Biodiversity Commons^™

An Assessment Of Functional Characteristics In Macroinvertebrates And Fishes In The Lower Ogeechee River, Molly A. Mckeon

College of Graduate Studies: Theses & Dissertations

The southeastern United States is a hotspot for aquatic biodiversity; yet this region is also considered vulnerable to climate and land–use changes. The Ogeechee River is an unimpeded blackwater river in Georgia that drains into the Atlantic Ocean and a unique ecosystem due to the preservation of its natural state; Historically, research conducted in the river establishes a baseline for long-term ecological studies. The aim of this study is to compare aquatic macroinvertebrate and fish community composition data collected in 2014 to 2017 to a recently collected dataset from 2023 and document temporal changes. Water quality monitoring was performed throughout …

Quantifying Public Support For Culling Crown-Of-Thorns Starfish (Acanthaster Spp.) On The Great Barrier Reef, Stewart Lockie, Henry A. Bartelet, Brent W. Ritchie, Lintje Sie, Gillian Paxton

Quantitative Methods and Information Technology Faculty Publications

Population surges of crown-of-thorns starfish (COTS) (Acanthaster spp.) are a leading cause of coral cover loss on Australia's Great Barrier Reef (GBR). While COTS culling has been undertaken since 2012 little is known about how the public perceive COTS culling or how perceptions vary among social groups. Drawing on survey data collected in 2018 and 2022 we test the relative influence of demographic variables, social and institutional variables, and beliefs concerning the risks and benefits of culling, on public acceptance for the culling of COTS on the GBR. In contrast with previous research suggesting a polarization of views, we found …

Temporal Distribution Of Potential Waterborne Pathogens In Sequiota Spring, William J. Durstock

Graduate Theses/Dissertations

Waterborne pathogens from human fecal matter pose a significant health risk in karst environments, where domestic wastewater can easily be transferred to the shallow groundwater system via old, leaky septic tanks and damaged sewer lines. This study monitored fecal indicator bacteria (FIB) and potential pathogens in Sequiota Spring located in the karst region of southwest Missouri, using Microbial Source Tracking (MST) and Illumina DNA sequencing of bacterial 16S rRNA genes. MST identified high levels of human fecal indicator bacteria (HFIB) (up to 110,000 cells/L) in July 2020. By June 2022, HFIB levels had dropped significantly (55-fold reduction) after the City …

Effects Of Subchronic Oral Pfos Exposure Via Drinking Water On Gut Microbiota Composition, Emma Ann Loder

Graduate Theses/Dissertations

Perfluorooctanesulfonic acid (PFOS) has been phased out of production in the United States, but because of its resistance to degradation and its persistence in the environment, PFOS can be found in drinking water across America. Oral exposure to PFOS has been linked to adverse developmental, immunological, hepatic, and endocrine health. Oral PFOS exposure may alter the gut microbiota and cause dysbiosis, which is implicated in the pathology of inflammatory diseases like Crohn’s disease, diabetes, and ulcerative colitis. The goal of the study was to investigate the effects of subchronic oral PFOS exposure on the composition of the gut microbiota. Adult …

How Environmental Variation Affects Bumblebee Cognition And The Gut Microbiome, Parker Madison Campbell

Graduate Theses/Dissertations

This master's thesis examines the influence of environmental variables on cognitive processes in Bombus impatiens, focusing on the effects of ingested microbial communities on gut microbiota and their subsequent impact on associative color learning. The study implemented controlled feeding trials with isolated microbe species (Candida bombi, Metschnikowia reukaufii, Lactobacillus micheneri and a control with no microbes) to analyze shifts in gut microbial composition in foraging bees. Results indicated minor alterations in the microbial profiles of bees, yet no statistically significant correlation was found between these modifications and variations in learning or memory performance. Furthermore, the study assessed the impact of …

Variation In Las Vegas Tree Diversity Based On Socioeconomic Status, Fabrizio Ciccone

