Biodiversity Commons^™

Fostering Socio-Ecological Resilience To Wildfire By Interconnecting Knowledge Systems At Cal Poly Humboldt, Jeffrey M. Kane, Erin Kelly, Benjamin Graham, David Greene

Humboldt Journal of Social Relations

The wildfire-related challenges of Northern California and many other regions in the western United States are daunting in scope and magnitude. Ecologically and culturally salient solutions that limit the negative impacts of wildfire and promote resilience of human and ecological systems will require newer approaches. Through Cal Poly Humboldt and the Fire Resilience Institute, there is greater emphasis on the interconnection of knowledge systems across education, training, research, and management. Here we highlight several on-going efforts that seek to enhance the fire resilience workforce, promote socio-ecological resilience through interdisciplinary projects, and inform management through monitoring and research projects that intentionally …

Effects Of Translocation On Eastern Black-Tailed Rattlesnakes (Crotalus Ornatus) In The Northern Chihuahuan Desert, Jacob A. Coffman

Lewis Honors College Thesis Collection

AS HUMANITY continues to grow and expand, we inevitably encroach on wildlife habitat. This can create conflict between humans and wildlife. Human wildlife conflict usually occurs when humans are near areas where wildlife typically reside. A prime example is a farmer coming into conflict with animals that predate their seeds or livestock. The most common response to this problem in many areas is lethal control to prevent economic loss (Dickman 2010). This seems like an immediate resolution of the conflict in the human’s perspective, but this action can have many adverse effects. This killing may result in negative social outcry, …

Insect Biodiversity Of Select Areas In The Western Suburbs Of Chicago, Bradley Dawson

Department of Entomology: Distance Master of Science Projects

Introduction

Insects make up an integral part of the landscape in North America and across the world. They occupy a myriad of niches in food webs, function as predators and prey, and provide environmental services like pollination of flowering plants and decomposition of dead animal carcasses and fecal matter. They take part in ecosystems that are often delicately balanced, and so conservation is often a worthwhile effort in areas that would otherwise be trampled by human activity. In the western suburbs of Chicago, Illinois where I reside, there is a mix of both heavily developed areas as well as some …

Wpa News 122 (2023), World Pheasant Association

Galliformes Specialist Group and Affiliated Societies: Newsletters

WPA News (Winter 2023), number 122

Published by the World Pheasant Association

Investigating The Potential For Industrial Dairy Farms To Move Towards Sustainability In Western Michigan, Kendra Kay Slater, Rebecca Williams

Student Summer Scholars Manuscripts

Industrial dairy farms, also referred to as concentrated animal feeding operations (CAFOS) or factory farms, are often known for the negative effects they have on the environment and animals. However, these farms are the backbone of our food systems supplying 99% of our dairy and meat in the United States. In this qualitative case study, we conduct in-depth interviews and farm transect walks with five industrial dairy farmers in Western Michigan to examine how they view and define sustainability, how they incorporate sustainable practices on their farms, and what they perceive as the barriers to industrial dairy sustainability. To analyze …

Have Rusty Crayfish Affected The Diets Of Yellow Perch?, Matthew D. Kvam

Journal of Earth and Life Science

Freshwater ecosystems are some of the most susceptible to invasive species. It is one of the reasons they face the highest levels of species endangerment. Rusty crayfish Faxonius rusticus are one such invasive species, they fragment food webs and negatively affect native species. However, it seems as though native species are beginning to rely on them as a source of food. Yellow perch Perca flavescens, an important forage and game species, is one such species that is highly affected by these invasions. At smaller sizes yellow perch primarily feed on invertebrates whose populations are degraded by rusty crayfish. Therefore, the …

Biomechanics Of Mantis Prey Capture, Danielle S. Taylor

Honors Theses

Mantis species have a variety of different morphologies, so do the extreme forms of mantis limbs trade prey catching capability for camouflage? We hypothesize that some extreme forms of mantis limbs that are associated with cryptic species may be associated with a tradeoff of the capability of those limbs. Previous research has developed 2D morphologies of several hundred species of mantises. We are creating a 3D morphology by using micro dissection, micro CT imaging to construct our 3D biomechanical model. We found the attachment points of the ligaments and muscles from a Tenodera forearm and have constructed a 2D biomechanical …

Conservation Easements: A Tool For Preserving Wildlife Habitat On Private Lands, Robin M. Rotman, Sarah A. Brown, Michael A. Powell, Sonja A. Wilhelm Stanis

