Biodiversity Commons^™

Floristic Quality Assessments Of Remnant Natural Areas In The Greater Grand Rapids, Michigan Region: Evaluating Botanical Change Since The 1890s, Alan W. Stockdale, Garrett Crow, David P. Warners

Faculty and Professional Research

In 1901, Emma J. Cole, a beloved high school teacher and distinguished botanist, published Grand Rapids Flora. Cole’s floristic inventory remains the most comprehensive botanical study of the greater Grand Rapids, Michigan region, even though this area has experienced significant land- scape alterations since her publication. To address this knowledge gap, in 2014 we embarked on a multiple-year project aimed to discover and reassess the sites Cole described, as well as to catalog other natural remnant locations within the Grand Rapids area. This paper reports botanical invento- ries that were completed at eight sites within Kent County during 2015 and …

Inferring Food Web Structure To Identify Seasonal And Longitudinal Patterns In Ogeechee River Invertebrate Communities, Julien Marc Buchbinder

College of Graduate Studies: Theses & Dissertations

Understanding how the structure and function of aquatic communities vary across space and time is essential for proper management of freshwater ecosystems. Current management relies on rapid biomonitoring using metrics of community structure, but metrics that incorporate ecosystem processes and functions are only just beginning to see use in assessment and management. Food webs inferred from known species interactions have been proposed as a method of incorporating function into bioassessment without expending extra effort or sacrificing the cost-effectiveness of current monitoring schemes. To apply food webs in biomonitoring, it is first necessary to understand how communities and food webs vary …

A Rapid And Accurate Minion-Based Workflow For Tracking Species Biodiversity In The Field, Hendrik Freitag, Simone Maestri, Emanuela Cosentino, Marta Paterno, Jhoana M. Garces, Luca Marcolungo, Massimiliano Alfano, Iva Njunjić, Menno Schilthuizen, Ferry Slik, Michele Menegon, Marzia Rossato, Massimo Delledonne

Biology Faculty Publications

Genetic markers (DNA barcodes) are often used to support and confirm species identification. Barcode sequences can be generated in the field using portable systems based on the Oxford Nanopore Technologies (ONT) MinION sequencer. However, to achieve a broader application, current proof-of-principle workflows for on-site barcoding analysis must be standardized to ensure a reliable and robust performance under suboptimal field conditions without increasing costs. Here, we demonstrate the implementation of a new on-site workflow for DNA extraction, PCR-based barcoding, and the generation of consensus sequences. The portable laboratory features inexpensive instruments that can be carried as hand luggage and uses standard …

Trade-Offs Shape Carotenoid-Based Color Variation In Redheaded Pine Sawfly (Neodiprion Lecontei) Larvae, Maranda Gaines

Lewis Honors College Capstone Collection

Carotenoids serve various ecological roles in animals including coloration, immune responses, and vision. Carotenoid-derived coloration is greatly emphasized in the literature, particularly relating to mate choice and aposematic warning. However, the trade-offs between the color and non-color functions of carotenoids are not thoroughly explored. In the redheaded pine sawfly (Neodiprion lecontei), some larval populations have yellow pigmentation, using carotenoids derived from their diets for aposematic warning coloration. Other larval populations are white in color, having genetically lost the ability to produce the yellow pigment. Because carotenoids are essential to life functions in both the yellow and white populations, we aim …

Advancing Urban Wildlife Research Through A Multi-City Collaboration, Seth B. Magle, Mason Fidino, Elizabeth W. Lehrer, Travis Gallo, Matthew P. Mulligan, María Jazmín Ríos, Adam A. Ahlers, Julia L. Angstmann, Amy Belaire, Barbara Dugelby, Ashley Gramza, Laurel Hartley, Brandon Macdougall, Travis J. Ryan, Carmen M. Salsbury, Heather Sander, Christopher Schell, Kelly Simon, Sarah St. Onge, David Drake

