Biodiversity Commons^™

Effects Of Prescribed Fire On Upland Plant Biodiversity And Abundance In Northeast Florida, Peter D. Maholland

UNF Graduate Theses and Dissertations

Terrestrial ecosystems in the southeastern United States have evolved with fire as a common disturbance and as a result many natural communities require the presence of fire to persist over time. Human development precludes natural fires from occurring within these communities; however, prescribed fire is considered to be a critical tool in the effort to restore fire-dependent ecosystems after decades of fire exclusion. Direct effects of fire on individual floral and faunal species as well as benefits to biodiversity at the landscape (gamma diversity) level have largely been supported in previous research. However, information on the effects of natural and …

Shortfalls And Solutions For Meeting National And Global Conservation Area Targets, Stuart H. M. Butchart, Martin Clarke, Robert J. Smith, Rachel E. Sykes, Jorn P. W. Scharlemann, Mike Harfoot, Graeme M. Buchanan, Ariadne Angulo, Andrew Balmford, Bastian Bertzky, Thomas M. Brooks, Kent E. Carpenter, 28 Others

Biological Sciences Faculty Publications

Governments have committed to conserving greater than or equal to 17% of terrestrial and greater than or equal to 10% of marine environments globally, especially "areas of particular importance for biodiversity" through "ecologically representative" Protected Area (PA) systems or other "area-based conservation measures", while individual countries have committed to conserve 3-50% of their land area. We estimate that PAs currently cover 14.6% of terrestrial and 2.8% of marine extent, but 59-68% of ecoregions, 77-78% of important sites for biodiversity, and 57% of 25,380 species have inadequate coverage. The existing 19.7 million km super(2) terrestrial PA network needs only 3.3 million …

Multiple Drivers Of Decline In The Global Status Of Freshwater Crayfish (Decapoda: Astacidea), Nadia I. Richman, Monika Bohm, Susan Adams, Fernando Alvarez, Elizabeth A. Bergey, John J.S. Bunn, Quinton Burnham, Jay Cordeiro, Jason Coughran, Keith A. Crandall, Kathryn L. Dawkins, Robert J. Distefano, Niall E. Doran, Lennart Edsman, Arnold G. Eversole, Leopold Fureder, James M. Furse, Francessa Gherardi, Premek Hamr, David M. Holdich, Pierre Horwitz, Kerrylyn Johnston, Clive M. Jones, Julia P.G. Jones, Robert L. Jones, Thomas G. Jones, Tadashi Kawai, Susan Lawler, Marilu Lopez-Mejia, Rebecca M. Miller, Carlos Pedraza-Lara, Julian D. Reynolds, Alastair M.M. Richardson, Mark B. Schiltz, Guenter A. Schuster, Peter J. Sibley, Catherine Souty-Grosset, Christopher A. Taylor, Roger F. Thoma, Jerry Walls, Todd S. Walsh, Ben Collen

Research outputs 2014 to 2021

Rates of biodiversity loss are higher in freshwater ecosystems than in most terrestrial or marine ecosystems, making freshwater conservation a priority. However, prioritization methods are impeded by insufficient knowledge on the distribution and conservation status of freshwater taxa, particularly invertebrates. We evaluated the extinction risk of the world's 590 freshwater crayfish species using the IUCN Categories and Criteria and found 32% of all species are threatened with extinction. The level of extinction risk differed between families, with proportionally more threatened species in the Parastacidae and Astacidae than in the Cambaridae. Four described species were Extinct and 21% were assessed as …

Carnivore Diet Identification Through Scat And Genetic Analysis In Namibia, Africa, Alicia J. Walsh

Honors Theses and Capstones

Worldwide the cheetah population is declining making them Africa’s most endangered large cat. Namibia, Africa currently has the largest population of cheetahs in the world. During the summer of 2014, I did scat analysis of carnivores on the property of the Cheetah Conservation Fund (CCF) in Namibia in order to better understand the predators that compete with the cheetah and how the ecosystem works as a whole. I worked at CCF for nine weeks to analyze the diets of carnivores in the area through genetic and scat analysis. Analyzing carnivore feces would ultimately identify the diet of various carnivores in …

Population Differentiation And Habitat Selection Of A Montane Red Fox Population In The Greater Yellowstone Ecosystem, Patrick Cross

Graduate Student Theses, Dissertations, & Professional Papers

Montane red fox (Vulpes vulpes) populations across the western United States are genetically and morphologically distinct from foxes at lower elevations. These montane populations also share a preference for subalpine forest habitats. One hypothesis is that they stem from boreal forest-associated ancestors that expanded during the Pleistocene when boreal forests extended farther south than they do today. Forest habitat selection may therefore aid the persistence of native populations surrounded by non-native conspecifics. Alternatively, this behavior may be an avoidance mechanism in response to competition with larger coyotes (Canis latrans), or a product of the fox's natural adaptability. The red fox …