Faculty Publications

Conservation easements are an essential tool for conserving private lands, and they have great potential for enhancing wildlife habitat and biodiversity. Private land conservation in the United States is likely to increase in the coming years, in light of Executive Order No. 14,008, issued by President Joseph Biden on January 27, 2021, which set a goal of conserving at least 30% of U.S. lands and waters by 2030 (Executive Office of the President 2021). There is, therefore, a need to evaluate the effect of conservation easements on wildlife habitat and biodiversity and to make recommendations for further enhancing the effectiveness …

Predators In Paradise: Ecotourism And Predator-Prey Dynamics In Monteverde, Costa Rica, Andrew Cremeans

Undergraduate Theses, Professional Papers, and Capstone Artifacts

The use of camera trap surveys is increasingly common to investigate recurring diel activity of mammals. Investigation into the temporal overlap of mammals can provide unique insights into predator-prey dynamics. Understanding this relationship is essential to effectively manage and conserve both species. Extensive research across the tropics has found that daily activities of mammals were shaped by thermoregulation and trophic location in food webs. Although broad scale studies of daily patterns of mammals have enhanced our understanding of these constraints, many study sites included were remote protected areas under strict conservation measures. Such protected areas often had full complements of …

Natural Variation In Temperature-Modulated Immunity To Pseudomonas Syringae Pv. Tomato (Pst Dc3000) In Arabidopsis Thaliana Plants, Christina A. M. Rossi

Theses and Dissertations (Comprehensive)

Studies conducted on the model plant-pathogen system Arabidopsis thaliana-Pseudomonas syringae pv. tomato (Pst) showed that elevated temperature suppresses the pathogen-induced production of salicylic acid (SA), which is a key plant defence hormone. This increased host vulnerability at higher temperatures is due to downregulated expression of CALMODULIN BINDING PROTEIN 60-LIKE G (CBP60g) and SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1), which encode master regulators of SA production. Collectively, these previous studies only focused on one natural accession of Arabidopsis called Columbia-0 (Col-0). However, the intraspecific variation in Arabidopsis immunity phenotypes under elevated temperature remains unknown. To fill this critical knowledge gap, my …

Moving Beyond The Panarchy Heuristic, David G. Angeler, Craig R. Allen

School of Natural Resources: Documents and Reviews

No abstract provided.

Evolution Of The Southwest Drought Learning Network: Collective Response To Exceptional Drought, E. Elias, B. Fuchs, J. Lisonbee, T. Bernadt, V. Martinez, T. Haigh

School of Natural Resources: Documents and Reviews

No abstract provided.

Richard W. Heard, Sara E. Lecroy, Joyce M. Shaw, Chet F. Rakocinski

Gulf and Caribbean Research

No abstract provided.

Remote Sensing Of Georgia Tidal Marsh Habitats Using Aerial Photography And Planetscope Satellite Imagery, Harrison M. Currin

College of Graduate Studies: Theses & Dissertations

Globally, tidal marshes cover about 90,800 km. Within the state of Georgia tidal marshes are primarily located behind the barrier islands and total 1,619 km². The combination of high salinity environments and daily inundation, and being dependent on river output, make these dynamic systems. Tidal marshes provide numerous ecosystem services such as carbon and nitrogen sequestration, flood control, coastal protection, and numerous biogeochemical processes. Due to their unique position, tidal marshes are under threat from sea level rise, drought, coastal development, and large-scale disturbance events. Tidal freshwater marshes are especially susceptible to these threats due to their geographic …

Bat Activity And Insect Biomass On Mcconnell Airforce Base Compared To Surrounding Wichita Parks, Michaela Sielaff

Master's Theses or Doctor of Nursing Practice

Bats are bioindicators of the communities to which they belong, giving researchers insight into the overall health of those ecosystems. Bats are also very adaptable and are capable of tolerating urbanization. Some species, such as Lasiurus borealis and Lasionycteris noctivagans may even benefit from adjacent industrial and commercial land use, although this is not the case for all bat species. In 2021, we began acoustic and mist net surveys of bats at McConnell Air Force Base (MAFB, or “base”) in Wichita, KS. However, no bats were captured or seen during mist net surveys, although some were detected acoustically over a …

Global Phylogenomic Assessment Of Leptoseris And Agaricia Reveals Substantial Undescibed Diversity At Mesophotic Depths, J. C. Gijsbers, N. Englebert, K. E. Prata, M. Pichon, Z. Dinesen, R. Brunner, G. Eyal, F. L. González-Zapata, S. E. Kahng, K. R. W. Latijnhouwers, P. Muir, V. Z. Radice, J. A. Sánchez, M. J. A. Vermeij, O. Hoegh-Guldberg, S. J. Jacobs, P. Bongaerts