Scholarship and Professional Work - LAS

Research on urban wildlife can help promote coexistence and guide future interactions between humans and wildlife in developed regions, but most such investigations are limited to short-term, single-species studies, typically conducted within a single city. This restricted focus prevents scientists from recognizing global patterns and first principles regarding urban wildlife behavior and ecol- ogy. To overcome these limitations, we have designed a pioneering research network, the Urban Wildlife Information Network (UWIN), whereby partners collaborate across several cities to systematically collect data to populate long-term datasets on multiple species in urban areas. Data collected via UWIN support analyses that will enable …

Quantifying Signpost Usage By Captive Male White-Tailed Deer, Cassie L. Auxt, Eric S. Michel, Jonathan A. Jenks

The Prairie Naturalist

White-tailed deer (Odocoileus virginianus) use rubbing of signpost structures to communicate during the breeding season. Rubbing of signpost structures allows deer to communicate via visual and chemical cues, which allows them to establish dominance hierarchies and maintain hierarchal status throughout the breeding season (Moore and Marchinton 1974, Miller et al. 1981, Hewitt 2011). Once a living tree is rubbed, the exposed light-colored sapwood creates a stark contrast in wooded areas, increasing visibility and further enticing deer to investigate the structure (Oehler et al. 1995). Anatomically, the tubular apocrine sudoriferous glands of white-tailed deer are located at the antler …

Management Recommendations For Ecological Restoration On The Little River Parcel, Maya Sady Partain, Garitt Mathews

Environmental Science & Management Senior Capstones

Ecological restoration is an important aspect of land management. Data collection and ongoing monitoring help inform restoration decisions and determine their effectiveness. In this project, we followed a monitoring protocol provided by the Trinidad Coastal Land Trust to assess the 2019 status of their Little River parcel, a fifteen-acre area near the mouth of Little River in Trinidad, California. We performed a site analysis of invasive plant species and recorded their extent and location, as well as noting other observations of the ecology, topography, and biology of the site. After making our observations, we recommended land management methods woven together …

Wpa News 110 (2019), World Pheasant Association

Galliformes Specialist Group and Affiliated Societies: Newsletters

WPA News (Winter 2019), number 110

Published by the World Pheasant Association

Effects Of Invasive Trees On Native Floodplain Forest Vegetation & Breeding Bird, Jacob Myers

Sustainable RIVER

No abstract provided.

A Changed River's Effects On Native Turtle Distribution, Marshall Kim

Sustainable RIVER

No abstract provided.

Suspended Sediment Contributions Of Nebraska Tributaries Along The 59-Mile, Nathan Cardona

Sustainable RIVER

No abstract provided.

The Importance Of Aquatic Insect-Derived Missouri River, Katy A. Mccarthy

Sustainable RIVER

No abstract provided.

Perceptions Of Multifunctional Landscapes Along The Missouri National Recreational River, Ann Mcgehrin

Sustainable RIVER

No abstract provided.

Long-Tailed Weasel (Mustela Frenata) Distribution Survey In Arkansas: Challenges In Detecting A Rare Species, Suzanne D. Johnston, D. Blake Sasse, Robert E. Kissell Jr.

Journal of the Arkansas Academy of Science

Long-tailed weasels (Mustela frenata) have one of the widest distributions of mustelids in the western hemisphere and were distributed across a majority of the American continents ranging from Canada through the contiguous United States, Mexico, and into northern South America. However, on a local scale they are considered uncommon and rare. We assessed the distribution of long-tailed weasels across Arkansas to determine occupancy in each ecoregion of Arkansas, and determined the detectability on two local, adjacent sites. No long-tailed weasels were detected within the ecoregions, but the species was detected with intensive sampling on one local site. It …

Птицы Восточного Саяна / Birds Of The Eastern Sayan, Tsydypzhap Zayateevich Dorzhiev, Yuri Anatolyevich Durnev, Marina Vitalievna Sonina, Erdeni Nikolaevich Elaev, A. A. Baranov

Zea E-Books Collection

The monograph presents data on the distribution and ecology of 340 species of birds found on the territory of the poorly studied highland — the Eastern Sayan. An ecological systematic and faunogenetic analysis of the region’s avifauna has been carried out. We reveal some features of the birds' way of life in the extreme natural conditions of the mountains of Southern Siberia.