Examining The Impacts Of Valley Fills In Stream Ecosystems On Amphibian And Aquatic Insect Communities In Southeastern Kentucky, John Clayton Bourne

Online Theses and Dissertations

Chapter 1. Abstract: Biodiversity is not evenly distributed, and understanding factors that determine spatial patterns of species diversity remains a key question in ecology. Because of their relatively high abundance and complex life cycles, stream salamanders and aquatic insects are important trophic links and serve a critical role in transferring energy. Despite this importance little research has examined their community structure simultaneously in aquatic ecosystems. The primary objective of this research was to determine the structure of these communities across natural areas of southeastern Kentucky and understand what factors impact their abundances and distributions. To address this, we sampled eight …

Density And Diversity Of Bees In The Midwestern Agricultural Landscape: Influence Of Surrounding Agricultural Land Use And Biofuel Candidate Crops, Andrew J. Ridgway, Ai Wen, Kenneth Elgersma

Undergraduate Student Work

Recent trends in land management practices have led to dramatic population decline in bees and other insect pollinators (Cameron et al. 2011). Concerns about “Colony Collapse Disorder” in domestic honeybees, for example, have received widespread high-profile attention in the scientific community. While concerns have centered mainly on the domestic honeybee, native bees also provide indispensable, cost-free pollination services to crops production. Despite the value of native bee species, little is known about them in the Midwest region, and recent studies suggest their populations may be in decline specifically due to a lack of native vegetation in this highly agricultural landscape. …

Systematics Of The African River Frog Genus Amietia (Anura: Pyxicephalidae) From Eastern Democratic Republic Of The Congo, Thornton Robert Larson

Open Access Theses & Dissertations

The African river frog genus Amietia is found near rivers and other lentic water sources throughout central, eastern and southern Africa. Because the genus includes multiple morphologically conservative species, taxonomic studies of river frogs have been limited. We sampled 49 individuals of Amietia from multiple localities in and near the Albertine Rift (AR) of Burundi, Democratic Republic of the Congo and Uganda. We utilized single-gene (16S) and concatenated (12S, 16S, cytochrome b and RAG1) gene-tree analyses and coalescent species-tree analyses to construct phylogenetic trees. Two divergence dating approaches were used in BEAST, including secondary calibration points with 12S, 16S and …

Phylogeny And Systematics Of Panaspis And Afroablepharus Skinks (Squamata: Scincidae) In The Savannas Of Sub-Saharan Africa, Maria Fernanda Medina

Open Access Theses & Dissertations

African snake-eyed skinks are relatively small lizards of the genera Panaspis and Afroablepharus. The allocation of these genera was frequently rearranged in the 20th century based on morphology, ecology and biogeography. Members of these genera occur primarily in savanna habitats throughout sub-Saharan Africa and include species that have highly conserved morphology, which poses a challenge for taxonomic studies. We sequenced two mitochondrial (16S and cyt b) and two nuclear genes (PDC and RAG1) from 91 Panaspis and Afroablepharus samples from various localities in eastern, central and southern Africa. Concatenated gene-tree and divergence dating analyses were conducted to infer phylogenies and …

The Status Of Fishes In The Missouri River, Nebraska: Sauger (Sander Canadensis), Kirk D. Steffensen, Sam Stukel, Dane A. Shuman

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Early fisheries investigation of the Missouri River fish community indicated that Sauger were common throughout Nebraska, including all major Missouri River tributaries. However due to many factors, their current range is restricted to the Missouri River and the lower reaches of a few tributaries. Hesse (1994) recommended listing Sauger as a state endangered species but this recommendation was never implemented. Therefore, the objective of this paper is to reevaluate the current population status of Sauger in the Missouri River along Nebraska’s border. Over 2,100 Sauger have been captured from the Missouri River along Nebraska’s eastern border since 2003. Sauger were …

The Status Of Fishes In The Missouri River, Nebraska: Shoal Chub (Macrhybopsis Hyostoma), Sturgeon Chub (M. Gelida), Sicklefin Chub (M. Meeki), Silver Chub (M. Storeriana), Flathead Chub (Platygobio Gracilis), Plains Minnow (Hybognathus Placitus), Western Silvery Minnow (H. Argyritis), And Brassy Minnow (H. Hankinsoni), Kirk D. Steffensen, Dane A. Shuman, Sam Stukel