Calvert Undergraduate Research Awards

An increased level of plant biodiversity has been observed in urban communities of above average socioeconomic status. This phenomenon was previously termed the luxury effect. This study aimed to identify potential disparities in tree diversity of different communities across Las Vegas and Henderson. Communities were selected based on the zip code’s median income for 2023; this information was gathered from the Healthy Southern Nevada database. Public parks were chosen from a range of zip codes, with trees initially being identified with PictureThis, then cross-referenced with Southern Nevada Water Authority’s regional plant list for validity. Trees were counted, identified, and …

Effects Of Land Cover Changes And Hydropower Development On Fish Communities In Amazonian Floodplain Rivers, Samuel Baron Grinstead Hessburg

Graduate Theses, Dissertations, and Problem Reports (ETD)

In Amazonian River systems, diverse fish communities depend on the floodplains for providing feeding opportunities and critical spawning habitat during the seasonal flood pulse, which annually submerges floodplain forests. In the Amazon, large-scale deforestation and hydroelectric dam construction can have profound impacts on entire ecosystems by altering river-floodplain connectivity. This study attempts to improve understanding of Amazonian fish responses to these two stressors. The first chapter aims to understand how deforestation impacts floating meadow fish assemblages. For this study, we surveyed fish in floodplain lakes along the lower Amazon River, recording their abundance in relation to forest cover and local …

Population Viability Of Egyptian Tortoises: Analyzing Demographics Sensitivities And Extinction Risk In North Sinai, Basem Ahmed Rabia Motwaly

Graduate Theses/Dissertations

This study investigated the population viability of the critically endangered Egyptian Tortoise (Testudo kleinmanni) across five populations in North Sinai, Egypt. The research aimed to assess demographic sensitivities, extinction risks, and the influence of environmental variables to guide conservation strategies. Using multistate mark-recapture models within a Bayesian framework, survival, transition, and recapture probabilities were estimated across life stages, integrating site-specific environmental data such as the Normalized Difference Vegetation Index (NDVI). The analysis revealed stark contrasts between populations, with three sites demonstrating high extinction risk due to lower juvenile survival and limited recruitment. In contrast, two populations exhibited demographic …

The Sewage Microbiome Dynamics Of Different Serving Neighborhoods In Charleston, Illinois, Sandra Chiamaka Okoye

Masters Theses

The complex microbial ecosystem within sewage systems holds significant implications for environmental and public health. Unlike studies on wastewater treatment plant microbiomes, upstream sewage systems have not been studied widely. This research investigated the dynamic sewage microbiome across diverse serving neighborhoods in Charleston, Illinois, encompassing residential, hospital, industrial, and university areas. Drawing upon recent advancements in microbiome research, the study aimed to unravel the spatial and temporal variations in microbial structures. Three times between June to December 2023 sewage samples were collected from manholes in the areas mentioned above. Community DNA was extracted and sequenced for the V4-V5 region of …

Assessing Tropical Mammal Diversity And Distribution Using Noninvasive Methods, Tiff L. Degroot

Dissertations, Master's Theses and Master's Reports

Central African tropical forests are rich in biodiversity and home to some of Earth’s most threatened mammals. However, mammals in the region are under increasing threat from habitat loss and degradation, coupled with an increased demand for wild meat. To conserve mammals, wildlife managers and community-led conservation efforts must understand the distribution and diversity of mammal communities. However, funding and logistical challenges make contemporary survey methods, e.g. ground surveys, difficult and expensive. Noninvasive methods allow efficient mammal diversity surveys with minimal field effort. Here, we use camera trapping and invertebrate-derived environmental DNA (“iDNA”) to assess mammal diversity and distribution in …

Benthic And Epibenthic Invertebrate Assemblages Associated With Estuarine Submerged Aquatic Vegetation Differ Between Native And Invasive Plants, Marissa Hall, Kathryn O'Shaughnessy, Bethany Kiley, Ashley Mcdonald, Taber Faurie, Zoey Hendrickson, Anna Reimer, Samantha Smith, Charles Martin