The book is intended for all who are of interest in the wildlife of Siberia, as well as for biology teachers and students, ecologists.

В монографии приведены данные о распространении и экологии 340 видов птиц, отмеченных на территории …

Fishers' Ecological Knowledge And Stable Isotope Analysis: A Social-Ecological Systems Approach To Endangered Species Conservation, Kathryn Rose Wedemeyer-Strombel

Open Access Theses & Dissertations

Identifying developmental habitat is essential for understanding population structure and species resiliency, especially for critically endangered species. In long-lived, oceanic, migratory animals such as sea turtles, elucidating developmental grounds is particularly difficult. When data are deficient or challenging to acquire, scientists often lean towards traditional quantitative methods when a social-ecological systems approach could better provide crucial baseline data and guiding information. Fishers’ ecological knowledge (FEK), the combination of experiential and culturally transmitted knowledge, is expert knowledge and should be treated as such. In 2008, FEK led to the “rediscovery” of the critically endangered eastern Pacific (EP) population of hawksbill sea …

Gateways-Nd: Building The Institutional Infrastructure Towards Viable Postsecondary Stem Education Reform, J.M.D. Motschenbacher, M. Vosen Callens, J. Nyachwaya, E. Berg, J. Ladbury, R. Reichenbach, P. Kelter

School of Natural Resources: Documents and Reviews

No abstract provided.

The Impact Of Tree Species, Elevated Nitrogen Deposition, Stand Age, And Environmental Factors On Herbaceous Plant Communities In A Central Appalachian Hardwood Forest, Lacey J. Smith

Graduate Theses, Dissertations, and Problem Reports (ETD)

Although the herb layer represents less than 1% of the biomass of temperate forests, this layer may contain up to 90% of the plant species in the forest and can contribute up to 20% of the foliar litter, thus playing an essential role in forest biodiversity and nutrient cycling. The objectives of this study were to investigate the differences in cover, species richness, Shannon-Wiener diversity, and evenness of herb layer plants a) under tree species associated with contrasting soil nitrogen levels and b) in watersheds that vary in nitrogen deposition, stand age, and watershed aspect at the Fernow Experimental Forest …

Avian Occupancy Dynamics And Canada Warbler (Cardellina Canadensis) Environmental Correlates On A Central Appalachian Elevation Gradient In West Virginia, Gordon W. Dimmig

Graduate Theses, Dissertations, and Problem Reports (ETD)

Mountains are important areas for avian diversity and conservation since they have steep elevational and environmental gradients. In the central Appalachian Mountains, several songbird species have trailing edge populations that are restricted to high elevations. Climate change and other factors can cause species distributions to change, which is of particular concern for birds in restricted trailing edge populations. Additionally, the Canada Warbler (Cardellina canadensis) breeds throughout the Appalachian Mountains and is species of conservation concern due to range-wide population declines. For this project, I used avian point count data from the central Appalachian Mountains to: (1) evaluate the …

Island Invasion: The Silent Crisis In Hawaii, Sophia Janssen

Pomona Senior Theses

Keeping out invasive species may, upon first review, seem like a trivial environmental cry from ecologists and deep environmentalists; a belated wish to return to an undeveloped world where nature was pristine. However invasive species create problems that impact all of us and can have far more severe consequences than changing a stunning landscape. These problems are heightened in islands like Hawaii, where the fragile ecosystems have developed over centuries of evolution and adaptation. The introduction of a disease-carrying mosquito can put the people of Hawaii at risk to many vector-born illnesses and create an epidemic, taking human life. The …