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Throughout the past century, the Missouri River has been highly modified which has negatively affected the native fish community. Previous research quantified the reduction of several native Cyprinidae species and made several recommendations to aid in recovery. However, these recommendations were not implemented. Therefore, the objective of this paper is to assess the current population trends of eight native cyprinid species and develop the current management objectives. Over 335,000 fish were collected from the Missouri River along Nebraska’s eastern border with mini-fyke nets and otter trawls from 2003 to 2012. Target Cyprinidae species consisted of less than five percent (n …

Differences In The Diversity Of Frogspecies Between Sierra Lloronaand El Valle, Panama, Kei Okabe Thurber

Independent Study Project (ISP) Collection

Panama is home to the greatest diversity of species in all of Central America. It is home to 174 species of frogs, 35 of which are endemic to Panama. Frogs are a vital part of many ecosystems. They maintain insect populations and act as food sources for larger predators. Their job of maintaining insect populations is essential to curbing the spread of diseases. Additionally, scientists have found chemical compounds in the skin of frogs that can be used to treat pain and prevent infections. The main threat to the majority of frogs is the deadly fungus Batrachochytrium dendrobatidis (Bd), or …

Avian Diversity Across Three Distinct Agricultural Landscapes In Guadalupe, Chiriquí Highlands, Panama, Jarred Jones

Independent Study Project (ISP) Collection

Deforestation of tropical forest for agricultural purposes threatens habitat loss of native species. The value of various agricultural landscapes in conserving avian populations is useful in determining diversity-conscious development plans. However, generalized results from regionalscale studies cannot be implemented to insular avian habitats. This study serves as the only current avian diversity study of the Chiriquí Highlands. To determine the effect of agricultural land use within an insular avian habitat, I compared avian diversity and site population similarity in Guadalupe, Chiriquí Highlands of the Talamanca Range, Panama. I hypothesized that avian diversity is greatest at forest edge followed by forest …

Comparing Disease Prevalence In Hard Corals At Four Different Reefs Near The Island Of Narganá In The Guna Yala Comarca Of Panamá, Connor Hinton

Independent Study Project (ISP) Collection

Coral reefs harbor much of the world’s known marine biodiversity. For a number of reasons, coral reefs are becoming increasingly threatened. Large portions of the world’s reefs have already been lost, and the number of degrading reefs is constantly on the rise. One cause for the destruction of coral reefs are coral diseases, ultimately causing coral mortality. With the death of corals, a key species is lost, endangering the entire reef ecosystem. Documenting the presence of such diseases could be useful in assessing current reef health and ameliorating the growing threat of coral diseases. In this project, 18 40m2 belt …

The Unseen World: Environmental Microbial Sequencing And Identification Methods For Ecologists, Naupaka Zimmerman, Jacques Izard, Christian Klatt, Jizhong Zhou, Emma Aronson

Department of Food Science and Technology: Faculty Publications

Archaea, bacteria, microeukaryotes, and the viruses that infect them (collectively “microorganisms”) are foundational components of all ecosystems, inhabiting almost every imaginable environment and comprising the majority of the planet’s organismal and evolutionary diversity. Microorganisms play integral roles in ecosystem functioning; are important in the biogeochemical cycling of carbon (C), nitrogen (N), sulfur (S), phosphorus (P), and various metals (eg Barnard et al. 2005); and may be vital to ecosystem responses to large-scale climatic change. Rarely found alone, microorganisms often form complex communities that are dynamic in space and time. For these and other reasons, ecologists and environmental scientists have become …

Evaluating The Progress Of A Mangrove Reforestation Project On Isla Galeta, Colon, Abigail Hope Outterson

Independent Study Project (ISP) Collection

Just off the Atlantic coast of Panama, a dynamic and self-renewing ecosystem takes advantage of the tropical climate and swampy conditions. Guarding Punta Galeta’s shores since before it was a U.S. navy base in the 1930’s, mangroves that have persisted here for centuries now draw scientists and tourists alike from all over the world to the Smithsonian Tropical Research Center. Once viewed as unproductive, distasteful environments, mangroves are increasingly recognized worldwide as critical habitat for endangered and commercially significant species, as well as for their ecological and aesthetic value. Uniquely adapted to survive in saline environments, mangroves combine methods of …

Earthworm, Microbial Biomass, And Leaf Litter Decay Responses After Invasive Honeysuckle Shrub Removal From Urban Woodlands., Robert Preston Pipal

