Biodiversity Commons^™

Hidden Diversity In Sardines: Genetic And Morphological Evidence For Cryptic Species In The Goldstripe Sardinella, Sardinella Gibbosa (Bleeker, 1849), Rey C. Thomas, Demian A. Willette, Kent E. Carpenter, Mudjekeewis D. Santos

Biological Sciences Faculty Publications

Cryptic species continue to be uncovered in many fish taxa, posing challenges for fisheries conservation and management. In Sardinella gibbosa, previous investigations revealed subtle intra-species variations, resulting in numerous synonyms and a controversial taxonomy for this sardine. Here, we tested for cryptic diversity within S. gibbosa using genetic data from two mitochondrial and one nuclear gene regions of 248 individuals of S. gibbosa, collected from eight locations across the Philippine archipelago. Deep genetic divergence and subsequent clustering was consistent across both mitochondrial and nuclear markers. Clade distribution is geographically limited: Clade 1 is widely distributed in the central Philippines, while …

Ground Arthropod Abundance In Switchgrass And Diverse Prairie Agroenergy Crops, Stephanie Paape, Libby Torresani, Mark C. Myers

Undergraduate Student Work

The University of Northern Iowa’s Tallgrass Prairie Center converted corn and soybean fields in the Cedar River Natural Resource Area to four mixes of perennial tallgrass prairie species. Research plots were randomly seeded with one of four treatments of native prairie vegetation including a switchgrass monoculture and a 32-species prairie mix. We studied ground arthropod abundance in Switchgrass and the 32-species prairie mix at various distances from the nearest woody edge using pitfall traps. We hypothesized that a 32-species Prairie mix would support greater numbers of ground arthropods than a Switchgrass monoculture and that ground arthropod abundance would be greater …

Grassland Bird Nest Survival In Perennial Agroenergy Crops, Libby Torresani, Stephanie Paape, Mark C. Myers

Undergraduate Student Work

Previous research had been done in 2011 and 2012 regarding bird nest survival rates in the Cedar River Natural Resource Area in Washburn, IA. Further analysis of bird nest survival rates was done in this study to research how nest age, calendar date, soil type, and vegetation type influence the success or failure of these nests. New nests were identified in the prairie plots of the Cedar River Natural Resource Area and added to the previous sample size from the original study. A sample size of 97 bird nests total and 67 Dickcissel nests –SPAM (Spiza Americana) were …

Sustainability Policy’S Inherent Dilemmas – Exemplified Via Critical Examination Of The Las Vegas Metropolitan Sustainability Campaign, Kathryn A. Zimmerman

All Master's Theses

In response to a dual problem of critical water scarcity and rapid population growth, leaders of metropolitan Las Vegas implemented a region-wide, internationally marketed sustainability campaign. Preliminary studies found that, while sustainability policy attains its rhetorical goals, solutions initiated not only perpetuate but also purposefully expand the original dual problem to justify continuous water resource acquisitions. To examine this sustainability conundrum constructed by leadership—problem-perpetuation rather than problem-resolution—a critical examination in resource management asked two basic questions: what is being sustained and by what means? Via this inquiry, specific processes by which leaders perpetuate problems can be identified; and, so-informed, new …

Behavioural Ecology Of The Black-Flanked Rock-Wallaby (Petrogale Lateralis Lateralis): Refuge Importance In A Variable Environment, Craig Pentland

Theses: Doctorates and Masters

The black-flanked rock-wallaby (Petrogale lateralis lateralis) has suffered a significant decline in its distribution in Western Australia. This has been attributed to introduced predators (predominantly the red fox) and herbivores, fire, and habitat destruction due to clearing. Although since 2001 the Department of Environment and Conservation (DEC) had begun to reintroduce this species back into its former range, little was known of the behavioural ecology of this species. Fox control in the 1980s and 1990s resulted in population increases of rock-wallabies on several reserves in the central wheatbelt of WA. However, recently these populations have rapidly declined despite continuing fox …

