Biology Commons^™

The Hippo Pathway Effector Yki Downregulates Wg Signaling To Promote Retinal Differentiation In The Drosophila Eye, Erika Lynn Wittkorn, Ankita Sarkar, Kristine Garcia, Madhuri Kango-Singh, Amit Singh

Biology Faculty Publications

The evolutionarily conserved Hippo signaling pathway is known to regulate cell proliferation and maintain tissue homeostasis during development. We found that activation of Yorkie (Yki), the effector of the Hippo signaling pathway, causes separable effects on growth and differentiation of theDrosophila eye. We present evidence supporting a role for Yki in suppressing eye fate by downregulation of the core retinal determination genes. Other upstream regulators of the Hippo pathway mediate this effect of Yki on retinal differentiation. Here, we show that, in the developing eye, Yki can prevent retinal differentiation by blocking morphogenetic furrow (MF) progression and R8 specification. …

Seasonal Variation In Corticosterone, Stress Responses, And Physiology In The Northern Cardinal Cardinalis Cardinalis, Benjamin Matthew Duckworth

Master's Theses

Seasonal regulation of the adrenocortical response (e.g., ‘stress response’) appears to be ubiquitous in mid- to high-latitude vertebrates. Northern Cardinals (Cardinalis cardinalis) are a Temperate dwelling passerine of Tropical-descent with a wide species range (tropics to Northern Temperate zones). This species encounters a wide variety of environmental conditions and strong seasonality, however corticosterone (CORT, the main adrenal stress hormone) has not been studied with regards to changes in seasonal levels. I initially analyzed samples from cardinals collected between 2007-2011 from the Lake Thoreau Environmental Research and Educational Center (Hattiesburg, Mississippi, USA). The data suggested seasonal differences of CORT, with higher …

Stressed Induced Changes In Karenia Brevis Ribosomal Rna, David Scott Jayroe

Master's Theses

Karenia brevis is a toxic marine dinoflagellate that causes harmful algal blooms (HABs), also known as red tides, in the Gulf of Mexico. These blooms are responsible for massive fish kills, shellfish bed contaminations, adverse human health effects, and vast economic loss. For these reasons, extensive research has gone into understanding the mechanisms and dynamics of bloom behavior by studying K. brevis in the field and in the lab. In order to understand higher order bloom behavior and dynamics it is imperative to understand K. brevis at the cellular level. In growing K. brevis in vitro under a variety of …

Mixed Ancestry And Admixture In Kauai's Feral Chickens: Invasion Of Domestic Genes Into Ancient Red Junglefowl Reservoirs, Eben Gering, M. Johnsson, P. Willis, T. Getty, D. Wright

Biology Faculty Articles

A major goal of invasion genetics is to determine how establishment histories shape non‐native organisms' genotypes and phenotypes. While domesticated species commonly escape cultivation to invade feral habitats, few studies have examined how this process shapes feral gene pools and traits. We collected genomic and phenotypic data from feral chickens (Gallus gallus) on the Hawaiian island of Kauai to (i) ascertain their origins and (ii) measure standing variation in feral genomes, morphology and behaviour. Mitochondrial phylogenies (D‐loop & whole Mt genome) revealed two divergent clades within our samples. The rare clade also contains sequences from Red Junglefowl (the …

Group Housing And Social Stress In Side-Blotched Lizards (Uta Stansburiana), Marilize Van Der Walt

Undergraduate Honors Capstone Projects

Stress in regards to an animal's social housing environment is well studied in mammals; however there are few studies examining this in reptiles and the results are thus far unclear. For example, behavioral evidence shows adverse effects from individual housing in juvenile chameleons, however physiological measures in whiptail lizards show adverse effects from group housing. Because some reptiles appear to be affected negatively by their social housing environment while others are impacted positively, if we can discover the reason for these differences, we will be able to implement the most effective housing regimes for reptiles. In this study, we tested …

The Impact Of Anthropogenic Noise On Northern Saw-Whet Owl (Aegolius Acadius) Hunting Behavior, James Tate Mason

Boise State University Theses and Dissertations

Anthropogenic noise has increased dramatically worldwide which has negatively impacted wildlife. The effect of noise on acoustically specialized predators has received limited attention. Here I demonstrate that noise generated by a natural gas compressor station degrades the ability of the northern saw-whet owl (Aegolius acadius) to detect and capture prey in the absence of light. The saw-whet owl is considered an acoustic specialist because it exhibits a high degree of ear asymmetry, an adaptation for precise three-dimensional sound localization in birds. I presented 31 wild-caught saw-whet owls with mice (Mus musculus) inside a flight tent under …