Biological Sciences Faculty Publications

Background: Mesophotic coral communities are increasingly gaining attention for the unique biological diversity they host, exemplified by the numerous mesophotic fish species that continue to be discovered. In contrast, many of the photosynthetic scleractinian corals observed at mesophotic depths are assumed to be depth-generalists, with very few species characterised as mesophotic-specialists. This presumed lack of a specialised community remains largely untested, as phylogenetic studies on corals have rarely included mesophotic samples and have long suffered from resolution issues associated with traditional sequence markers.

Results: Here, we used reduced-representation genome sequencing to conduct a phylogenomic assessment of the two dominant mesophotic …

Biodiversity Of Philippine Marine Fishes: A Dna Barcode Reference Library Based On Voucher Specimens, Katherine E. Bemis, Matthew G. Girard, Mudjekeewis D. Santos, Kent E. Carpenter, Jonathan R. Deeds, Diane E. Pitassy, Nicko Amor L. Flores, Elizabeth S. Hunter, Amy C. Driskell, Kenneth S. Macdonald Iii, Lee A. Weigt, Jeffrey T. Williams

Biological Sciences Faculty Publications

Accurate identification of fishes is essential for understanding their biology and to ensure food safety for consumers. DNA barcoding is an important tool because it can verify identifications of both whole and processed fishes that have had key morphological characters removed (e.g., filets, fish meal); however, DNA reference libraries are incomplete, and public repositories for sequence data contain incorrectly identified sequences. During a nine-year sampling program in the Philippines, a global biodiversity hotspot for marine fishes, we developed a verified reference library of cytochrome c oxidase subunit I (COI) sequences for 2,525 specimens representing 984 species. Specimens were primarily purchased …

A Multi-Taxon Analysis Of European Red Lists Reveal Major Threats To Biodiversity, Axel Hochkirch, Melanie Bilz, Catarina C. Ferreira, Anja Danielczak, David Allen, Ana Nieto, Carlo Rondinini, Kate Harding, Craig Hilton-Taylor, Caroline M. Pollock, Mary Seddon, Jean-Christophe Vié, Keith N. A. Alexander, Emily Beech, Manuel Biscoito, Yoan Braud, Ian J. Burfield, Filippo Maria Buzzetti, Marta Cálix, Kent E. Carpenter, Ning Labbish Chao, Dragan Chobanov, Maarten J. M. Christenhusz, Bruce B. Collette, Mia T. Comeros-Raynal, Neil Cox, Matthew Craig, Annabelle Cuttelod, William R. T. Darwall, Benoit Dodelin, Nicholas K. Dulvy, Eve Englefield, Michael F. Fay, Nicholas Fettes, Jörg Freyhof, Silvia García, Mariana García Criado, Michael Harvey, Nick Hodgetts, Christina Ieronymidou, Vincent J. Kalkman, Shelagh P. Kell, James Kemp, Sonia Khela, Richard V. Lansdown, Julia M. Lawson, Danna J. Leaman, Joana Magos Brehm, Nigel Maxted, Rebecca M. Miller, Eike Neubert, Baudewijn Odé, David Pollard, Riley Pollom, Rob Pople, Juan José Presa Asensio, Gina M. Ralph, Hassan Rankou, Malin Rivers, Stuart P. M. Roberts, Barry Russell, Alexander Sennikov, Fabien Soldati, Anna Staneva, Emilie Stump, Andy Symes, Dmitry Telnov, Helen Temple, Andrew Terry, Anastasiya Timoshyna, Chris Van Swaay, Henry Väre, Rachel H. L. Walls, Luc Willemse, Brett Wilson, Jemma Window, Emma G. E. Wright, Thomas Zuna-Kratky

Biological Sciences Faculty Publications

Biodiversity loss is a major global challenge and minimizing extinction rates is the goal of several multilateral environmental agreements. Policy decisions require comprehensive, spatially explicit information on species’ distributions and threats. We present an analysis of the conservation status of 14,669 European terrestrial, freshwater and marine species (ca. 10% of the continental fauna and flora), including all vertebrates and selected groups of invertebrates and plants. Our results reveal that 19% of European species are threatened with extinction, with higher extinction risks for plants (27%) and invertebrates (24%) compared to vertebrates (18%). These numbers exceed recent IPBES (Intergovernmental Platform on Biodiversity …

