve …

Investigating The Molecular Function Of Akirin During Skeletal Myogenesis In Drosophila Melanogaster, Kristina Rowland

Master of Science in Integrative Biology Theses

The specification and differentiation of muscle precursor cells, or myoblasts, by the action of the mesodermal and muscle transcription regulator Twist is a key event in the formation of the Drosophila larval musculature. Akirin, a highly conserved nuclear protein, appears to play a critical role in the regulation of Twist-dependent gene expression during mesodermal specification and muscle development. Specifically, Akirin serves as a cofactor to promote interactions between regulatory transcription factors and multisubunit Brahma SWI/SNF-class chromatin remodeling complex to impact gene expression across varying targets. Using a genetic interaction screen in Drosophila, we have begun to identify other Akirin …

Evaluating Effects Of Gene Mutations And Light Intensity On Arabidopsis Thaliana Development, Carolanne Bekus

Undergraduate Theses and Capstone Projects

Arabidopsis thaliana is a model organism often compared to commercial crops. The completion of sequencing A. thaliana’s genome has led to the next crucial challenge of determining gene function in these plants. The discovery of gene function within these plants will provide insights on how gene function can affect commercial crop production. This work compared wild-type Columbia (Col-O) A. thaliana to single gene mutants VPI/ABI3-like 1 (VAL1) and basic region/leucine zipper motif (bZIP). These single gene mutations may affect several traits that, in turn, can result in morphological changes and/or time of development in seedlings. Wild-type and …

Controlling Oct4 Expression Levels Using Invitrogen’S Geneswitch™ System, Autumn S. Leggins

Showcase of Undergraduate Research and Creative Endeavors (SOURCE)

Oct4 is a transcription factor that is crucial for the induction and retention of pluripotency in pluripotent stem cells. The potential for Oct4 to regulate the developmental potency of multipotent stem cells like adipose-derived mesenchymal stem cells (ADSCs) is not well understood. One approach to explore Oct4’s role would be through the use of cellular assays to control the expression of Oct4. This can possibly be accomplished by introducing a biological switch and the gene of interest into ADSCs. In this project, the GeneSwitch™ System was used to ultimately induce Oct4 expression. Oct4 was extracted from a pEX-K4-Oct4 plasmid (from …

Investigating Caffeine Levels In Water Sources In Morehead, Kentucky, Sarah Little, Brandon G. Van Ness

Celebration of Student Scholarship Poster Sessions Archive

No abstract provided.

A Potential New Way To Reduce Bed Bug Infestations: Arthroshield 880, Kristian Sills, Anne Park, Sean O'Keefe

Celebration of Student Scholarship Poster Sessions Archive

No abstract provided.

Body Size Downgrading Of Mammals Over The Late Quaternary, Felisa A. Smith, Rosemary E. Elliott Smith, S. Kathleen Lyons, Jonathan L. Payne

School of Biological Sciences: Faculty Publications

Since the late Pleistocene, large-bodied mammals have been extirpated from much of Earth. Although all habitable continents once harbored giant mammals, the few remaining species are largely confined to Africa. This decline is coincident with the global expansion of hominins over the late Quaternary. Here, we quantify mammalian extinction selectivity, continental body size distributions, and taxonomic diversity over five time periods spanning the past 125,000 years and stretching approximately 200 years into the future. We demonstrate that size-selective extinction was already under way in the oldest interval and occurred on all continents, within all trophic modes, and across all time …

Enantioselective Cross Aldol Reactions Of Aldehydes, Chase C. Slone, Brandon G. Van Ness

Celebration of Student Scholarship Poster Sessions Archive

No abstract provided.

Culturing Of Female Bladder Bacteria Reveals An Interconnected Urogenital Microbiota, Krystal Thomas-White, Samuel C. Forster, Nitin Kumar, Michelle Van Kuiken, Catherine Putonti, Mark D. Stares, Evann E. Hilt, Travis K. Price, Alan J. Wolfe, Trevor D. Lawley

Bioinformatics Faculty Publications

Metagenomic analyses have indicated that the female bladder harbors an indigenous microbiota. However, there are few cultured reference strains with sequenced genomes available for functional and experimental analyses. Here we isolate and genome-sequence 149 bacterial strains from catheterized urine of 77 women. This culture collection spans 78 species, representing approximately two thirds of the bacterial diversity within the sampled bladders, including Proteobacteria, Actinobacteria, and Firmicutes. Detailed genomic and functional comparison of the bladder microbiota to the gastrointestinal and vaginal microbiotas demonstrates similar vaginal and bladder microbiota, with functional capacities that are distinct from those observed in the gastrointestinal microbiota. Whole-genome …