Role Of Monocyte Chemoattractant Protein-1 During Liver Regeneration, Stephanie Wyler

Boise State University Theses and Dissertations

Liver regeneration is a complex process that requires the coordinated expression of cytokines and growth factors. One well-studied model of liver regeneration is partial hepatectomy (PH), in which removal of 70% of the liver initiates compensatory hepatocyte proliferation. PH-induced liver regeneration requires the activation of resident macrophages (Kupffer cells), which produce cytokines that drive hepatocyte proliferation. Monocyte chemoattractant protein-1 (MCP-1) is a chemokine that is known to activate macrophages and recruit monocytes during tissue injury. The goal of this study was to determine how MCP-1 contributes to macrophage activation during liver regeneration. Results indicate that hepatic and plasma MCP-1 levels …

Hypohydration And Glucose Regulation In Adult Males With Type Ii Diabetes Mellitus, Weldon Murry

Biological Sciences Undergraduate Honors Theses

Daily total water intake (TWI) has been linked to a number of chronic diseases, such as urolithiasis and chronic kidney disease. Additionally, epidemiological and animal model data have tied low TWI to impaired blood glucose regulation. However, the effect of a fluid intake intervention on blood glucose regulation has not yet been observed in humans. PURPOSE: Thus, the purpose of the current investigation is to determine if the response to an oral glucose tolerance test (OGTT) is altered by manipulation of hydration status in people with diabetes. METHODS: Nine men (53±9 y, 94.9± 23.8 kg, 1.75± 0.11 m, 30.0± 4.3 …

Evolutionary Analysis Of The Genomic Region Of Foxp3 In Vertebrates, Ethan G. Guffey

Biological Sciences Undergraduate Honors Theses

The Human FOXP3 gene plays a role in immunosuppression, which includes the suppression of the maternal immune system to allow the growth of a semi-foreign fetus inside her uterus. This has lead scientists to hypothesize that FOXP3 gene played a crucial role in the development of viviparous species. FOXP3 is highly conserved across Eutherian mammals, but the degree of conservation in other viviparous species has not been investigated. This study found that FOXP3 orthologs are much less highly conserved in aplacental species and may be more closely related to other members of the FOXP gene family than to the FOXP3 …

Clinical Microendoscopy For The Mapping Of Tumor Margins Using A Support Template For Near-Continuous Imaging, Chantal Marie Soobhanath

Biological Sciences Undergraduate Honors Theses

Colorectal cancer is the second leading cause of cancer related death in the United States, and the third most common cancer in men and women. This disease is largely asymptomatic and goes unnoticed until the disease has progressed to a later stage. The conventional method of screening and diagnosis of colorectal cancer is white light colonoscopy with biopsy. This technique, although very effective, is limited to the observation of reflected visible light from the mucosal surface of the tissue. As such, regions of occult dysplasia cannot be observed using this diagnostic tool. Hence, this limitation has led to the need …

Developing Double Mutant Arabidopsis Plants Deficient In Fatty Acid Desaturase 7 And A Salicylic Acid Pathway Regulator, Npr1-1, Alexys Marrufo

Biological Sciences Undergraduate Honors Theses

Salicylic acid (SA) is one of several molecules whose accumulation is known to stimulate the synthesis of defense genes in Arabidopsis thaliana as well as in other green plants. Fatty acid desaturase 7 is a cytoplasmic desaturase that introduces double bonds into fatty acids. In previous experiments on both Arabidopsis thaliana and tomato (Solanum lycopersicum), it was observed that a loss of function mutation in FAD7 coincided with an increase in SA accumulation in plant cells. Additionally, in those experiments, plants displaying the fad7-1 mutation displayed increased resistance when challenged with aphids as compared to WT Arabidopsis possessing functional FAD7. …

The Differential Splicing Of The Socs2 5’Utr, A Gene Involved In Successful Central Nervous System Axon Regeneration In Xenopus Laevis, Megan Gura

Biological Sciences

The amphibian Xenopus laevis has the ability to regenerate axons of its optic nerve even after metamorphosis. From previous studies done in our lab, we found that Suppressor of Cytokine Signaling 2 (SOCS2) could be involved in the complex pathway of genes regulating nervous system development and regeneration. 3’ and 5’ Rapid Amplification of cDNA Ends (RACE) revealed that the 5’ untranslated region (UTR) of SOCS2 contains two splice forms. One splice form contained a previously unidentified 68 base pair exon, which will be referred to as ‘Exon 2’, which we hypothesized is involved in post-transcriptional regulation of SOCS2. I …