Rapidly Changing Range Limits In A Warming World: Critical Data Limitations And Knowledge Gaps For Advancing Understanding Of Mangrove Range Dynamics In The Southeastern Usa, Rémi Bardou, Michael J. Osland, Steven Scyphers, Christine Shepard, Karen E. Aerni, Jahson B. Alemu I, Robert Crimian, Richard H. Day, Nicholas M. Enwright, Laura C. Feher, Sarah L. Gibbs, Kiera O'Donnell, Savannah H. Swinea, Kalaina Thorne, Sarit Truskey, Anna R. Armitage, Ronald Baker, Josh L. Breithaupt, Kyle C. Cavanaugh, Erik S. Yando, A. Randall Hughes, Et Al.

Biological Sciences Faculty Publications

Climate change is altering species’ range limits and transforming ecosystems. For example, warming temperatures are leading to the range expansion of tropical, cold-sensitive species at the expense of their cold-tolerant counterparts. In some temperate and subtropical coastal wetlands, warming winters are enabling mangrove forest encroachment into salt marsh, which is a major regime shift that has significant ecological and societal ramifications. Here, we synthesized existing data and expert knowledge to assess the distribution of mangroves near rapidly changing range limits in the southeastern USA. We used expert elicitation to identify data limitations and highlight knowledge gaps for advancing understanding of …

The Long-Term Effects Of Wildfire Severity On Oak-Pine Communities And Their Microclimates, Scott Glenn Culbert

Theses and Dissertations--Forestry and Natural Resources

In the eastern U.S., fire-dependent tree species have historically dominated upland forest communities, but are now experiencing widespread regeneration challenges as a result of 20^th century fire suppression policies, and are being replaced by mesophytic species. Wildfires that contain areas of high burn severity may provide an important means of mitigating these challenges and facilitating fire-dependent species regeneration and recruitment into larger size classes. One mechanism by which high-severity fire can accomplish this is by modifying understory microclimate characteristics to be more conducive to these species’ growth. A wildfire within the Daniel Boone National Forest, Kentucky, USA, provided the …

Effects Of Forest Reclamation And Landscape Features On Avian Occupancy, Species Richness, And Abundance In Appalachia, Rebecca N. Davenport

Theses and Dissertations--Forestry and Natural Resources

The Forestry Reclamation Approach (FRA) is a recently developed coal mining reclamation method that emphasizes best management practices in forestry, such as the planting of native trees and shrubs. Although the FRA is expected to benefit wildlife, no studies have empirically examined the effects of the FRA on avian species. My study aimed to identify which reclamation approaches and/or landscape features promote breeding songbirds, particularly mature forest avian guilds and species of conservation need. I conducted point count surveys in the Appalachian Mountains of eastern West Virginia and assessed differences in avian occupancy, species richness, and species abundance between four …

Pond-Breeding Amphibian Responses To Wetland Creation And Reforestation On A Legacy Surface Mine In The Monongahela National Forest, Lauren Breanna Sherman

Theses and Dissertations--Forestry and Natural Resources

Surface mine reclamation has been an evolving practice since the Surface Mining Control and Reclamation Act was passed in 1977, holding mining companies accountable for returning ecological function to areas directly impacted by mining activities. One recent method of reclamation, the Forestry Reclamation Approach (FRA), aims to enhance reforestation and ecosystem function through the creation of wetlands, as opposed to traditional methods that often revert land to grasslands. However, wildlife response to FRA has rarely been investigated. The goal of this project was to analyze the effects of the four treatment types, FRA in two chronosequences, natural regeneration, and unmined …

Evaluation Of Autonomous Recording Unit Performance In Detecting Black-Billed Cuckoos, Jenna L. Asnault

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Black-billed Cuckoos (Coccyzus erythropthalmus) are classified as a species of concern in Montana and have declined due to habitat loss and fragmentation. Cuckoos are challenging to study, as they do not move or call frequently in the presence of people. This makes researching and managing these birds difficult. Autonomous acoustic survey methods offer the potential to be more effective than traditional avian survey methods. Autonomous recording units (ARUs) are small, programmable, relatively inexpensive acoustic detectors, and have been used in several other studies. Cuckoos, however, nest and perch in dense riparian vegetation, potentially limiting the detection capabilities of …

Spartina Species Invasive In Coastal Salt Marshes And Mudflats Of The Pacific Northwest, Gabriel E. Campbell, Ashley Newcomb, Jacob Rose

Center for Lakes and Reservoirs Publications and Presentations

Spartina (cordgrass) species are invasive plants that threaten the Pacific Northwest of the United States of America. This document contains a literature review, map of known occurrences, and identification guide of Spartina species invasive in coastal salt marshes and mudflats of the Pacific Northwest.