Gulf and Caribbean Research

Estuarine submerged aquatic vegetation (SAV) provides vital habitat for macroinvertebrate communities that support diverse food webs and subsequent ecosystem services. Invasive SAV, however, has the potential to alter estuarine food webs through competition with native SAV, resulting in different associated biological communities. In the Mobile-Tensaw Delta (Alabama, USA), the invasive Eurasian milfoil, Myriophyllum spicatum, is fast becoming the dominant SAV, out-competing native SAV such as wild celery, Vallisneria americana. This study investigated the above- and belowground macroinvertebrate assemblages associated with these SAV habitats. We found significantly different assemblages between the SAV, with V. americana supporting more even and …

Investigating The Relationships Between Biotic And Abiotic Factors Affecting Migratory Behavior In Westslope Cutthroat Trout Within The Priest River System, Kyle M. Keenan

EWU Masters Thesis Collection

Numerous salmonid species demonstrate diverse life histories, encompassing both resident and migratory behaviors. Migratory life histories play a pivotal role in maintaining metapopulations for various reasons, facilitating genetic exchange between populations and yielding larger-sized females with increased fecundity relative to residents. This study took place in northern Idaho, within the lower Priest River system, which is highly susceptible to degrading habitat. Previous research has discovered this system as a significant contributor to migratory Westslope Cutthroat Trout (Oncorhynchus lewisi, WCT) in the Lake Pend Oreille and Priest River systems. Expanding on these results, we compared four Priest River tributaries that produced …

Coexistence Conservation: Time To Change The Paradigm, Jorge Tobajas

Human–Wildlife Interactions

This letter to the editor recommends that coexistence conservation should be recognized as a new discipline within conservation biology with vast potential for the future of biodiversity conservation. The term “coexistence conservation” must be broadened to accommodate different techniques and their development, regardless of the context of invasive species.

Regular Surveys Rescue Wildlife: What A Lucky And Unlucky Individual Tsukuba Clawed Salamander, Chia-Hsuan Hsu, Jiefeng Kang

Human–Wildlife Interactions

The Tsukuba clawed salamander (Onychodactylus tsukubaensis), native to Japan's Tsukuba mountain areas, faces peril from human activities and climate change. Classified as critically endangered by both the Japanese Ministry of Environment and the IUCN Red List, limited research has been conducted since its identification as a distinct species. Monthly surveys initiated in August 2023 aimed to understand its ecology. During a December 2023 survey, a remarkable encounter unfolded: a trapped individual salamander was discovered, initially assumed dead but miraculously alive. Despite an ulcerated tail wound, the salamander's survival presents a hopeful outcome for this endangered species. Uncertain of …

Better Understanding The Barred Owl, Adam Lee Potts

Graduate Student Theses, Dissertations, & Professional Papers

This thesis research presents an analysis of barred owl nest site selection in an understudied region of their expanded range. The barred owl has dramatically expanded its range westwards over the last 150 years, prompting multiple conflicting reinterpretations of their species account. Hypotheses of range expansion are reviewed to provide context for this study’s research. This study gathers empirical data on nest site selection in the mixed conifer forests of Montana’s Seeley-Swan and Mission Valleys. Eight barred owl nests were located following extensive territory surveys. Field measurements of tree height and diameter using USFS Forest Inventory and Analysis (FIA) plot …

Interactions Between New Zealand Mud Snails (Potamopyrgus Antipodarum) And Toxic Cyanoabacteria (Anabaena) In Baduwa’T (Mad River), Humboldt County, California, Cecilia F. Kennelly

Cal Poly Humboldt theses and projects

Invasive species in freshwater systems are circulated around the globe, wreaking havoc on natural communities. The New Zealand mud snail (Potamopyrgus antipodarum) is a very successful aquatic invader that has established populations in freshwater streams, lakes, and rivers around the globe. The goal of this project was to evaluate the interactions of invasive New Zealand mud snails (NZMS) and toxic cyanobacteria Anabaena in the Mad River in Humboldt County, California. These two species of concern are found in similar habitats along the river, but their whether NZMS consume Anabaena or affect toxin production is unknown. First, I conducted …