Electronic Theses and Dissertations

Invasive species are one of the leading causes of biodiversity loss and their presence can significantly impact the structure and function of native ecosystems. In this dissertation, the impacts of the invasive honeysuckle shrub, Lonicera maackii, on exotic earthworm populations, leaf litter decay responses, and inorganic and organic nutrient pools in an urban woodland park are assessed. Chapter 1 provides a brief review of honeysuckle's effects on forest ecosystems. Chapter 2 describes honeysuckle’s effects on exotic earthworm populations and the seasonal importance of macroinvertebrates to leaf litter decomposition in urban woodlands. This study revealed that L. maackii promoted higher exotic …

Traversing Swanton Road, 17th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Molecular Characterization Of Hemoglobin Protein In Larvae Of 4th Instar Chironomidae For Evaluating Environmental Quality, Jun Taek Oh

Seton Hall University Dissertations and Theses (ETDs)

Studying environmental quality is a challenging task. It is a complicated exercise since the environment is constantly influenced by numerous variables such as climate change, anthropogenic activities, and unexpected natural disasters. Traditionally, exposure to chemical pollutants depended on chemical and physical analysis of environmental media. Unfortunately, this approach has not taken into consideration bioavailability of the chemical(s) of interest to exposed organisms and/or modification of the chemical (bioactivation/detoxification) by the organism. Benthic macroinvertebrates (BMIs) have been chosen as bioindicators for numerous environmental biomonitoring programs geared towards the assessment of aquatic ecosystems. Biomonitoring requires a more subtle measure – a biomarker …

The Cedar Point Experience, 40 Years Of Field Based, Experiential Learning, Jon Garbisch

Discipline-Based Education Research Group Speaker Series

The Cedar Point Experience was born in the summer of 1975. At the urging of several biology faculty UNL leased the Goodall Cedar Point Girlscout Camp and offered a broad range of field based courses exploiting the local environment as their classroom. These instructors also had a strong interest in the area as a base for their own research. Today the UNL Cedar Point Biological Station with a few additional buildings can support around 100 people with full service dining, housing, classroom and lab space.

The instructional model has remained unchanged for the past 40 years. Field based or place …

The Breeding Biology Of Pheasant Tailed Jacana, Hydrophasianus Chirurgus In Wetlands Of Pakistan, Zahid Iqbal Khan, Mohammad Shareef Mughal

Journal of Bioresource Management

Pheasant Tailed Jacana, Hydrophasianus chirurgus is an attractive bird sustaining its presence in wetlands of Pakistan during summers. To facilitate conservation, the breeding biology of specific birds was recorded during 2004-07. According to the observations, the clutch size remains between 1-4 eggs, and most of the fertile females laid 2 consecutive clutches to hand over to two different males for hatching and chick rearing. Incubation calculated between 25-29 days hatchability was found to be around 80%. Defensive responses, egg laying, and chick care were observed to better understand the general behaviour of the species.

Biodiversity Assessment And Its Effect On The Environment Of Shakarparian Forest, Inayat Ullah Malik, Abul Hasan Faiz, Fakhar -I- Abbas

Journal of Bioresource Management

Shakarparian is known for its scenic beauty and wilderness and has a significant recreational value. It is a part of Margalla Hills National Park (MHNP), Islamabad and can be a good recourse to conduct various environmental studies. This study was aimed to explore the overall biodiversity of Shakarparian forest in terms of flora and its associated fauna. Phytosociological survey was carried out in order to identify the existing plant communities. The plant associations were then correlated to the existing fauna of the area. The results will provide the baseline data to support further studies on biodiversity analysis of ecologically rich …

A Checklist Of Birds Of Prey Of Rawalpindi, Islamabad And Adjacent Areas, Nadia Yousaf, Madeeha Manzoor

Journal of Bioresource Management

Wildlife is declining worldwide due to loss of habitat, pollution, introduction of exotic species, climatic changes etc. Birds of prey are believed to be rapidly declining in Pakistan though no reliable recent data is available and the available literature suggests its previous wide distribution throughout Pakistan. This current study was carried out in the Rawalpindi, Islamabad and some adjacent areas (latitude N 33^o27.34-33^o48.05 longitude E 72^o59.34-73^o27.30) to make a checklist of previously and newly existing prey birds as well as to study their general behaviors and biology. Targeted areas were studied at …

Review: Role Of Syrphids (Diptera: Syrphidae) As Biotic Agents And Pollinators In Pakistan, Mohammad Irshad

Journal of Bioresource Management

The agriculture sector is important in the overall economy of Pakistan. There are many limiting factors in crop production. The two important factors are pest damage and pollination in addition to many others. Pest damage remained a serious problem since the dawn of human civilization. With the advancement of knowledge regarding safety of environment, pests are now tackled through Integrated Pest Management (IPM) techniques. In IPM, biological control through use of natural enemies is quite significant and the favored approach. Pollination is an essential ecosystem service. Effective pollination results in increased crop production, quality improvement and more seed production. One …