Resurrection Of An East African House Bat Species, Scotophilus Altilis (Chiroptera: Vespertilionidae), Peter Vallo, Deeann Reeder, Megan E. Vodzak, Petr Benda

Faculty Journal Articles

Several house bat specimens superficially resembling the white-bellied house bat Scotophilus leucogaster (Cretzschmar, 1830), were recently captured in southwestern Ethiopia and southern South Sudan. These S. cf. leucogaster differed from typical S. leucogaster by their slightly smaller size and ventral coloration, conforming instead with the original description of S. altilis Allen, 1914. Scotophilus altilis is an overlooked taxon known from the Blue Nile region in Sudan that is currently considered a junior synonym of S. leucogaster. Phylogenetic analysis of mitochondrial cytochrome b gene (cytb) sequences revealed S. cf. leucogaster as a sister clade …

Pangolins In Global Camera Trap Data: Implications For Ecological Monitoring, Hannah Khwaja, Claire Buchan, Oliver R. Wearn, Laila Bahaa-El-Din, Drew Bantlin, Henry Bernard, Robert Bitariho, Torsten Bohm, Jimmy Borah, Jedediah Brodie, Wanlop Chutipong, Byron Du Preez, Alex Ebang-Mbele, Sarah Edwards, Emilie Fairet, Jackson L. Frechette, Adrian Garside, Luke Gibson, Anthony Giordano, Govindan Veeraswami Gopi, Alys Granados, Sanjay Gubbi, Franziska Harich, Barbara Haurez, Rasnys W. Havmoller, Olga Helmy, Lynne A. Isbell, Kate Jenks, Riddhika Kalle, Anucha Kamjing, Daphawan Khamcha, Cisquet Kiebou-Opepa, Margaret Kinnaird, Caroline Kruger, Anne Laudisoit, Antony Lynam, Suzanne E. Macdonald, John Mathai, Julia Metsio Sienne, Amelia Meier, David Mills, Jayasilan Mohd-Azian, Yoshihiro Nakashima, Helen C. Nash, Dusit Ngoprasert, An Nguyen, Tim O'Brien, David Olson, Christopher Orbell, John Poulsen, Tharmalingam Ramesh, Deeann Reeder, Rafael Reyna, Lindsey N. Rich, Johanna Rode-Margono, Francesco Rovero, Douglas Sheil, Matthew H. Shirley, Ken Stratford, Niti Sukumal, Saranphat Suwanrat, Naruemon Tantipisanuh, Andrew Tilker, Tim Van Berkel, Leanne K. Van Der Weyde, Matthew Varney, Florian Weise, Ingrid Wiesel, Andreas Wilting, Seth T. Wong, Carly Waterman, Daniel W S Challender

Faculty Journal Articles

Despite being heavily exploited, pangolins (Pholidota: Manidae) have been subject to limited research, resulting in a lack of reliable population estimates and standardised survey methods for the eight extant species. Camera trapping represents a unique opportunity for broad-scale collaborative species monitoring due to its largely non-discriminatory nature, which creates considerable volumes of data on a relatively wide range of species. This has the potential to shed light on the ecology of rare, cryptic and understudied taxa, with implications for conservation decision-making. We undertook a global analysis of available pangolin data from camera trapping studies across their range in Africa and …

The Diversity Of Terrestrial Mammals Surrounding Waterfall At Billy Barquedier National Park, Kelsey Johnson, Jason Apple

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

Billy Barquedier is a National Park located in the Stann Creek district of Belize that contains Neotropical vegetation and wildlife. This study was performed to provide a baseline inventory and appearance frequency patterns of the terrestrial mammals located within Zone 1 of the park near a waterfall and to gain a greater understanding of the biodiversity and activity patterns of terrestrial mammals within the park. The methods included camera traps, small Sherman live traps, large live traps, and tracking methods. A non-random sampling method of placing camera traps and live traps on or near human-made or animal-made trails was used …

