Biodiversity Commons^™

Nsf Grant Helps Preserve Parasite Collections [Press Release], Scott Gardner, Leslie Reed

Scott L. Gardner Publications

The National Science Foundation has awarded a $500,000 grant that will allow four major parasite collections to be digitized. The collections are part of UNL's Harold W. Manter Laboratory of Parasitology. Scott Gardner (pictured) is the curator and director of the Manter Laboratory.

A $500,000 grant from the National Science Foundation will allow the Harold W. Manter Laboratory of Parasitology to digitally preserve four major collections of parasite specimens donated to the University of Nebraska-Lincoln during the past five years.

Comparing Pseudo-Environmental And Horizontal Plus Pseudo-Environmental Transmission Of A Probiotic Janithinobacterium Lividum Between Green Frog Tadpoles, Stephen Simonetti

Senior Honors Projects, 2010-2019

The gram-negative bacteria, Janthinobacterium lividum (J.liv) is able to kill the pathogenic fungus known as Batrachochytrium dendrobatidis (Bd), which is known to be causing massive amphibian decline worldwide. The purpose of this research was to identify the ability of the probiotic bacteria, Janthinobacterium lividum (J.liv), to be horizontally transmitted from individual to individual and/or pseudo-environmentally transmitted from individual to environment and back to individual between Lithobates clamitans (green frog) tadpoles. Based on previous findings I hypothesized that pseudo-environmental and horizontal transmission will occur in tadpoles. This would be important for helping stop the decline of amphibians because it would provide …

Using Capture-Mark-Recapture Techniques To Estimate Detection Probabilities & Fidelity Of Expression For The Critically Endangered James Spinymussel (Pleurobema Collina)., Alaina C. Esposito

Masters Theses, 2010-2019

The critically endangered James Spinymussel (Pleurobema collina) is a species of freshwater mussel endemic to Virginia’s James and Dan River basins. In the last 20 years, P. collina has experienced a substantial decline in numbers and currently occupies approximately 10% of its original habitat; however, little information is known about this species to assist in conservation. A 230-meter reach of transitional habitat in Swift Run was selected for repeat observations to estimate detection probabilities using a Capture-Mark-Recapture framework. In June 2014, visual scouting began to locate and tag P. collina (including other mussels in the community) with PIT …

Section Abstracts: Natural History And Biodiversity

Virginia Journal of Science

Abstracts of the Natural History and Biodiversity Section for the 93rd Annual Meeting of the Virginia Academy of Science, May 21-23, 2015, James Madison University, Richmond, Virginia

Global Information Systems Analysis Of Changes In Temporal Flowers Distribution, By Species, Across The Biology Trail System Of Southern Adventist University In Collegedale, Tennessee, Lien T. Turley

Research in Biology

The White Oak Mountain Biology Trails, located in Collegedale, Tennessee, is a recreational site for hiking and mountain biking. The impact of trail usage on native wildflower species is not known. The goal of this research is to begin a longitudinal study of the impact of trail usage on the diversity and abundance of wildflower. The wildflowers diversity were determined by students walking the Biology Trails System and reporting the different species of flowers that they see. Ten permanent quadrants were established to document the wildflowers abundance. Flowers in each of ten permanent quadrants were identified and counted. Additional data …

Innovative Governance And Natural Resource Management In Kenya: Procedural And Substantive Outcomes Of Civil Society Participation, Jane Omudho Okwako

Dissertations

Kenya’s environmental sector is embracing co-management to address major threats to wildlife. In the past two decades, the Municipal-Community-Private Sector Partnership (MCPP) model evolved to address the threats. This dissertation seeks to explain variations in partnership outcomes. It evaluates whether the model as introduced empowers communities to be conservation stewards.