Molecular Phylogenetic Relationships Of North American Dermacentor Ticks Using Mitochondrial Gene Sequences, Kayla L. Perry

College of Graduate Studies: Theses & Dissertations

Dermacentor is a recently evolved genus of hard ticks (Family Ixodiae) that includes 36 known species worldwide. Despite the importance of Dermacentor species as vectors of human and animal disease, the systematics of the genus remain largely unresolved. This study focuses on phylogenetic relationships of the eight North American Nearctic Dermacentor species: D. albipictus, D. variabilis, D. occidentalis, D. halli, D. parumapertus, D. hunteri, and D. andersoni, and the recently re-established species D. kamshadalus, as well as two of the Neotropical Dermacentor species D. nitens and D. dissimilis (both formerly Anocentor). We sequenced portions of the mitochondrial …

Soil Microbial Community Distributions And Disease Suppressiveness In The Coastal Plain Of Georgia, Michael J. Sabula

College of Graduate Studies: Theses & Dissertations

This study compared the soil microbial communities of three vegetation types in the coastal plain of Georgia: 1. crop land actively in use for agricultural production, 2. transitional grassland in early stages of secondary succession, and 3. pristine unmanaged forest land. Microbial species diversity and quantities of microbial DNA were determined from each of these vegetation types at three separate locations near Statesboro, Georgia. Length heterogeneity PCR(LH-PCR) methods and subsequent analysis of fungal, bacterial, and metazoan communities by analysis of similarity (ANOSIM) revealed high within-group similarity by vegetation type, indicating land management intensity and vegetation cover is a strong determining …

Winter Survival Strategies Of Benthic Invertebrates In Temporary Habitats In A Northern Minnesota Lake, Cal Oldenburg

Journal of Earth and Life Science

During the winter months in the northern hemisphere, above 40 degrees latitude, a freezing event occurs that can last several months. Some lakes may have large portions of the shallow littoral zone frozen completely solid down into the sediments. Invertebrates affected by these events have developed survival strategies to cope with the harsh environment. The two main strategies for invertebrates in these areas are to either migrate to a different area and recolonize the original area when it becomes available again, or to burrow into the sediments and withstand the freezing. A 1- month study took place on Lake Bemidji …

The Impact Of Sea Surface Temperature On Outbreaks Of Acanthaster Planci On The Great Barrier Reef, Laura A. Grossman

Scripps Senior Theses

The causes of increasing outbreaks of Acanthaster planci on the Great Barrier Reef have been a point of hot debate in recent years. It is unknown whether the increased success is due to nutrient runoff, salinity levels, or a decrease in predation, among other possibilities. In this paper I argue that the primary influence on outbreak status is sea surface temperature. From existing literature, I demonstrate that sea surface temperature in the Great Barrier Reef has increased by 0.4°C per year over the past three decades. I attempt to tie this increase with an increase in frequency of A. planci …

Wetland Issues Affecting Waterfowl Conservation In North America, Heath M. Hagy, Scott C. Yaich, John W. Simpson, Eduardo Carrera, David A. Haukos, W.Carter Johnson, Charles R. Loesch, Fritz A. Reid, Scott E. Stephens, Ralph W. Tiner, Brett A. Werner, Greg S. Yarris

Natural Resource Management Faculty Publications

This paper summarises discussions by invited speakers during a special session at the 6th North American Duck Symposium on wetland issues that affect waterfowl, highlighting current ecosystem challenges and opportunities for the conservation of waterfowl in North America. Climate change, invasive species, U.S. agricultural policy (which can encourage wetland drainage and the expansion of row-crop agriculture into grasslands), cost and competition for water rights, and wetland management for non-waterfowl species were all considered to pose significant threats to waterfowl populations in the near future. Waterfowl populations were found to be faced with significant threats in several regions, including: the Central …

Some Aspects Of The Biology Of Monogenean (Platyhelminth) Parasites Of Marine And Freshwater Fishes, Graham C. Kearn

