Animal Sciences Commons^™

See No, Smell No, Taste No Evil: How Sage-Grouse Detect Toxic Sagebrush, K. Gehlken, B. Robb, S. Agafonov, J. Forbey

College of Arts and Sciences Poster Presentations

There is increasing evidence that sage-grouse selectively consume individual and species of sagebrush that have the lowest concentrations of chemical defenses, or toxins. We propose that this selection requires the ability to see, smell or taste specific chemicals or groups of chemicals that vary quantitatively and qualitatively in sagebrush available throughout the winter range of sage-grouse. We are developing methods to determine if and how selected and avoided sagebrush may differ in color, smell and taste. We used ultraviolet and near infrared detectors to determine the variation in the "color" of phenolics in sagebrush. We used gas chromatography to determine …

Additions To The Taiwan Marine Eel Fauna With First Records Of Three Rare Moray Eels (Anguilliformes: Muraenidae), Kar-Hoe Loh, Kwang-Tsao Shao, Hong-Ming Chen

Journal of Marine Science and Technology–Taiwan

The specimens of three new records of moray eels (Anguilliformes: Muraenidae) were identified for the first time off the eastern (Changbin) and southern (Kenting) coast of Taiwan. They were Enchelynassa canina (Quoy and Gaimard), Gymnothorax elegans Bliss and Gymnothorax fuscomaculatus (Schultz). The monotypic genus Enchelynassa which had only one species in the genus was also a newly recorded genus to Taiwan. In this paper, we reported the three rare moray species, included diagnostic characters and the fresh coloration on whole body, head, dorsal and ventral sides; as well as their dentitions; and the key to the relative species.

News Of The Department Of Animal Science, Department Of Animal Science

Animal Science Newsletters

No abstract provided.

Fishermen, Politics, And Participation: An Ethnographic Examination Of Commercial Fisheries Management In St. Croix, U.S. Virgin Islands, Cynthia Grace-Mccaskey

USF Tampa Graduate Theses and Dissertations

Currently, there is widespread debate regarding the overall status of the world's fisheries, with some researchers projecting their total collapse in only a few decades, and others concluding the situation is not quite as bleak. Additional debates include what strategies should be used to manage fisheries at various scales, and further research is needed to determine which strategies are most appropriate for use in particular situations and locales, as context is critical.

Recently, prominent common pool resources scholars have expressed the need for ethnographic approaches to studying resource management institutions in order to move beyond the current focus of simply …

A Spatially Explicit Agent Based Model Of Muscovy Duck Home Range Behavior, James Howard Anderson

USF Tampa Graduate Theses and Dissertations

ABSTRACT

Research in GIScience has identified agent-based simulation methodologies as effective in the study of complex adaptive spatial systems (CASS). CASS are characterized by the emergent nature of their spatial expressions and by the changing relationships between their constituent variables and how those variables act on the system's spatial expression over time. Here, emergence refers to a CASS property where small-scale, individual action results in macroscopic or system-level patterns over time. This research develops and executes a spatially-explicit agent based model of Muscovy Duck home range behavior. Muscovy duck home range behavior is regarded as a complex adaptive spatial system …

Response Of Channel × Blue Hybrid Catfish To Chronic Diurnal Hypoxia, Bartholomew W. Green, Steven D. Rawles, Benjamin H. Beck

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Performance traits and metabolic responses of the channel × blue hybrid catfish (Ictalurus punctatus female × I. furcatus male) in response to chronic diurnal hypoxia were evaluated in this 197-d study. Sixteen 0.1-ha earthen ponds were stocked with 15,169 hybrid catfish/ha (47 g/fish) and managed to maintain the minimum dissolved oxygen concentration greater than 12%, 24%, 36%, or 48% of saturation. Growth and yield of channel × blue hybrid catfish were significantly related to minimum nightly dissolved oxygen concentration. The cumulative effect of nocturnal dissolved oxygen concentration and the duration of exposure to hypoxia (termed dissolved oxygen minutes) …

Nantucket Shellfish Management Plan, Kristin Uiterwyk, Steve Bliven, Dan Leavitt, Jack Wiggin, Urban Harbors Institute, University Of Massachusetts Boston