Endophytic Fungi Associated With Galls And Host Plants Of Asphondylia Borrichiae (Diptera: Cecidomyiidae), Shannon Lynn Sharpe

UNF Graduate Theses and Dissertations

Asphondylia borrichiae, like other gall-forming gnats, are obligate symbionts to the endophytic fungi (EF) they deposit when laying eggs. Asphondylia spp. and EF are important biocontrol agents, yet details surrounding their diversity, life cycles, and host interactions remain poorly understood. Galls and leaf-stem tissues from two host plants were surveyed to identify and compare EF diversity between the host tissues and species of A. borrichiae. Identification of 114 isolates was carried out by sequencing the internal transcribed spacer (ITS 1/4 primers). Pairwise alignments in multiple genetic databases were bolstered by phylogenetic analyses using maximum parsimony and maximum likelihood …

Complex Dynamics Of Coral Gene Expression Responses To Low Ph Across Species, Veronica Z. Radice, Ana Martinez, Adina Paytan, Donald C. Potts, Daniel J. Barshis

Biological Sciences Faculty Publications

Coral capacity to tolerate low pH affects coral community composition and, ultimately, reef ecosystem function. Low pH submarine discharges (‘Ojo’; Yucatán, México) represent a natural laboratory to study plasticity and acclimatization to low pH in relation to ocean acidification. A previous >2‐year coral transplant experiment to ambient and low pH common garden sites revealed differential survivorship across species and sites, providing a framework to compare mechanistic responses to differential pH exposures. Here, we examined gene expression responses of transplants of three species of reef‐building corals (Porites astreoides, Porites porites and Siderastrea siderea) and their algal endosymbiont communities …

Half Of Atlantic Reef-Building Corals At Elevated Risk Of Extinction Due To Climate Change And Other Threats, Luis Gutierrez, Beth Polidoro, David Obura, Francoise Cabada-Blanco, Christi Linardich, Emma Pettersson, Paul Pearce-Kelly, Krista Kemppinen, Juan Jose Alvarado, Lorenzo Alvarez-Filip, Anastazia Banaszak, Pilar Casado De Amezua, James Crabbe, Aldo Croquer, Joshua Feingold, Elizabeth Goergen, Stefano Goffredo, Bert Hoeksema, Danwei Huang, Emma Kennedy, Diego Kersting, Marcelo Kitahara, Petar Kružić, Margaret Miller, Flavia Nunes, Juan Pablo Quimbayo, Andrea Rivera-Sosa, Rosa Rodríguez-Martínez, Nadia Santodomingo, Michael Sweet, Mark Vermeij, Estrella Villamizar, Greta Aeby, Khatija Alliji, Daniel Bayley, Elena Couce, Benjamin Cowburn, C. Isabel Nuñez Lendo, Sean Porter, Kaveh Samimi-Namin, Tom Shlesinger, Bryan Wilson

Biological Sciences Faculty Publications

Atlantic reef-building corals and coral reefs continue to experience extensive decline due to increased stressors related to climate change, disease, pollution, and numerous anthropogenic threats. To understand the impact of ocean warming and reef loss on the estimated extinction risk of shallow water Atlantic reef-building scleractinians and milleporids, all 85 valid species were reassessed under the IUCN Red List Categories and Criteria, updating the previous Red List assessment of Atlantic corals published in 2008. For the present assessment, individual species declines were estimated based on the modeled coral cover loss (1989–2019) and projected onset of annual severe bleaching events (2020–2050) …

Moth Species Diversity, Composition And Abundance In Different Land Use Types Of Chebera Churchura National Park And Its Surroundings, Southwestern Ethiopia, Gebreegziabher Hailay, Emana Getu

Journal of Bioresource Management

Land use change and habitat fragmentation affect biodiversity through an increasing level of disturbance and destruction of natural habitats. The present study is the first report on species diversity, species composition, and abundance of moth fauna in and around Chebera Churchura national park. During the survey from January to June 2021, 6206 specimens were collected from 105 species and 11 families from the 3 land use types. Based on the number of species, the family Erbidae is the most abundant with 41 species, and the family Pyraldae was the least abundant with one species. Based on the number of individuals, …