Harold W. Manter Laboratory of Parasitology: Library Materials

Müller was the first to describe a monogenean, collected from the skin of the halibut (Hippoglossus hippoglossus). However, he regarded the parasite as a leech and named it Hirudo hippoglossi. It was not until 1858 that its status as a monogenean was established by van Beneden and named Epibdella (now Entobdella) hippoglossi. Van Beneden published a detailed and accurate description of the parasite and one of his excellent illustrations is reproduced here. Entobdella hippoglossi is one of the largest monogeneans, measuring up to 2 cm in length. It has a smaller relative, measuring 5 to …

Successes And Challenges From Formation To Implementation Of Eleven Broad-Extent Conservation Programs, Erik A. Beever, Brady J. Mattsson, Matthew J. Germino, Max Post Van Der Burg, John B. Bradford, Mark W. Brunson

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Integration of conservation partnerships across geographic, biological, and administrative boundaries is increasingly relevant because drivers of change, such as climate shifts, transcend these boundaries. We explored successes and challenges of established conservation programs that span multiple watersheds and consider both social and ecological concerns. We asked representatives from a diverse set of 11 broadextent conservation partnerships in 29 countries 17 questions that pertained to launching and maintaining partnerships for broad-extent conservation, specifying ultimate management objectives, and implementation and learning. Partnerships invested more funds in implementing conservation actions than any other aspect of conservation, and a program’s context (geographic extent, United …

A Gray Wolf (Canis Lupus) Delivers Live Prey To A Pup, L. David Mech

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

A two-year-old sibling Gray Wolf (Canis lupus) carefully captured an Arctic Hare (Lepus arcticus) leveret alive on Ellesmere Island, Nunavut, Canada, and delivered it alive to a pup 28–33 days old. This appears to be the first observation of a Gray Wolf delivering live prey to a pup.

On The Helminth Fauna Of Small Mammals In Hustai National Park, Mongolia, Sumiya Ganzorig, Nyamsuren Batsaikhan, Katsuro Hagiwara, Scott Lyell Gardner, Kenji Baba, Buho Hoshino

Scott L. Gardner Publications

Introduction

The Hustai National Park is one of the special protected areas in Mongolia. The park is famous by the successful re-introduction of the wild horse (takhi), and its well-managed protection work. The park has a rich and diverse mammal fauna and flora. Of these, the takhi, and other large mammal species are objects of intensive research by the international researchers, but the parasitic helminth fauna in Hustai National Park is remained unknown. Species diversity of wildlife and its abundance, especially high density of both the prey and predators, might allow the presence of various parasitic and symbiotic organisms on …

Native Insect Herbivory Limits Population Growth Rate Of A Non-Native Thistle, James O. Eckberg, Brigitte Tenhumberg, Svata M. Louda

Brigitte Tenhumberg Papers

The influence of native fauna on non-native plant population growth, size, and distribution is not well documented. Previous studies have shown that native insects associated with tall thistle (Cirsium altissimum) also feed on the leaves, stems, and flower heads of the Eurasian congener Cirsium vulgare, thus limiting individual plant performance. In this study, we tested the effects of insect herbivores on the population growth rate of C. vulgare. We experimentally initiated invasions by adding seeds at four unoccupied grassland sites in eastern Nebraska, USA, and recorded plant establishment, survival, and reproduction. Cumulative foliage and floral herbivory …

Redescription Of Oligacanthorhynchus Microcephalus (Rudolphi, 1819) Schmidt 1972 (Syn. Oligacanthorhynchus Tortuosa (Leidy, 1850) Schmidt 1972) (Acanthocephala: Oligacanthorhynchidae), Dennis J. Richardson, Scott Lyell Gardner, Jonathan W. Allen Jr.