This study hypothesized the impact of five variables. These are decentralization of power, elite support, capacity of community organizations, partnership formalization, and resources expended. The findings confirm that three variables are indispensable and two minimally influence empowerment. More decentralized management structures are enabling and supportive of empowerment. However, empowerment is …

A Systematic Review Of The Soricimorph Eulipotyphla (Soricidae: Mammalia) From The Gray Fossil Site (Hemphillian), Tennessee, Joshua Doby

Electronic Theses and Dissertations

Due in part to the incompleteness of the Cenozoic fossil record in the eastern U.S., the evolution and immigration of shrews (Soricidae) is not well understood. A rich soricid fauna from the Gray Fossil Site (GFS), Washington County, TN, has enabled many new inferences to be made. There are 7 new species in 6 genera: Paenelimnoecus, “Blarinella”, Petenyia, Tregosorex, Crusafontina, and Gen et sp. nov. GFS species of the genera Paenelimnoecus, “Blarinella”, and Petenyia are the first occurrence of each genus in the New World. Tregosorex, Crusafontina, and the N.A. taxon Limnoecus all have their latest documented occurrence at the …

Reproductive Performance Of Kittlitz's Murrelet In A Glaciated Landscape, Icy Bay, Alaska, Usa, Michelle L. Kissling, Scott M. Gende, Stephen B. Lewis, Paul Lukacs

Wildlife Biology Faculty Publications

Kittlitz's Murrelet (Brachyramphus brevirostris) is a dispersed-nesting seabird endemic to Alaska and eastern Russia that may have experienced considerable population declines in some parts of its range in the past few decades. Poor reproduction has been suggested as the demographic bottleneck, yet there are no direct estimates of reproduction in a glaciated area where this species reaches its highest densities at sea during the breeding season. The lack of demographic information in glacial habitats has limited our ability to interpret population trends and to clarify whether the presence of glaciers affects reproductive performance. Between 2007 and 2012, we …

Two New Euscorpius Species From Central-Western Greece (Scorpiones: Euscorpiidae), Gioele Tropea, Victor Fet

Euscorpius

Two new Euscorpius species are described, based on specimens collected by P.M. Giachino & D. Vailati in central-western Greece in neighboring Aitoloakarnania (Western Greece) and Fokida (Central Greece) regional units. No Euscorpius specimens were previously available from this area. The first new species, Euscorpius giachinoi sp. n., is very similar to a recently described E. birulai Fet et al., 2014 from Euboea Island, and is also characterized by a low trichobothrial count (Pv = 7, et = 5), a low pectinal teeth count (Dp = 7 in males, 6 in females), and long-limbed features. The second species, …

Relative Abundances Of The Recently Introduced Barnacles, Megabalanus Coccopoma And An Unidentified Species Of Megabalanus, In The Southeastern U.S., Jennifer L. Tyson

Honors College Theses

ABSTRACT

Megabalanus coccopoma is a prominent invasive species off the coast of Georgia. Recently, among collected samples thought to be M. coccopoma, several individuals of an unidentified species of barnacle were found. The species has been identified as a Megabalanus species, but is still unidentified to the species level. Species identification is difficult due to morphological variation, inconsistent taxonomic keys, and unknown origin. In this study I developed a method to accurately distinguish M. coccopoma from the unidentified Megabalanus sp. using sequence differences in the mitochondrial Cytochrome Oxidase I (COI) gene. This study will provide an accurate estimate of …

Traversing Swanton Road, 19th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Taking Root: An Analysis Of The Best Method For Active Forest Regeneration In The Cloud Forest, Charlotte Startin

Independent Study Project (ISP) Collection

The cloud forest is a biodiversity hotspot and provides many vital ecological and economic services. Unfortunately, deforestation for pastures in the lower montane cloud forest is high. Many pastures become abandoned, leaving highly disturbed open areas of land where natural forest regeneration is poor. Human intervention to encourage ecological restoration is very important to re-establish the proper structure and functioning of the ecosystem. Forest regeneration projects are rare and often unsuccessful, which is why increased knowledge and skills of successful and practical methods for assisted regeneration are needed. The Inti Llacta Reserve in the Pichincha province in Ecuador protects a …