Establishment Of Hand Rearing Protocols With Respect To Feeding, Physiological And Behavioral Aspects In Abandoned Lion Cubs At Safari Zoo Lahore, Muhammad Azhar, Bushra Nisar Khan, Fahd Haseeb, Muhammad Hassan Saleem, Abdul Rehman, Zahid Iqbal Khan, Muhammad Rizwan Khan

Journal of Bioresource Management

African lion (Panthera leo) being most attractive but vulnerable exhibit of zoos and safaris; need particular attention to breeding plans. At captive sites, lioness neglects newborns commonly; at that stage, hand rearing is preferred. This study will highlight the best practices for hand-rearing lion cubs, including knowledge of early medical issues along with their treatment during the first 4 months of growth. 34 lions (08Male: 17Females: 9Cubs) were housed on 15 acres during 2019-21 at Safari Zoo Lahore. A total of 04 lionesses were found entirely abandoned to 05 newborns (03 males & 02 females). The hand-rearing period …

Reducing Food Scarcity: The Benefits Of Urban Farming, S.A. Claudell, Emilio Mejia

Journal of Nonprofit Innovation

Urban farming can enhance the lives of communities and help reduce food scarcity. This paper presents a conceptual prototype of an efficient urban farming community that can be scaled for a single apartment building or an entire community across all global geoeconomics regions, including densely populated cities and rural, developing towns and communities. When deployed in coordination with smart crop choices, local farm support, and efficient transportation then the result isn’t just sustainability, but also increasing fresh produce accessibility, optimizing nutritional value, eliminating the use of ‘forever chemicals’, reducing transportation costs, and fostering global environmental benefits.

Imagine Doris, who is …

Comprehensive Assessment Of Economic, Productive, Phenotypic, And Morphometric Traits In Azikheli Buffalo Breed Of Northern Pakistan, Nadar Khan, Bakhtawara Bibi, Tariq Ahmad, Salman Khan, Aamir Khan, Muhammad Ibrahim

Journal of Bioresource Management

The study was conducted to illuminate the phenotypic, morphometric, and productive characteristics of the Azikheli buffalo breed. One thousand two hundred pure Azikheli buffaloes (male: female) were randomly selected from the main hub of the Azikheli buffalo breed in Swat (Azikhel). The data were analyzed for comparison and frequency distribution. Phenotypic characteristic of the female buffalo shows that more than 73 % of the body color was golden yellowish. In contrast, in males, this value was 83 %, followed by white-albino and grayish colors. The shape of horns were semi sickle and grayish in color. Morphometric parameters of the breed …

Population Density Of Grey Francolin (Franclinus Pondicrianus L.) In District Tando Allahyar, Sindh, Pakistan, Rameez Raja Kaleri, Hubdar Ali Kaleri, Ghulam Mustafa Solangi, Raza Ali Mangi, Abdul Wahid Solangi, Zahid Ali Mangrio, Farooque Ahmed Khushk, Muhammad Anees Memon, Muhammad Awais Soomro, Depeesh Kumar Bhuptani, Imran Ahmed

Journal of Bioresource Management

The population density of Grey Francolin (Franclinus pondicrianus L.) is distributed throughout the Baluchistan, KPK, Punjab, and Indus plains of Sindh Province, Pakistan. The grey francolin is a prime game bird of our country. This species has been declared threatened worldwide according to the Red Data Book, also published by the International Union for Conservation of Nature in 2018. There is no information available regarding the density of the population of Grey francolin in different populations in the district of Tando Allahyar, Sindh, Pakistan. Keeping this in mind, the present study was carried out to find the density …

Developing Characteristic Resource Plants To Build A Beautiful China, Lei Shi, Zheng'an Liu, Lijun Wang, Qingyan Shu, Meiyu Sun, Wei Duan, Hui Li

Bulletin of Chinese Academy of Sciences (Chinese Version)