Plant Community Response To Novel Silvicultural Treatments In Great Lakes Northern Hardwoods, Stefan F. Hupperts

Dissertations, Master's Theses and Master's Reports

The objective of this dissertation is to assess plant community response across a range of silvicultural disturbances and test ecological hypotheses to better inform ecologists and forest managers. To provide context for the utility of revising silvicultural systems, I review natural disturbance regimes and historical practices that have shaped contemporary Great Lakes northern hardwood forests (Chapter 2). Further, I identify important ways to expand the silvicultural toolbox and better emulate natural disturbance regimes. Building on this theoretical underpinning, I investigate the initial regeneration and plant community response to two novel silvicultural experiments: the Northern Hardwood Experiment for Enhancing Diversity (NHSEED) …

Photographic Record Of A Greater Roadrunner (Geococcyx Californianus) From Drew County, Arkansas, John L. Hunt, Christopher G. Sims

Journal of the Arkansas Academy of Science

No abstract provided.

Shade Trees Preserve Avian Insectivore Biodiversity On Coffee Farms In A Warming Climate, Sarah L. Schooler

Cal Poly Humboldt theses and projects

Coffee is an important export in many developing countries, with a global annual trade value of $100 billion. Climate change is projected to drastically reduce the area where coffee is able to be grown. Shade trees may mitigate the effects of climate change through temperature regulation for coffee growth, temperature regulation for pest control, and increase in pest-eating bird diversity. The impact of shade on bird diversity and microclimate on coffee farms has been studied extensively in the Neotropics, but there is a dearth of research in the Paleotropics. I examined the local effects of shade on bird presence and …

Bird Window Strikes On A College Campus: Mortality Estimates And Possible Mitigation, Antarius D. Mclain

College of Graduate Studies: Theses & Dissertations

Understanding the impact that human development has on wildlife populations is essential to preserving biodiversity. Bird populations are a good indicator of anthropogenic threats because they are sensitive to environmental change. Window strikes are a major source of mortality for bird populations. Studies have begun to monitor factors that cause window strikes and estimate the amount of birds killed annually by strikes. However, these estimates can be greatly affected by site dependent variables and scavenging of carcasses. My study addresses this issue by answering four questions: First, how many birds are killed annually on campus? Second, what factors complicate making …

The Intrinsic Value Of Nature, Joanna E. Lambert

Animal Sentience

Treves et al. explain the need to preserve the rights of nonhuman species, human youth, and future generations. Although conservation biology has claimed to have an intrinsic valuation ethic since its inception in the 1980s, many aspects of the field have taken a decidedly anthropocentric and instrumentalist trajectory. This has important consequences for conservation-related policy and practice at all scales: local, regional, and global.

The Gut Microbiome: Is Fecal Matter Microbial Composition A Proxy For Intestinal Microbial Composition In Studies Of The Microbiome, Enique Reyes

All Master's Theses

As many health phenomena seem to be affected directly and indirectly by the microbiome, gut microbiome research has increased in the last decade. Issues such as allergies, cancer, obesity, and other health complications have been shown to be influenced by the microbiome. Most of gut microbiome research is done by collecting and sequencing the DNA of the microbiome of the fecal matter from model organisms or human subjects. Studies that use this method of sample collection and analysis assume that fecal matter microbiomes are similar to intestinal microbiomes, and that it can be used as a proxy. At present, no …

Goldeye Hidon Alosoides Calorimetry In Red Lake, Jesse Mendel

Journal of Earth and Life Science

Goldeye Hiodon alosoides are found across North America and are a relatively unstudied group of fish as they have had no economic value in the past. Ecologically speaking, these fish could have importance to the waters that they inhabit, as they are prey to fishes like Walleyes Sander vitreus, Northern Pike Esox lucius, and Muskellunge Esox masquinongy. These fish could potentially be vital to predatory fishes because of the amount of oil found in these fish, creating gram for gram more energy than compared to other consumable substances. The average energy density for all Goldeye was 6.73 …