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Oligacanthorhynchus microcephalus (Rudolphi, 1819) Schmidt, 1972 was originally described from the philander opossum Caluromys philander from Brazil. Oligacanthorhynchus tortuosa (Leidy, 1850) Schmidt, 1972 was originally described from the Virginia opossum (Didelphis virginiana) in North America. Six years after describing O. tortuosa, Leidy indicated the synonomy of O. tortuosa with O. microcephalus. This taxonomic view persisted for decades until Van Cleave, in 1924, recognized the validity of O. tortuosa, apparently without examining the type material of O. microcephalus. Subsequent workers have recognized two species of Oligacanthorhynchus from New World opossums: O. microcephalus from South American …

Varestrongylus Eleguneniensis Sp. N. (Nematoda: Protostrongylidae): A Widespread, Multi-Host Lungworm Of Wild North American Ungulates, With An Emended Diagnosis For The Genus And Explorations Of Biogeography, Guilherme G. Verocai, Susan J. Kutz, Manon Simard, Eric P. Hoberg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Background: A putative new species of Varestrongylus has been recently recognized in wild North American ungulates based on the ITS-2 sequences of larvae isolated from feces during a wide geographic survey. No taxonomic description was provided, as adult specimens were not examined. Methods: Lungworm specimens were collected in the terminal bronchioles of muskoxen from Quebec, and a woodland caribou from central Alberta, Canada. The L3 stage was recovered from experimentally infected slugs (Deroceras spp.). Description of specimens was based on comparative morphology and integrated approaches. Molecular identity was determined by PCR and sequencing of the ITS-2 region of …

Air Sac Nematode Monopetalonema Alcedinis In A Belted Kingfisher (Megaceryle Alcyon) In Maryland, Usa, Ellen Bronson, Kathleen Kelly, Eric P. Hoberg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Sporadic and geographically widespread reports of parasites affecting the Belted Kingfisher (Megaceryle alcyon) have been published but few have described details of the pathology. A female, adult kingfisher was found dead in a heavily wooded area of a zoo in Maryland, USA. At necropsy, numerous sexually dimorphic, 4.4–40.5-cm adult Monopetalonema alcedinis nematodes were found tightly wound within the coelomic cavity between organs and completely filling the caudal thoracic and abdominal air sacs. Abundant, 30–60-mm diameter, larvated, thick-walled ova were found in the bronchi and parabronchi, within the mesentery, and in the serosa of multiple coelomic organs. Monopetalonema alcedinis …

Anthropogenics: Human Influence On Global And Genetic Homogenization Of Parasite Populations, Dante S. Zarlenga, Eric P. Hoberg, Benjamin Rosenthal, Simonetti Mattiucci, Giuseppe Nascetti

Harold W. Manter Laboratory of Parasitology: Faculty Publications

The distribution, abundance, and diversity of life on Earth have been greatly shaped by human activities. This includes the geographic expansion of parasites; however, measuring the extent to which humans have influenced the dissemination and population structure of parasites has been challenging. In-depth comparisons among parasite populations extending to landscape-level processes affecting disease emergence have remained elusive. New research methods have enhanced our capacity to discern human impact, where the tools of population genetics and molecular epidemiology have begun to shed light on our historical and ongoing influence. Only since the 1990s have parasitologists coupled morphological diagnosis, long considered the …

Recognition Of Two New Species Of Freshwater Crabs From The Seychelles Based On Molecular Evidence (Potamoidea: Potamonautidae)., Neil Cumberlidge, Savel Regan Daniels Phd

Journal Articles

The Afrotropical freshwater crab genus Seychellum is endemic to the granitic Seychelles in the Indian Ocean (Mahé, Silhouette, Praslin, La Digue and Frégate). Here we describe two new cryptic species of Seychellum that represent two evolutionarily separate lineages of a previously monotypic genus. This raises to three the number of species of freshwater crabs known from Seychelles. Each species is endemic to either one island (Silhouette) or to a pair of islands (Mahé and Frégate, or Praslin and La Digue). The three species can be clearly distinguished as separate lineages by DNA analysis, haplotyping and examination of gonopod characters. The …