It is an important way to solve the contradiction among ecology, production and life in natural protected areas and ecologically fragile region by constructing the three-production integration mode of characteristic resource plants. In order to fully tap and make use of the outstanding characteristics of oil tree peony, wine grape and aromatic plants, this study carried out technology integration of variety screening, planting, harvesting, processing, product research and development, and industrialization demonstration in and around natural protected areas and ecologically fragile region. Through the economic benefits generated, the life of the people in the natural protected areas and ecologically fragile …

Innovation And Practice On Biodiversity Conservation In Sanjiangyuan National Park, Xinquan Zhao, Shixiao Xu, Liang Zhao, Tongzuo Zhang, Linyong Hu, Qi Li, Tongqing Guo

Bulletin of Chinese Academy of Sciences (Chinese Version)

Sanjiangyuan National Park, is one of the first batch of national parks in China, and serves as the largest national park in China. As an important ecological security barrier and a alpine biological germplasm resource base, it has significant conservation value in China and even in the world. Lots of protocols have been taken aiming at ecological tacking protection issues including loss of biodiversity and wildlife habitats, degradation of alpine grassland and overgrazing in Sanjiangyuan National Park. It promotes the implementation of major ecological restoration projects, and has formed the Sanjiangyuan National Park Biodiversity Conservation and Ecological Protection Program with …

Conception On Asian Elephant Ecological Corridor Planning With Implications For Conservation, Xueyou Li, Qiupeng Yu, Zhechang Hu, Xuelong Jiang

Bulletin of Chinese Academy of Sciences (Chinese Version)

In order to practice the concept of coordinated development of “Lucid Waters and Lush Mountains are Invaluable Assets” and “mountains, rivers, forests, farmlands, lakes, grasslands and deserts are part of the community of life”, this study takes “pursuing green development and promoting harmony between humanity and nature” proposed in the report of the 20th National Congress of the Communist Party of China as the theoretical guidance. With the goal of enhancing ecosystem integrity and connectivity, enhancing population communication, enhancing population viability, and providing a model for the construction of ecological corridors for flagship species, based on the current distribution and …

An Innovative Restoration Mode “Macrophytes–Fishes–Benthons–Birds” Implemented In Aesthetic Plateau Wetlands, Junxing Yang, Xiaoai Wang, Xiaofu Pan, Yuanwe Zhang, Heqi Wu, Anli Wu

Bulletin of Chinese Academy of Sciences (Chinese Version)

Affected by both increasing human activities and climate change, Yunnan Plateau lakes were faced with threats such as water level decreasing, water-body reducing, and severe pollution. Many indigenous species were endangered or even disappeared. The ecological restorations implemented since 1980s almost all used alien species. As an inevitable result, severe negative impacts from alien species were observed on the Plateau wetland ecosystem and indigenous species. To solve these problems, with the support of relevant projects, an innovative restoration mode mainly with indigenous flag-species “macrophytes – fishes – benthons – birds” was proposed. This innovative mode was implemented respectively in Dianchi …

Tropicalization Fact Sheet, Linda Walters, Carla Perscky

CEELAB Outreach Materials

The goal of this 2-sided fact sheet is to introduce the topic of tropicalization along our coastlines to young audiences and their families. Tropicalization is defined as, "the transformation of ecosystems by tropical organisms that migrate towards the poles in response to warming minimum winter temperatures."

Analyzing The Shark Paleoecology Of Coastal Georgia From The Miocene And Pliocene Epochs, Joshua Lee Clark, Benjamin Angalet

Georgia Journal of Science

The field of shark paleoecology often yields indecisive conclusions based on the limited fossilization of their anatomical structures, with the exception of their teeth. The majority of the Atlantic coast has been studied regarding the presence of certain prehistoric shark species from the Miocene, Pliocene, and Pleistocene epochs. However, information pertaining to the Georgia coast and understanding its potential community structure is relatively understudied. This study was conducted in which thousands of fossil shark specimens and subsequent marine fauna were collected from dredge spoils created by the US Army Corps of Engineers (USACE): Savannah District. A total of 5,127 fossil …