Identifying Genes That Affect Lactococcus Lactis Intron Mobility, Mary Njie

Biological Sciences

A gene consists of coding segments, exons, which are maintained and contribute to the final mRNA product, while non-coding segments, introns, are spliced out through RNA splicing mechanisms to code a functional gene. The mobility of the spliced introns and factors that affect mobility are an important field of study evolutionarily whereas splicing defects have medical implications. For this study, the genome of the Lactococcus lactis bacterial strain, IL1403 and the group II intron of interest, L1.LtrB were utilized. This intron moves into new sites on DNA by a process termed retrotransposition (RTP). Our goal is to identify genes that …

The Rck/P54 Prion-Related Domain And Its Influence On The Localization And Function Of Rck/P54 During Hcv Infection, Lindsey Oltz

Biological Sciences

Currently over 180 million people are infected with Hepatitis C virus (HCV) worldwide. HCV infection is a major cause of hepatocellular carcinoma (HCC), liver cirrhosis, and chronic hepatitis. The available antiviral treatment of interferon and ribavirin has limited success, is costly and toxic. Furthermore, there is no vaccine. An increased understanding of how HCV exploits the many cellular pathways and host factors during infection will provide information necessary for the development of novel anti-HCV therapies, which target host proteins rather than the rapidly evolving viral proteins. During infection, HCV interacts with and manipulates many host mRNA pathways. The Pager lab …

Pathological Effects Of Repeated Concussive Tbi In Mouse Models: Periventricular Damage And Ventriculomegaly, Richard H. Wolferz Jr.

Honors Scholar Theses

Repeated concussive traumatic brain injury (rcTBI) is the most prominent form of head injury affecting the brain, with an estimated 1.7 million Americans affected each year (Kuhn 2012). Neurologists have been concerned about the danger of repeated head impacts since the 1920’s, but researchers have only begun to understand the long-term effects of rcTBI (McKee 2009). Although symptoms can be as mild as dizziness, current research suggests that multiple concussions can lead to a progressive degenerative brain disease known as chronic traumatic encephalopathy (CTE) (Luo 2008, McKee 2009, Kane 2013). Research on the brain is just beginning to scratch the …

Manipulation Of The Microbiome And Its Impact On Functional Recovery Following Ischemic Stroke, Michal Jandzinski

Honors Scholar Theses

Each year, nearly 800,000 individuals residing in the United States will have a stroke. Of these, about 130,000 cases will prove fatal while many of the survivors will be forced to live with disability for the remainder of their lives. Out of all strokes over 87% are ischemic strokes. The widespread incidence of this debilitating condition costs the United States an estimated $36.5 billion dollars every single year. Despite this, clinicians are armed with very little to combat the disease. Recent research developments have brought about the rise in awareness about the importance of the microbiome, the various gut flora …

Characterization Of Continuously Oscillating Neurons (Cons) Of The Medial Septum Of Rats, Nadia Noel Carreon

Theses and Dissertations - UTB/UTPA

Theta oscillation is the largest extracellular synchronous signal that can be recorded from the mammalian brain. It is known to influence information retention in the hippocampus, which plays a key role in declarative memory, recognition memory, working memory, and spatial memory. The theta oscillation field frequency is between 3 and 12 Hz and is present during exploratory behavior and sleep in rodents. Theta rhythm in the hippocampus is postulated to be produced by the rhythmical activity of pacemaking cells in the medial septumvertical limb of the diagonal band of Broca (MS-vDBB). Previous work in our laboratory demonstrated the existence of …

Differential Gene Expression Between Two Developmental Stages Of The Gené'S Organ In The Cattle Fever Tick, Rhipicephalus (Boophilus) Microplus, Jason P. Tidwell

Theses and Dissertations - UTB/UTPA

The southern cattle fever tick (SCFT), Rhipicephalus microplus, is considered the most economically important ectoparasite of livestock worldwide and ranks sixth among the most pesticide resistant arthropods globally. This single-host hard tick is a vector of the infectious agents causing bovine babesiosis and anaplasmosis. The estimated impact of these SCFT-borne diseases on the livestock industry in the world is $7 billion annually. This project focuses on the Gené’s organ and addresses the need to identify novel targets that can serve as the basis for sustainable SCFT control strategies. Wax secreted by the Gené’s organ protects tick eggs from desiccation, bacterial …

Igfbp2 Potentiates Egfr-Stat3 Signaling In Glioma, Yingxuan Chua

Dissertations and Theses (Open Access)