Global Patterns Of Freshwater Species Diversity, Threat And Cross-Taxon Congruence, Ben Collen Phd, Felix Whitton Phd, Ellie E. Dyer, Jonathan E.M. Baillie Phd, Neil Cumberlidge, William Darwall, Caroline Pollack, Nadia Richman Phd, Anne-Marie Soulsby, Monica Bohm Phd

Journal Articles

Aim Global-scale studies are required to identify broad-scale patterns in the distributions of species, to evaluate the processes that determine diversity and to determine how similar or different these patterns and processes are among different groups of freshwater species. Broad-scale patterns of spatial variation in species distribution are central to many fundamental questions in macroecology and conservation biology. We aimed to evaluate how congruent three commonly used metrics of diversity were among taxa for six groups of freshwater species.

Location Global.

Methods We compiled geographical range data on 7083 freshwater species of mammals, amphibians, reptiles, fishes, crabs and crayfish to …

Federal V. State Effectiveness: An Analysis Of The Endangered Species Act And Current Potential Attempts At Reform, Nicholas Primo

Pepperdine Policy Review

In November 2013, several Congressional leaders drafted a new bill to reform the Endangered Species Act of 1973 (ESA). While the Endangered Species Management Self-Determination Act (ESMSDA) was the first major attempt at updating the crucial U.S. environmental policy in decades, it also inflamed environmentalist defenders of the original bill. More importantly, it raised several questions as to whether state or federal-oriented approaches to endangered species protection and environmental policy more broadly is ultimately more effective. This article analyzes the original 1973 ESA, followed by an analysis of the ESMSDA currently being considered. It will discuss the various strengths and …

Agalychnis Dacnicolor—Predation., Víctor H. Jiménez-Arcos, Eric Centenero-Alcala, Leopoldo D. Vázquez Reyes, Christopher Blair, Samuel A. Santa Cruz-Padilla

Publications and Research

No abstract provided.

Extinction Risk And Conservation Of The World's Sharks And Rays, Nicholas K. Dulvy, Sarah L. Fowler, John A. Musick, Rachel D. Cavanagh, Peter M. Kyne, Lucy R. Harrison, John K. Carlson, Lindsay N. K. Davidson, Sonja V. Fordham, Malcolm P. Francis, Caroline M. Pollock, Colin A. Simpfendorfer, George H. Burgess, Kent E. Carpenter, Leonard J. V. Compagno, David A. Ebert, Claudine Gibson, Michelle R. Heupel, Suzanne R. Livingstone, Jonnell C. Sanciangco, John D. Stevens, Sarah Valenti, William T. White

Biological Sciences Faculty Publications

The rapid expansion of human activities threatens ocean-wide biodiversity. Numerous marine animal populations have declined, yet it remains unclear whether these trends are symptomatic of a chronic accumulation of global marine extinction risk. We present the first systematic analysis of threat for a globally distributed lineage of 1,041 chondrichthyan fishes-sharks, rays, and chimaeras. We estimate that one-quarter are threatened according to IUCN Red List criteria due to overfishing (targeted and incidental). Large-bodied, shallow-water species are at greatest risk and five out of the seven most threatened families are rays. Overall chondrichthyan extinction risk is substantially higher than for most other …

Developing Important Marine Mammal Area Criteria: Learning From Ecologically Or Biologically Significant Areas And Key Biodiversity Areas, Collenn M. Corrigan, Jeff A. Ardron, Mia T. Comeros-Raynal, Erich Hoyt, Giuseppe Notarbartolo Di Sciara, Kent E. Carpenter

Biological Sciences Faculty Publications

1. This paper explores how criteria to identify important marine mammal areas (IMMAs) could be developed, and nested in existing global criteria. This process would consider 134 species of marine mammals. 2. Particular attention is given to two suites of global criteria to identify areas important for the persistence of marine biodiversity: Ecologically or Biologically Significant Areas (EBSAs) developed through the Convention on Biological Diversity (CBD), and Key Biodiversity Areas (KBAs) in revision through the International Union for the Conservation of Nature (IUCN). They are seen as mutually complementary in the development of IMMAs. 3. The specificities necessary for identifying …