Office of Community Partnerships Posters

Nantucket’s shellfish resources are an important part of the Island’s history, culture, and economy. Nantucket waters support one of the country’s last wild-caught bay scallop fisheries. Elsewhere along the Atlantic coast, fishing pressure, habitat loss, and disease have severely depleted bay scallop populations. Although Nantucketers continue to make a living harvesting shellfish from the Island’s waters, many do so with concern for the future of the resources and the habitats that support them. Urban Harbors Institute (UHI) provided technical assistance to the community to develop a Shellfish Management Plan (SMP) that addresses issues of water quality, habitat loss, climate change, …

Table Of Contents April 2012 Agricultural Research Magazine

Agricultural Research Magazine

Table of Contents

4 A Bit of Gold and Nanotechnology Bring Viruses to Light

6 Digital Detectives Decipher Ingredients

8 SERS: High-Tech Tactic May Newly Expose Stealthy Salmonella

10 What’s in Your Blood? The Ongoing Hunt for Metabolites

12 Protein Biomarkers Identify Disease-Carrying Aphids

13 A New Approach to Molecular Plant Breeding

14 Cotton Gets Nanotech and Biotech Treatment in New Orleans

16 Barcoding Insects To Control Them

18 Metagenomics Offers Insight Into Poultry Diseases

20 Longstanding Erosion Calculator Enters 21st Century

23 Locations Featured in This Magazine Issue

Forum: Innovations Through Biotechnology, Jack Okamuro, Kay Simmons

Agricultural Research Magazine

"We need to put a premium on creating innovative solutions to address our current and future problems."- U.S. Department of Agriculture Secretary Tom Vilsack on priorities for the 2012 Farm Bill.

This month in Agricultural Research, we highlight Agricultural Research Service projects grown from seeds planted on what were once the distant horizons of biotechnology- metagenomics, genomic selection, metabolomics, and more.

Each project represents a fusion of leading-edge science and technological innovation that is helping to shape ARS's response to the growing food, fiber, and fuel needs of a U.S. and world population forecasted to exceed 430 million and 9 …

Back Matter Agricultural Research Magazine 60(4): April 2012

Agricultural Research Magazine

U.S. Department of Agriculture

Agricultural Research Magazine

5601 Sunnyside Ave.

Beltsville, MD 20705-5129

Barcoding Insects To Control Them, Dennis O’Brien

Agricultural Research Magazine

Mention barcodes and it often brings to mind the sales tags and scanners found in supermarkets and other stores. But Agricultural Research Service scientists are using “DNA barcodes” in their search for ways to control and monitor insects that pose the greatest threats to crops as diverse as wheat, barley, and potatoes.

In DNA barcoding, scientists sequence a designated part of an organism’s genome and produce a barcode from it for a systematic comparison with the sequenced DNA of other closely related species. DNA barcodes are being developed on a wide range of plants and animals as part of a …

Cotton Gets Nanotech And Biotech, Jan Suszkiw, Brian Condon

Agricultural Research Magazine

Scientists at the Agricultural Research Service’s Cotton Chemistry and Utilization Research Unit (CCUR) in New Orleans, Louisiana, have a long history of research successes leading to advances in the use, manufacturing, and quality of cotton fiber.

For example, groundbreaking studies led by chemist Ruth Benerito at the Cotton Chemical Reactions Laboratory (CCUR’s predecessor), starting in the 1950s, gave rise to easy-care, permanent-press clothing and other consumer-friendly improvements that helped cotton better compete with synthetic fibers, like polyester and nylon.

New challenges and consumer demands have since emerged, but the ARS lab’s tradition of excellence and innovation in research continues.

High-Tech Tactic May Newly Expose Stealthy Salmonella, Marcia Wood, Bosoon Park

Agricultural Research Magazine

At laboratories of the future, even the smallest quantity of Salmonella bacteria may be easily detected with a technology known as “SERS,” short for “surface-enhanced Raman scattering.”