Threshold-Dependent Repression Of Spl Gene Expression By Mir156/Mir157 Controls Vegetative Phase Change In Arabidopsis Thaliana, Jia He, Mingli Xu, Matthew R. Willmann, Kevin Mccormick, Tieqiang Hu, Li Yang, Colby G. Starker, Daniel F. Voytas, Blake C. Meyers, R. Scott Poethig

Faculty Publications

Vegetative phase change is regulated by a decrease in the abundance of the miRNAs, miR156 and miR157, and the resulting increase in the expression of their targets, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) transcription factors. To determine how miR156/miR157 specify the quantitative and qualitative changes in leaf morphology that occur during vegetative phase change, we measured their abundance in successive leaves and characterized the phenotype of mutations in different MIR156 and MIR157 genes. miR156/miR157 decline rapidly between leaf 1&2 and leaf 3 and decrease more slowly after this point. The amount of miR156/miR157 in leaves 1&2 greatly exceeds the …

Culturing Of Female Bladder Bacteria Reveals An Interconnected Urogenital Microbiota, Krystal Thomas-White, Samuel C. Forster, Nitin Kumar, Michelle Van Kuiken, Catherine Putonti, Mark D. Stares, Evann E. Hilt, Travis K. Price, Alan J. Wolfe, Trevor D. Lawley

Biology: Faculty Publications and Other Works

Metagenomic analyses have indicated that the female bladder harbors an indigenous microbiota. However, there are few cultured reference strains with sequenced genomes available for functional and experimental analyses. Here we isolate and genome-sequence 149 bacterial strains from catheterized urine of 77 women. This culture collection spans 78 species, representing approximately two thirds of the bacterial diversity within the sampled bladders, including Proteobacteria, Actinobacteria, and Firmicutes. Detailed genomic and functional comparison of the bladder microbiota to the gastrointestinal and vaginal microbiotas demonstrates similar vaginal and bladder microbiota, with functional capacities that are distinct from those observed in the gastrointestinal microbiota. Whole-genome …

2018 2nd Place: Identifying The Effectiveness Of Plant Extracts For Treating Biofilms Of Escherichia Coli And Myxococcus Xanthus, Micah Burton, Akeisha Belgrave, Rachel Fogle

Harrisburg University Research Symposium (2018 & 2019)

Antibiotic resistance is a topic that is of growing concern in the field of medicine. Antibiotics act as growth blockers or act as toxins, killing the organism they affect. These biological weapons generate selective pressure leading to the current antibiotic crisis. This selective pressure causes resistant organisms to begin to emerge and over generations antibiotic resistance can develop and be spread among a bacterial population.

One of the key factors contributing to antibiotic resistance in bacteria is the ability for some bacteria to form and shield themselves within biofilms. Biofilms are masses of bacteria protected by a polysaccharide/ extracellular DNA …

2018 3rd Place: The Growth And Characterization Of Psychromonas Aquimarina, A New Model Organism For Climate Change, Carrie Carpenter, Catherine Santai

Harrisburg University Research Symposium (2018 & 2019)

Climate change is currently affecting the Earth and will only increase with time1. A change to the environment means that wildlife will need to adapt. Adaptation occurs when an organism changes physiologically or otherwise to permit continued growth in the environment in which it resides. Scientists do not completely understand adaptation mechanisms. Psychromonas aquimarinais a novel bacterium, with little known. This bacteria will first be characterized and studied before conducting temperature studies. Psychromonas aquimarina is a psychrophile, a bacterium able to survive in colder regions where most bacteria would not. P. aquimarinais an ideal bacterium to study because climate change …

Effect Of A Pre-Dinner Walnut Snack On Nutrient Intake Among University Students, Michelle E. Lacasse, Mackenzie J. Weis, Lauren S. Devaan, Gabrielle L. Schnellman, Elizabeth M. Gile, Molly D. Ahmann, Ted Wilson, Tisha L. Hooks

Undergraduate Research Celebration 2018

No abstract provided.