Fauna Census Of Intertidal Cliffs, Mangapwani, Zanzibar, Emily Jankowski

Independent Study Project (ISP) Collection

Due to their extreme variations in condition over the course of a day, intertidal zones are challenging environments. Organisms that live there must be prepared to cope with both exposure and submersion, not to mention the temperature variations that accompany these conditions. The differing tolerances and adaptations of various organisms to these conditions generally cause patterns of vertical zonation to occur in the intertidal zone, especially when the shore is steep and rocky. Understanding the ecology of shore environments is important to future conservation and management efforts. This study was conducted on a beach in Mangapwani, Zanzibar at at 6˚ …

Wpa News 96 (2015), World Pheasant Association

Galliformes Specialist Group and Affiliated Societies: Newsletters

WPA News (Spring 2015), number 96

Published by the World Pheasant Association

Monarch Butterfly, Sam Baker

Sustainability

No abstract provided.

Internship In The Entomological Collections In The Smithsonian Institution (Si), National Museum Of Natural History (Nmnh): A Species-Level Inventory Of The Superfamily Gelechioidea (Insecta: Lepidoptera)., Sherry V. Spriggs

Department of Entomology: Distance Master of Science Projects

The internship was completed in the Department of Entomology at the Smithsonian Institution’s National Museum of Natural History located in Washington, DC. The internship started November 2014 and ended April 2015 and consisted of working in the collection room one day per week, usually on Tuesdays. One of the goals of the Department of Entomology, National Museum of Natural History, Smithsonian Institution is to compile a comprehensive inventory all of the species in its collections. As a component of this over-arching goal, the primary project of the internship was to compile a species-level inventory of the superfamily Gelechioidea (Insecta: Lepidoptera).

A Comparison Of The Genetic Diversity Of The Class Ii Major Histocompatibility Complex In Ex Situ And In Situ Populations Of African Penguins (Spheniscus Demersus), Emily Willmer

Undergraduate Honors Thesis Projects

As an endangered species, the African penguin (Spheniscus demersus) is at risk of becoming extinct in the wild due to destruction of their coastal habitat and reduction in food availability. The development of a genetically diverse and healthy captive population is important in helping to conserve the species. The goal of this project was to determine the genetic diversity of the class II major histocompatibility complex (MHC) of a wild population of African penguins and compare it to the diversity of the captive population at Mystic Aquarium in Mystic, Connecticut that has previously been studied. We found that …

Historical And Contemporary Demography Of Leaf-Toed Geckos (Phyllodactylidae: Phyllodactylus) In The Mexican Dry Forest, Christopher Blair, Victor H. Jiménez Arcos, Fausto R. Méndez De La Cruz, Robert W. Murphy

Publications and Research

Disentangling the relative influence of historical versus contemporary processes shaping the spatial distribution of genetic variation is critical if we are to effectively mitigate key biodiversity issues. We utilize a comprehensive approach based on different molecular marker types and analytical methods to understand the demographic consequences of recent habitat fragmentation in a spatially explicit context. We focus our efforts on native leaf-toed geckos (Phyllodactylus tuberculosus saxatilis) throughout fragmented habitat in the tropical dry forest of northern Mexico as recent evidence suggests that geographic ranges for these geckos may be much smaller than currently realized. However, no data are …

Ecological Studies Of Wolves On Isle Royale, 2014-2015, John A. Vucetich, Rolf O. Peterson

Ecological Studies of Wolves on Isle Royale

Annual Report 2014-2015

Traversing Swanton Road, 18th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Subsistence Strategies In Traditional Societies Distinguish Gut Microbiomes, Alexandra J. Obregon-Tito, Raul Y. Tito, Jessica Metcalf, Krithivasan Sankaranarayanan, Jose C. Clemente, Luke K. Ursell, Zhenjiang Zech Xu, Will Van Treuren, Rob Knight, Patrick M. Gaffney, Paul Spicer, Paul Lawson, Luis Marin-Reyes, Omar Trujillo-Villarroel, Morris Foster, Emilio Guija-Poma, Luzmila Troncoso-Corzo, Christina Warinner, Andrew T. Ozga, Cecil M. Lewis Jr.