Agricultural engineer Bosoon Park, in the Agricultural Research Service’s Quality and Safety Assessment Research Unit in Athens, Georgia, is leading exploratory studies of this analytical technique’s potential for quick, easy, and reliable detection of Salmonella and other foodborne pathogens.

According to the U.S. Centers for Disease Control and Prevention, Salmonella causes more than 1 million cases of illness in this country every year.

Long-Standing Erosion Calculator, Don Comis, Robert Sowers

Agricultural Research Magazine

Seth Dabney is busy tweaking a soon-to-be-unveiled update of the Revised Universal Soil Loss Equation, Version 2 (RUSLE2), which moves the original equation ever further from its origins in the age of slide rules to the era of computing. Dabney is research leader of the Watershed Physical Processes Research Unit, at the Agricultural Research Service’s National Sedimentation Laboratory in Oxford, Mississippi.

RUSLE2 has retained the integrity of the original Universal Soil Loss Equation (USLE)—in greatly expanded form—and integrated an updated database with a computer model that reflects both the latest in computer technology and scientific discoveries about erosion processes. It …

Digital Detectives Deciper Ingredients, Rosalie Marion Bliss, James M. Harnly, Pei Chen

Agricultural Research Magazine

Television shows featuring crime scene investigators have been keeping viewers intrigued for years. But the Agricultural Research Service’s intriguing “food composition investigators” are just as innovative at deciphering truth from fiction relating to ingredients of plant-based foods and dietary supplements. The researchers are at the ARS Food Composition and Methods Development Laboratory, which is headed by research leader James Harnly. The laboratory is part of the Beltsville [Maryland] Human Nutrition Research Center (BHNRC).

They’re using new equipment and a metabolomics approach to discover compounds and to accurately identify ingredients in foods and supplements. They are also looking at chemical composition …

Protein Biomarkers: Identify Disease-Carrying Aphids, Dennis O’Brien

Agricultural Research Magazine

Aphids can transmit viruses that cause crop diseases and reduce the quality and quantity of fresh foods. Spraying insecticides can control aphids and reduce the spread of viruses, but spraying is expensive and can harm the environment. Additionally, not all aphids transmit viruses. So a key question for growers is knowing when and what to spray to control viral diseases.

Agricultural Research Service scientists Michelle Cilia and Stewart Gray, in the Biological Integrated Pest Management Unit at the Robert W. Holley Center for Agriculture and Health in Ithaca, New York, have found a way to distinguish aphids that spread viruses …

Metagenomics Offers Insight Into Poultry Diseases, Sandra Avant

Agricultural Research Magazine

Less than 10 years ago, the world marveled at the completion of the human genome project, which involved traditional technology to identify all the genes in a single organism—the human. Today, a more powerful technology is being used to detect thousands of organisms in an entire community.

Unlike traditional gene sequencing, the new molecular technique—metagenomics— eliminates the need to cultivate and isolate individual microbial species. Scientists can apply genomic analysis to mixed communities of microbes instead of to just one organism.

For example, researchers examining viral enteric (intestinal) diseases in poultry can take intestinal samples from different poultry flocks. The …

A New Approach Tomolecular Plant Breeding, Dennis O’Brien, Jean-Luc Jannink

Agricultural Research Magazine

An ARS scientist in Ithaca, New York, is using a new statistical approach to help speed the development of improved varieties of crops.

Plant breeders constantly strive to breed new varieties that yield more, resist emerging pests and pathogens, tolerate heat and drought, and grow in marginal soils and environments. Increasingly, molecular tools are used to speed those efforts. By identifying genes associated with desirable traits, scientists don’t have to wait for timeconsuming field observations.

“To grow wheat and evaluate it for traits in the field takes 5 to 9 years. Using genomic data, we can do it in about …

A Bit Of Gold And Nanotechnology, Sandra Avant, William C. Wilson

Agricultural Research Magazine

All that glitters is not gold, but it is in the case of nanotechnology that’s being used to develop detection tools for viruses that affect animals and people. Scientists at the Agricultural Research Service’s Center for Grain and Animal Health Research (CGAHR) in Manhattan, Kansas, and the University of Wyoming are using surface-enhanced Raman scattering (SERS) with gold nanoparticles to design tests that rapidly identify the virus that causes West Nile fever.