Gliomas are clinically challenging brain tumors with dismal survival rates due to its infiltrative nature and ineffective standard therapy. Insulin-like growth factor binding protein 2 (IGFBP2) is a pleiotropic oncogenic protein that has both extracellular and intracellular functions. Despite a clear causal role in cancer development, the contributions of intracellular IGFBP2 to tumor development and progression are poorly understood. Here we present evidence that both exogenous IGFBP2 treatment and cellular IGFBP2 overexpression lead to aberrant activation of EGFR, which subsequently activates STAT3 signaling. Furthermore, we demonstrate that IGFBP2 augments the nuclear accumulation of EGFR to potentiate STAT3 transactivation activities, via …

Interspecific Egg Rejection As Ecological Collateral Damage From Selection Driven By Conspecific Brood Parasitism, Bruce E. Lyon, Daizaburo Shizuka, John M. Eadie

School of Biological Sciences: Faculty Publications

Distinguishing between interspecific and intraspecific coevolution as the selective driver of traits can be difficult in some taxa. A previous study of an avian obligate brood parasite, the black-headed duck, Heteronetta atricapilla, suggested that egg rejection by its two main hosts (two species of coot) is an incidental by-product of selection from conspecific brood parasitism within the hosts, not selection imposed by the interspecific parasite. However, although both species of coot can recognize and reject eggs of conspecific brood parasites, which closely resemble their own, they paradoxically also accept a moderate fraction of duck eggs (40–60%), which differ strikingly …

Exploring The Oncolytic Potentail Of A Double Knock-Out Tanapoxvirus Containing Flic Transgene, Esaw W. Kurban

Masters Theses

Since the emergence of oncolytic viruses (OVs), OVs have seen success in clinical trials and are a vital alternative treatment for cancer. Colorectal cancers are diseases which cause substantial health issues in the developed world, but current invasive treatment methods do not perform well in patients with advanced disease. We have explored the potential of tanapoxvirus (TPV) for its oncolytic virothrapy in two manners; specific gene deletion and non-targeted gene deletion. The non-targeted mutation of TPV’s genome was attempted using N-methyl-N-nitro-N-nitrosoguanidine (NTG) and N-ethyl-N-nitrosourea (ENU) as alkylating chemical. Specific gene deletion involved knocking-out a thymidine kinase gene (TPV-66R) and a …

Daily Environmental Conditions Determine The Competition–Facilitation Balance For Plant Water Status, Alexandra Wright, Stefan A. Schnitzer, Peter B. Reich

Biological Sciences Faculty Research and Publications

1. Plants compete with their neighbours for a finite set of limiting resources, and this decreases individual plant performance, growth and survival. However, neighbouring plants also affect each other in positive ways.
2. Positive facilitative effects can occur when neighbouring plants ameliorate harsh abiotic conditions (temperature, wind and high irradiation). Thus, when environmental conditions are severe, the importance of facilitation may increase. The co‐occurrence and masking effects of competition and facilitation among neighbouring plants have made it difficult to tease them apart in the past.
3. We planted bur oak acorns (Quercus macrocarpa) into an experimental diversity gradient in a central …

Atp-Citrate Lyase Links Cyclin E To Cellular Metabolism In Breast Cancer, Kim Lucenay

Dissertations and Theses (Open Access)

Cyclin E is altered or overexpressed in approximately one-third of tumors from patients with invasive breast cancer and is a powerful independent predictor for survival in women with stage I-III breast cancer. Full-length cyclin E (EL) is post-translationally cleaved into two low-molecular-weight isoforms, LMW-E (T1) and LMW-E (T2). LMW-E have been shown to exhibit greater binding affinity for cyclin-dependent kinase 2 (CDK2) , cyclin dependent kinase inhibitors (CKIs), p21 and p27, but are resistant to p21 and p27 inhibition. In addition, transgenic mice expressing LMW-E have increased mammary tumor development and metastasis compared to EL transgenic mice. Therefore, LMW-E are …

Understanding The Role Of Sumoylation In Regulating Lkb1 Function, Joan W. Ritho

Dissertations and Theses (Open Access)

Energy homeostasis in a cell is critical for its survival during metabolic stress. Liver kinase B1 (LKB1), one of the key regulators of cellular energy balance, was initially discovered as a tumor suppressor mutated in patients with Peutz-Jeghers syndrome. Germline mutations in LKB1 predispose patients to develop several benign and malignant tumors including gastrointestinal and lung cancers. In 2003, several groups demonstrated that LKB1is a major upstream kinase of the energy sensor AMP-activated protein kinase (AMPK), directly associating it with the regulation of energy balance in cells. During energy stress, LKB1 phosphorylates AMPK at threonine 172 (T172) resulting in AMPK …

Rest Regulatory Circuit Controls Distinct Oncogenic Properties Of Glioblastoma Stem Cells Through Specific Micrornas, Anantha L Marisetty