Biology Faculty Articles

Recent studies suggest that gut microbiomes of urban-industrialized societies are different from those of traditional peoples. Here we examine the relationship between lifeways and gut microbiota through taxonomic and functional potential characterization of faecal samples from hunter-gatherer and traditional agriculturalist communities in Peru and an urban-industrialized community from the US. We find that in addition to taxonomic and metabolic differences between urban and traditional lifestyles, hunter-gatherers form a distinct sub-group among traditional peoples. As observed in previous studies, we find that Treponema are characteristic of traditional gut microbiomes. Moreover, through genome reconstruction (2.2–2.5 MB, coverage depth × 26–513) and functional …

Identification Of Aflatoxins And Ochratoxin A In Selected Imported Pet Food, Iffat Tahira, Nighat Sultana, Nafeesa Qudsia Hanif

Journal of Bioresource Management

The current study was conducted to analyze the aflatoxins (AF i.e. AFB1, AFB2, AFG1 AFG2) and ochratoxin A (OTA) in imported pet food. A total of five hundred and ten commercially available imported pet food samples of cat (solid = 240, semi-solid = 90) and dog (solid = 150, semi-solid = 30) were collected from retailers and analyzed by chromatographic technique i.e. HPTLC. Results revealed 45.83% (mean, 3.90 ppb) and 18% (mean, 4.83 ppb) of AFB1 incidence in solid pet foods of cats and dogs, respectively. However, lower levels i.e. 8.88% (mean, 4.60ppb) and 6.66% (mean, 2.80ppb) of AFB1 were …

The Population Estimate Of Pheasant Tailed Jacana, Hydrophasianus Chirurgus In Wetlands Of Pakistan, Zahid Iqbal Khan, Mohammad Shareef Mughal

Journal of Bioresource Management

Pheasant Tailed Jacana, Hydrophasianus chirurgus, is the only beautiful bird maintaining its presence in the abandoned wetlands of Punjab during the summer season. The population distribution appears, between 298 and 347, which was highest (83-96) at Marala and lowest (21-57) at Balloki, with density found to be highest (3/km2) and lowest (0.3/ km2), respectively. Being a migratory bird, March was observed as the start of arrival, and October was observed as completion of departure from the study areas.

Determination Of Acute Toxicity Of Copper And Cobalt For Tilapia Nilotica, Asif Naseem Rai, Asmat Ullah, Jibran Haider

Journal of Bioresource Management

During the present investigation, the 96-hr LC50 and lethal concentrations of copper and cobalt for Tilapia nilotica were determined under controlled laboratory conditions at constant pH (7.25), total hardness (255 mgL-1) and temperature (30 °C). During acute toxicity studies, the physico-chemical parameters of water viz. temperature, pH, dissolved oxygen, electrical conductivity, carbon dioxide, total ammonia, calcium, sodium, magnesium, potassium and total hardness were monitored at 12-hr intervals for each test. Fish were exposed to different concentrations of copper and cobalt, separately, starting from zero with an increment of 0.05 and 0.5 mgL-1. After 96-hr exposure of various concentrations of each …

Evaluation Of Biochar As Fertilizer For The Growth Of Some Seasonal Vegetables, Kainaat William, Rizwana Aleem Qureshi

Journal of Bioresource Management

Biochar was used to replace inorganic fertilizers. Biochar was synthesized by the process of pyrolysis using horse dung (5kg) and dry grass (25kg) to check its effect on the growth of some local vegetables i.e. okra, beans, coriander and mint. These plants were kept in three different environments i.e. outdoor, indoor and greenhouse conditions. In each condition three replications were made for each plant and biochar was applied on them. Control plants (without biochar) were also grown in each condition. Parameters studied were pH, water holding capacity, ammonia, nitrates, chlorophyll content, fertility analysis, temperature and humidity, number of leaves, plant …