The West Nile virus is spread by infected mosquitoesand can cause headaches, fever, and body aches. In some cases, it causes a more serious and sometimes fatal neuroinvasive …

What's In Your Blood? The Ongoing Hunt For Metabolites, Marcia Wood, John W. Newman

Agricultural Research Magazine

At any given time, blood circulating through your body carries thousands of small molecules known as “metabolites.” Medical and nutrition researchers are eager to discover more about these compounds—amino acids, sugars, fats, and more—that are formed in and by our bodies.

Metabolites are of interest because the presence and concentrations of some of them can provide meaningful profiles, sometimes referred to as “metabolic signatures” or “fingerprints.”

In the future, for instance, yourmetabolic fingerprint—detected in a small sample of blood taken for your annual physical examination—might prove to be a reliable indicator of your health and a predictor of certain diseases. …

Locations Featured In This Magazine Issue April 2012

Agricultural Research Magazine

Locations Featured in This Magazine Issue

Davis, California

Stillwater, Oklahoma

Center for Grain and Animal Health Research

Southern Regional Research Center

Oxford, Mississippi

West Lafayette, Indiana

Athens, Georgia

U.S. Vegetable Laboratory

Robert W. Holley Center for Agriculture and Health

Henry A. Wallace Beltsville Agricultural Research Center

Fine-Scale Population Structure And Asymmetrical Dispersal In An Obligate Salt-Marsh Passerine, The Saltmarsh Sparrow (Ammodramus Caudacutus), Jennifer Walsh, Adrienne I. Kovach, Kimberly J. Babbitt, Kathleen M. O'Brien

New Hampshire Agricultural Experiment Station Publications

Understanding the spatial scale of gene flow can yield valuable insight into the ecology of an organism and guide conservation strategies. Fine-scale genetic structure is uncommon in migratory passerines because of their high vagility and presumed high dispersal abilities. Aspects of the behavior and ecology of some migratory species, however, may promote structure on a finer scale in comparison to their mobility. We investigated population genetic structure in the Saltmarsh Sparrow (Ammodramus caudacutus), a migratory passerine that breeds along the northeastern coast of the United States, where it is restricted exclusively to a narrow strip of patchily distributed tidal marsh …

Growing South Dakota (Spring 2012), College Of Agriculture &. Biological Sciences

Growing South Dakota (Publication of the College of Agriculture, Food and Environmental Sciences)

[Page] 2 Powerful Potential: Growing Global Population Spurs Need for Agbioscience
[Page] 4 Spring College News
[Page] 6 Enhanced Education: Students Complement Coursework With Extra-Curricular Opportunities
[Page] 8 Gaining Global Perspective: SDSU Delegation Visits Argentina
[Page] 9 Creative Collaboration: Students, Landowners & Industry Professionals Pair Up for a Positive Experience
[Page] 10 Wondrous Wheat: New Research Agreement & Wheat Varieties Announced
[Page] 12 Here and There
[Page] 14 New Era Underway: SDSU Extension Re-Energizes Programs, Delivery [Page] 16 iGrow Continues to Grow
[Page] 18 Focused on the Future: Field Specialists Strive to Serve Changing Landowner Needs
[Page] 19 Connecting with …

Social Effects On Vocal Ontogeny In An Ungulate, The Goat, Capra Hircus, Elodie F. Briefer, Alan G. Mcelligott

Sentience Collection

Vocal plasticity is the ability of an individual to modify its vocalizations according to its environment. Humans benefit from an extreme form of vocal plasticity, allowing us to produce a wide range of sounds. This capacity to modify sounds has been shown in three bird orders and in a few nonhuman mammal species, all characterized by complex vocal communication systems. In other mammals, there is no evidence for a social impact on vocal development. We investigated whether contact calls were affected by social environment and kinship during early ontogeny in goats, a highly vocal and social species. To test the …