Dissertations and Theses (Open Access)

Glioblastoma Multiforme (GBM) is the most common and aggressive primary malignant brain tumor in adults. With an average survival of only 12-16 months the prognosis for GBM patients remains dismal, with less than 5% of patients surviving 5 years. New mechanism-based approaches are necessary for the management of patients with GBM. Many GBM tumors are believed to be caused by self-renewing, glioblastoma-derived stem-like cells (GSCs). These GSCs are resistant to chemo- and radiation therapies, and are believed to be responsible for tumor recurrence. In a recent paper from our lab we have shown that REST, RE1-silencing transcription factor, regulates oncogenic …

Actions Of Pi3k-Delta Inhibitor, Idelalisib, And Its Combination With Bendamustine In Chronic Lymphocytic Leukemia, Prexy Modi

Dissertations and Theses (Open Access)

Class I phosphatidylinositol 3-kinase isoforms (α, β, δ, and γ) play a major role in cancer cell growth and survival. PI3K α and β are most studied. PI3K pathway is highly dysregulated in many cancers and aberrant PI3K signaling is associated with oncogene mutations and disease progression in solid tumors and in hematologic malignancies.

Chronic lymphocytic leukemia (CLL) is driven by B-cell receptor (BCR) signaling that promotes B-cell proliferation and survival. PI3K is a critical node in BCR pathway and PI3Kδ has a pivotal role in B-cell development and maintenance and this isoform is over-expressed in many B-cell malignancies, including …

Characterization Of Putative Exbb And Exbd Leads To The Identification Of A Potential Tol-Pal System In Rhizobium Leguminosarum Atcc 14479, Valeria Barisic

Electronic Theses and Dissertations

Rhizobium leguminosarum is a Gram negative nitrogen-fixing soil bacterium. Due to the limited bioavailability of iron, bacteria utilize siderophores that scavenge and bind available iron. The transport of iron-siderophore complexes is achieved by the TonB-ExbB-ExbD complex. We have previously shown that a functional TonB protein is necessary for iron transport by creating ΔtonB mutants and assessing their growth and 55Fe-siderophore transport ability. We attempted to identify and characterize the roles of putative exbB and exbD genes using a similar approach. Growth curves and sequence analyses suggest putative exbB and exbD may be the tolpal-associated genes tolQ and tolR. Phenotypic and …

Using Whole-Genome Sequences Of The Lg/J And Sm/J Inbred Mouse Strains To Prioritize Quantitative Trait Genes And Nucleotides, Igor Nikolskiy, Donald F. Conrad, Sung Chun, Justin C. Fay, James M. Cheverud, Heather A. Lawson

Biology: Faculty Publications and Other Works

Background

The laboratory mouse is the most commonly used model for studying variation in complex traits relevant to human disease. Here we present the whole-genome sequences of two inbred strains, LG/J and SM/J, which are frequently used to study variation in complex traits as diverse as aging, bone-growth, adiposity, maternal behavior, and methamphetamine sensitivity.

Results

We identified small nucleotide variants (SNVs) and structural variants (SVs) in the LG/J and SM/J strains relative to the reference genome and discovered novel variants in these two strains by comparing their sequences to other mouse genomes. We find that 39% of the LG/J and …

Salt And The Rough-Skinned Newt (Taricha Granulosa): Evolutionary Investigations Of Local Adaptation To An Anthropogenic And Natural Stressor, Gareth Rowland Hopkins

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Amphibians are osmotically-challenged due to their highly permeable skin and egg membranes. As such, biologists have mostly ignored their occurrence in saline habitats. The goal of this dissertation was to investigate the ability of amphibians to adapt to inhabit these osmotically-stressful environments. As freshwater resources are increasingly salinized due to a combination of anthropogenic and natural stressors, including road-deicing salt application, coastal storm events, and sea-level rise, it is important to understand the abilities and constraints of sensitive organisms, like amphibians, to persist in these environments. I began by exploring what is known about amphibians inhabiting saline habitats around the …

Relationships Between Water Developments And Select Mammals On The U.S. Army Dugway Proving Ground, Utah, Bryan M. Kluever

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Water is essential to life. Three general forms of water exist: pre-formed water that is available in food, metabolic water that is created as a byproduct of life processes (e.g., metabolism of fat or breakdown of carbohydrates), and free water (i.e., water available for drinking). As humans settle arid environments, the addition of man-made free water sources (e.g., sewage ponds, catchment ponds) often occurs. In addition, a tool commonly used to increase the abundance or distribution of wildlife species in desert environments is the addition of water sources, usually specifically designed to benefit game species like bighorn sheep (Ovis …