A Meta-Analysis Of Soil Biodiversity Impacts On The Carbon Cycle, M.-A. De Graaff, J. Adkins, P. Kardol, H. L. Throop

Biology Faculty Publications and Presentations

Loss of biodiversity impacts ecosystem functions, such as carbon (C) cycling. Soils are the largest terrestrial C reservoir, containing more C globally than the biotic and atmospheric pools together. As such, soil C cycling, and the processes controlling it, has the potential to affect atmospheric CO₂ concentrations and subsequent climate change. Despite the growing evidence of links between plant diversity and soil C cycling, there is a dearth of information on whether similar relationships exist between soil biodiversity and C cycling. This knowledge gap occurs even though there has been increased recognition that soil communities display high levels of …

Historical Common Names Of Great Plains Plants, With Scientific Names Index. Volume Ii: Scientific Names Index, Elaine Nowick

Zea E-Books Collection

Containing thousands of entries of both vernacular and scientific names of Great Plains plants, the literature that informs this exhaustive listing spans nearly 300 years. Author Elaine Nowick has drawn from sources as diverse as Linnaeus, Lewis and Clark, and local university extension publications to compile the gamut of practical, and often fanciful, common plant names used over the years. Each common name is accompanied by a definitive scientific name with references and authority information. Interspersed with scientifically-correct botanical line drawings, the entries are written in standard ICBN format, making this a useful volume for scholars as well as lay …

Investigating Seed Dispersal Distances And Long Distance Dispersal Mechanisms Of The Invasive Plant, Alliaria Petiolata, Christopher Loebach

Theses and Dissertations

Alliaria petiolata, an herbaceous plant, has aggressively invaded North American woodlands. It has been extensively studied to understand why it is a successful invader, but certain aspects of its biology have been understudied such as seed dispersal distances and long distance dispersal mechanisms (LDDM). My thesis experimentally measured A. petiolata seed dispersal distances and determined if epizoochory (external animal transport) is a LDDM. To measure dispersal distances, seed traps were placed around three A. petiolata seed point sources to capture dispersed seeds at increasing distances away from the point sources. Eight mathematical functions that describe dispersal distances were fitted to …

Tallgrass Prairie Vegetation Response To Spring Fires And Bison Grazing, Stephen L. Winter, Brady W. Allred, Karen R. Hickman, Samuel D. Fuhlendorf

School of Natural Resources: Faculty Publications

Spring fires in tallgrass prairie can create environmental conditions conducive to plant growth in the subsequent growing season. Following fires, burned areas can also be attractive to grazing animals such as bison (Bison bison). Sustained grazing activity within recently burned areas can alter vegetation structure relative to nearby landscape patches that haven’t burned recently. In 2007, we collected data on bison grazing activity, vegetation structure, and the growth and reproduction of a perennial forb, Arnoglossum plantagineum, in Oklahoma tallgrass prairie. We compared these variables in landscape patches that had burned in the spring of 2007 to measurements …

Cuban Treefrogs, Osteopilus Septentrionalis (Duméril & Bibron 1841) (Anura: Hylidae), And Other Nonindigenous Herpetofauna Interdicted In Grenada, Lesser Antilles., Louis A. Somma, Paul R. Graham

Papers in Herpetology

The number of introduced nonindigenous species of amphibians and reptiles within the greater Caribbean, including Grenada, is escalating and has become an ever-increasing critical conservation concern (Daudin and de Silva 2011; Powell et al. 2011; Powell and Henderson 2012). The amount of development, tourism, and consequent import commerce is increasing, requiring careful regulation of the pet trade and fauna introduced for biological control as well as diligence in cargo inspection. Herein we document the first records of nonindigenous Cuban Treefrogs, Osteopilus septentrionalis (Duméril and Bibron 1841), interdicted from cargo, along with recent interceptions of two species of nonindigenous lizards already …