Toxic Metal Effect On Filamentous Fungi Isolated From The Contaminated Soil Of Multan And Gujranwala, Anam Rasool, Shazia Irum

Journal of Bioresource Management

Considering the importance of filamentous fungi for bioremediation of wastewater and contaminated soils, this study was planned to investigate the metal tolerance potential of indigenous filamentous fungi. Certain metals are important to biological actions. However all metals, whether essential or inessential will show toxicity at certain levels. During 2012 total 17 fungi were isolated and preserved from contaminated peri-urban agricultural areas of Multan and Gujranwala for further detail investigation of heavy metal tolerance. Aspergillus niger, Aspergillus fumigatus and Aspergillus flavus isolated from both soil and water samples while Aspergillus terreus and Penicillium sp were only isolated from soil samples …

Restoration Of Bison (Bison Bison) To Agate Fossil Beds National Monument, A Feasibility Study, Daniel S. Licht

United States National Park Service: Publications

Executive Summary

Agate Fossil Beds National Monument is a 3,057-acre park located in western Nebraska. The unit is comprised of northern mixed-grass prairie vegetation, typical of the Northern Great Plains. Weather, fire, and grazing are generally considered to be the ecological drivers of prairie ecosystems and critical for prairie health. However, grazing has essentially been absent since the 1960s. In 2014, a Department of the Interior report explicitly listed the park as a high priority for bison restoration. This report evaluates the feasibility, management options, benefits, and challenges of restoring bison to Agate Fossil Beds National Monument.

A potential bison …

Documentation Of The Black-Footed Ferret, Mustela Nigripes On The Standing Rock Indian Reservation, Mobridge, South Dakota, Michael P. Gutzmer, Jeffrey C. Kelly

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Since 1991, 19 specific black-footed ferret reintroduction projects have been conducted across 8 States, Canada, and Mexico. All five of the first ferret reintroductions (from 1991 to 1996) continue to be occupied by ferrets. The photographs of October 31 and November 1 are the first unequivocal documentation of black-footed ferrets on the Standing Rock Indian Reservation. Ferrets observed on Standing Rock may be dispersals from the nearby Cheyenne River Sioux Indian Reservation to the south. The nearest re-introduction site for ferrets is approximately 20 miles away, in Whitehorse, South Dakota, and the observation of ferrets on Standing Rock could document …

Revisiting The Vanishing Refuge Model Of Diversification, Robert Damasceno, Maria L. Strangas, Ana C. Carnaval, Miguel T. Rodrigues, Craig Moritz

Publications and Research

Much of the debate around speciation and historical biogeography has focused on the role of stabilizing selection on the physiological (abiotic) niche, emphasizing how isolation and vicariance, when associated with niche conservatism, may drive tropical speciation. Yet, recent re-emphasis on the ecological dimensions of speciation points to a more prominent role of divergent selection in driving genetic, phenotypic, and niche divergence. The vanishing refuge model (VRM), first described by Vanzolini and Williams (1981), describes a process of diversification through climate-driven habitat fragmentation and exposure to new environments, integrating both vicariance and divergent selection. This model suggests that dynamic climates and …

The Status Of Fishes In The Missouri River, Nebraska: Lake Sturgeon (Acipenser Fulvescens), Kirk D. Steffensen, Sam Stukel, Dane A. Shuman

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Lake Sturgeon (Acipenser fulvescens) occurrences in the Missouri River along Nebraska’s eastern border are historically sporadic and rare. Presently, the wild Lake Sturgeon population in this river reach may be extirpated. A Recovery Program initiated by the Missouri Department of Conservation (MDC) has stocked almost 150,000 hatchery-reared Lake Sturgeon into the lower Missouri River at several sites in Missouri. As a result, the number of Lake Sturgeon collected has increased. Since monitoring began in 2003, no Lake Sturgeon have been collected above Gavins Point Dam while 40 fish were collected downstream of Gavins Point Dam. The majority of …

Sensitivity And Tolerance Of Riparian Arthropod Communities To Altered Water Resources Along A Drying River, Kevin E. Mccluney, John L. Sabo

Biological Sciences Faculty Publications

Rivers around the world are drying with increasing frequency, but little is known about effects on terrestrial animal communities. Previous research along the San Pedro River in southeastern AZ, USA, suggests that changes in the availability of water resources associated with river drying lead to changes in predator abundance, community composition, diversity, and abundance of particular taxa of arthropods, but these observations have not yet been tested manipulatively.