Using Grizzly Bears To Assess Harvest-Ecosystem Tradeoffs In Salmon Fisheries, Taal Levi, Chris T. Darimont, Misty Macduffee, Marc Mangel, Paul C. Paquet, Christopher C. Wilmers

Aquaculture and Fisheries Collection

Implementation of ecosystem-based fisheries management (EBFM) requires a clear conceptual and quantitative framework for assessing how different harvest options can modify benefits to ecosystem and human beneficiaries. We address this social-ecological need for Pacific salmon fisheries, which are economically valuable but intercept much of the annual pulse of nutrient subsidies that salmon provide to terrestrial and aquatic food webs. We used grizzly bears, vectors of salmon nutrients and animals with densities strongly coupled to salmon abundance, as surrogates for ‘‘salmon ecosystem’’ function. Combining salmon biomass and stock-recruitment data with stable isotope analysis, we assess potential tradeoffs between fishery yields and …

The Effect Of Neutering On The Risk Of Urinary Incontinence In Bitches – A Systematic Review, W. Beauvais, J. M. Cardwell, D. C. Brodbelt

Endocrinology Collection

An increased risk of urinary incontinence in bitches has often been associated with previous ovariohysterectomy but remains controversial. The objective of this study was to evaluate the strength of evidence for an association between neutering or age at neutering and urinary incontinence in bitches and to estimate the magnitude of any effect found. A systematic review of peer‐reviewed original English analytic journal articles was conducted, based on Cochrane guidelines (Higgins and Green 2009) Of 1,853 records screened, seven studies were identified that examined the effect of neutering or age at neutering on the risk of urinary incontinence but …

Agricultural Research Magazine April 2012

Agricultural Research Magazine

Tuning In to Technology

Benefits of Biotech,
Computational Tech,
and Nanotech

Creation Of A Natural History Information Database With Mobile Device Access For The Pace Campus In Pleasantville, Joshua J. Schwartz, Martina Blackwood

Cornerstone 3 Reports : Interdisciplinary Informatics

No abstract provided.

A Conceptual Model To Facilitate Amphibian Conservation In The Northern Great Plains, David M. Mushet, Ned H. Euliss Jr., Craig A. Stockwell

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

As pressures on agricultural landscapes to meet worldwide resource needs increase, amphibian populations face numerous threats including habitat destruction, chemical contaminants, disease outbreaks, wetland sedimentation, and synergistic effects of these perturbations. To facilitate conservation planning, we developed a conceptual model depicting elements critical for amphibian conservation in the northern Great Plains. First, we linked upland, wetland, and landscape features to specific ecological attributes. Ecological attributes included adult survival; reproduction and survival to metamorphosis; and successful dispersal and recolonization. Second, we linked ecosystem drivers, ecosystem stressors, and ecological effects of the region to each ecological attribute. Lastly, we summarized information on …

Wetland Hydrodynamics And Long-Term Use Of Spring Migration Areas By Lesser Scaup In Eastern South Dakota, Sharon N. Kahara, Steven R. Chipps

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

Lesser scaup (Aythya affinis [Eyton]) populations remain below their long-term average despite improved habitat conditions along spring migration routes and at breeding grounds. Scaup are typically associated with large, semipermanent wetlands and exhibit regional preferences along migration routes. Identifying consistently used habitats for conservation and restoration is complicated by irregular wetland availability due to the dynamic climate. We modeled long-term wetland use by lesser scaup in eastern South Dakota based on surveys conducted during below-average (1987-1989) and above-average (1993-2002) water condition years. Wetland permanence, longitude, and physiographic region were all significant determinants of use (P < 0.01). Long-term use was best described by a quadratic equation including wetland surface area variability, an index of wetland hydrodynamics that is linked to productivity, biodiversity, and value to waterfowl. Contrary to previous findings, our study shows that over the long term, lesser scaup are more than twice as likely to use permanent wetlands as they are semipermanent wetlands. The northern region of South Dakota's Prairie Coteau, which holds the highest density of hydrologically dynamic permanent wetlands, should be considered an area of conservation concern for lesser scaup. The criteria we identified may be used to identify important lesser scaup habitats in other regions of the Prairie Pothole Region.