Harnessing Citizen Science And Collections Data For Invasive Plant Surveillance, Adin L. Ring

Library Map Prize

Our main source of information about the distribution of invasive plants in the United States comes from occurrence records in three categories: biological collections (physical plant specimens in museums), citizen science (opportunistic observations by untrained civilians), and invasion monitoring (structured observation by government or non-profit agencies). This study compiles a set of 3.1 million occurrence records of 3,578 introduced plant species in the continental United States, and infers spatial, temporal, and taxonomic biases by comparing the three categories of data. We find that citizen science contributes the largest bulk of records, and does better capturing visually conspicuous plants and very …

Corals At The Edge Of Environmental Limits: A New Conceptual Framework To Re-Define Marginal And Extreme Coral Communities, Verena Schoepf, Justin H. Baumann, Daniel J. Barshis, Nicola K. Browne, Emma F. Camp, Steeve Comeau, Christopher E. Cornwall, Héctor M. Guzmán, Bernhard Riegl, Riccardo Rodolfo-Metalpa, Brigitte Sommer

Biological Sciences Faculty Publications

The worldwide decline of coral reefs has renewed interest in coral communities at the edge of environmental limits because they have the potential to serve as resilience hotspots and climate change refugia, and can provide insights into how coral reefs might function in future ocean conditions. These coral communities are often referred to as marginal or extreme but few definitions exist and usage of these terms has therefore been inconsistent. This creates significant challenges for categorising these often poorly studied communities and synthesising data across locations. Furthermore, this impedes our understanding of how coral communities can persist at the edge …

Are Biodiverse Communities More Resistant To Invasion? A Case Study With Marine Fouling Communities, Taylor Robert Bruntil

Cal Poly Humboldt theses and projects

The theory of biotic resistance predicts that more diverse communities should be less susceptible to invasion by novel species, but given the opposing results of multiple observational and experimental studies in marine systems, it is unclear how changes in environmental conditions can affect invasion success in communities that differ in diversity. I used marine fouling communities to test how the diversity of the species present in an initial community (hereafter termed “resident species”) affected the establishment and growth of all species not present in the initial communities (hereafter termed “novel species”) at two locations at the Eureka Public Marina, in …

Intestinal Parasite Infection In Tibetan Macaques (Macac Thebetana) In Eastern China, Miarisoa Ramilison

All Master's Theses

Grooming is one of the crucial social behaviors of primate species that functions to remove parasites and maintain social bonds. Although, much data exists to support the idea that grooming is essential in forming and sustaining social bonds among individuals, there is a lack of information about the extent to which it removes ectoparasites or contributes to the spread of internal parasites. To fill this gap in the literature, we investigated the relationship between social contact behavior including grooming and intestinal parasite infection in Tibetan macaques (Macaca thibetana). This species lives at Mt. Huangshan in China. We used …

Effect Of Soil Transplantation On Fungal Communities During Restoration, Thomas Luehl

All Master's Theses

Ectomycorrhizal fungi are integral parts of natural ecological systems that provide access to nutrients that would otherwise be unavailable by forming symbiotic relationships with plants. Relationships with ectomycorrhizal fungi are known to improve plant growth rate, increase plant resistance to pathogens, and improve survival. Current revegetation practices often ignore this relationship between fungi and plants. During the revegetation of the Interstate 90 Keechelus Lake wildlife overcrossing (Easton, WA), soil from forest sites adjacent to the restoration area were collected and used to inoculate a set of experimental plots to determine whether ectomycorrhizal fungi would become established in the plots and …

Effects Of Solar Arrays On Southwestern Desert Thermal Landscapes: Consequences For Terrestrial Ectotherms, Adrian Slade

All Master's Theses

Solar energy development in the Southwestern United States coincides with habitat for many sensitive and endemic species, including reptiles such as Mojave Fringe-toed Lizards and Mojave Desert Tortoises who are threatened by a warming and drying climate. While utility-scale solar energy reduces carbon emissions and should ultimately benefit climate-sensitive species, it locally destroys fragile desert habitat, displaces wildlife, and has been shown to incur local air and surface temperature changes. Mitigation-based translocation of wildlife species in the face of solar development yields mixed results, and the unprecedented pace of solar expansion in the desert highlights the need for alternative practices …