Oceanography, Geology, Biogeography, And Fisheries Of The Eastern Central Atlantic, Merete Tandstad, Ana Maria Caramelo, Fabio Carocci, Kent Carpenter, Jonnell C. Sanciangco

Biological Sciences Faculty Publications

[Introduction] This species identification guide focuses on the marine species occurring in the eastern Atlantic Ocean from Gibraltar in the north (36°00'N) to the middle of Namibia in the south (23°00'S) and westward to 30°00'W longitude (FAO Fishing Area 34) and to 20°00'W longitude (FAO Fishing Area 47) (Fig 1). Estuarine species, as well as species that only spend part of their life cycle in marine waters (anadromous and catadromous species) are also included.

The West African coast encompasses some of the most productive areas in the world, supporting important fishery resources and a unique diversity. Fisheries constitute an important …

Water As A Trophic Currency In Dryland Food Webs, Daniel C. Allen, Kevin E. Mccluney, Stephen R. Elser, John L. Sabo

Biological Sciences Faculty Publications

Water is essential for life on Earth, yet little is known about how water acts as a trophic currency, a unit of value in determining species interactions in terrestrial food webs. We tested the relative importance of groundwater and surface water in riparian food webs by manipulating their availability in dryland floodplains. Primary consumers (crickets) increased in abundance in response to added surface water and groundwater (contained in moist leaves), and predators (spiders and lizards) increased in abundance in response to added surface water, in spite of the presence of a river, an abundant water source. Moreover, the relative magnitude …

Statistical And Comparative Phylogeography Of Mexican Freshwater Taxa In Extreme Aquatic Environments, Lyndon M. Coghill

LSU New Orleans Theses and Dissertations

Phylogeography aims to understand the processes that underlie the distribution of genetic variation within and among closely related species. Although the means by which this goal might be achieved differ considerably from those that spawned the field some thirty years ago, the foundation and conceptual breakthroughs made by Avise are nonetheless the same and are as relevant today as they were two decades ago. Namely, patterns of neutral genetic variation among individuals carry the signature of a species’ demographic past, and the spatial and temporal environmental heterogeneity across a species’ geographic range can influence patterns of evolutionary change. Aquatic systems …

The Effects Of Salinity, Ph, Temperature, And Dissolved Oxygen On Sensitivity Of Pcr Identification Of T4 Bacteriophage, Joesph F. Cannon, Nicholas A. Thurn, Paul E. Richardson

Journal of the South Carolina Academy of Science

Bacteriophages are used as indicators of pathogenic bacteria in drinking, and wastewaters. They also show potential in limiting aquatic bacterial populations through their lytic properties. The effect of different water characteristics (salinity, pH, dissolved oxygen, and temperature) on the sensitivity of the PCR identification of virus particles were analyzed to determine at what levels bacteriophage can be detected in environmental samples. Results from this preliminary study indicate that a PCR bacteriophage detection technique has potential as a relatively efficient and economical indicator of coliform contamination in multiple aquatic environments. While further evaluation is needed, the protocol appears to function in …

Diversity Of Cultivable Bacteria Involved In The Formation Of Macroscopic Microbial Colonies (Cave Silver) On The Walls Of A Cave In Slovenia, Blagajana Herzog Velikonja, Rok Tkavc, Lejla Pašić

International Journal of Speleology

Karstic caves often support white, yellow, grey or pink microbial colonies that are termed ‘cave silver’ by speleologists. Using various sample pre-treatments and culture media, a wide variety of bacteria associated with these colonies were recovered from a cave in Slovenia, Pajsarjeva jama. Decreasing the inoculum size resulted in significant increases in viable counts, while pre-treatments had the opposite effect with the exception of microwave irradiation. While all growth media yielded viable counts, the maximal counts were observed on a low-nutrient TWA medium.

Based on the 16S rRNA gene sequence of OTU representatives, the majority of the 80 isolates examined …