Phase Diagram Of Water Confined By Graphene, Zhenghan Gao, Nicolas Giovambattista, Ozgur Sahin

Publications and Research

The behavior of water confined at the nanoscale plays a fundamental role in biological processes and technological applications, including protein folding, translocation of water across membranes, and filtration and desalination. Remarkably, nanoscale confinement drastically alters the properties of water. Using molecular dynamics simulations, we determine the phase diagram of water confined by graphene sheets in slab geometry, at T = 300 K and for a wide range of pressures. We find that, depending on the confining dimension D and density σ, water can exist in liquid and vapor phases, or crystallize into monolayer and bilayer square ices, as observed in …

The Influence Of Plant Modularity On The Defense Against Specialist Insect Herbivory, Jill Syrotchen

Honors Theses

Little work has been done to determine the relationship between modularity and chemical defense induction against herbivory in herbaceous plant species. We investigated this topic using Asclepias syriaca, common milkweed, and one of its specialist aphid herbivores, Aphis nerii. We studied milkweeds of varying modularities growing in the prairies of Pierce Cedar Creek Institute in Hastings, MI and introduced A. nerii to the plants, monitoring growth of plants and aphid populations over time. After A. syriaca leaves and A. nerii were harvested from study sites, leaf samples from aphid and control treatments were analyzed to measure variation with degree of …

The Plant Species Composition, Diversity And Natural Regeneration Of Indigenous Trees In The Disturbed Ruvu South Forest Reserve, Tanzania, Cosmas Mligo

Tanzania Journal of Science

Ruvu Forest Reserve is among coastal forests in Tanzania that has been impacted by the increased anthropogenic activities. It was determined the plant species composition, diversity and indigenous trees regeneration growth size structure in the degraded Ruvu South Forest. Transect method was used to collect data that were treated using t-test. A total of 110 plant species distributed among 38 families were recorded such that Holarrhena pubescens, Hymenocardia ulmoides, Millettia micans, Ochna mossambicensis, Pseudolachnostylis maprouneifolia and Strychnos madagascariensis were the most common trees in moderately disturbed site, whereas Albizia versicolor, Pteleopsis myrtifolia, Pterocarpus angolensis, Antiaris toxicaria, Diplorhynchus condylocarpon and Terminalia …

Water Quality Of Gilmore Creek In Winona, Minnesota, Megan Diesslin

Undergraduate Research Celebration 2018

No abstract provided.

Energetic Tradeoffs Control The Size Distribution Of Aquatic Mammals, William Gearty, Craig R. Mcclain, Jonathan Payne

School of Biological Sciences: Faculty Publications

Four extant lineages of mammals have invaded and diversified in the water: Sirenia, Cetacea, Pinnipedia, and Lutrinae. Most of these aquatic clades are larger bodied, on average, than their closest land-dwelling relatives, but the extent to which potential ecological, biomechanical, and physiological controls contributed to this pattern remains untested quantitatively. Here, we use previously published data on the body masses of 3,859 living and 2,999 fossil mammal species to examine the evolutionary trajectories of body size in aquatic mammals through both comparative phylogenetic analysis and examination of the fossil record. Both methods indicate that the evolution of an aquatic lifestyle …

Gdf-15 As A Biomarker For Glaucoma, Caylee Pattison

Honors Theses

Biomarkers are measurable substances in an organism that are indicative of some phenomenon. Examples of biomarkers in clinical settings are body temperature and blood pressure. Body temperature is indicative of a fever while blood pressure can be used to monitor someone’s risk of a stroke. Previous studies have investigated the possibility of there being a potential biomarker for glaucoma. One possible biomarker identified is growth differentiation factor 15 or GDF15. These studies prompted a study in our lab using a rat glaucoma model. The objective of this study was to show there is a biomarker present for the neurodegenerative disease, …

The Combined Effects Of Atrazine And Tetracycline On Primary Producers And Zooplankton In Freshwater Microcosms, Madison R. Kelly

Honors College Theses

Widespread use of agrochemicals such as herbicides and antibiotics increases their likelihood of entering aquatic systems in mixture. Despite different modes of action, atrazine (herbicide) and tetracycline (antibiotic) adversely affect non-target photosynthetic organisms, such algae and macrophytes, with the potential to reduce food availability to higher trophic levels. However, the effects of simultaneous exposure to both contaminants have yet to be determined. I hypothesized that a mixture of atrazine and tetracycline affects freshwater communities differently than each compound alone. A microcosm experiment was conducted to test effects of environmentally relevant concentrations of atrazine (1 μg L^-1) and tetracycline …

Canis Aureus (Carnivore: Canidae), Patricia D. Moehlman, Virginia Hayssen

Biological Sciences: Faculty Publications

Canis aureus (Linnaeus, 1758), the golden jackal, is a medium-sized, wide spread, terrestrial carnivore. It is 1 of 7 species found in the genus Canis. It ranges from Africa to Europe, the Middle East, Central Asia, and Southeast Asia. Due to its tolerance of dry habitats and its omnivorous diet, C. aureus can live in a wide variety of habitats. It normally lives in open grassland habitat but also occurs in deserts, woodlands, mangroves, and agricultural and rural habitats in India and Bangladesh. It ranges from sea level in Eritrea to 3,500 m in the Bale Mountains …