Life Sciences Commons^™

Diagnosis And Distribution Of Florida Sand Darter, Ammocrypta Bifascia (Teleostei; Percidae), In The Flint River, Georgia, Camm C. Swift, Gregory R. Moyer, Christine E. Fallon, Brett Albanese

Southeastern Fishes Council Proceedings

Abstract: In 2013, we observed the presence of an undocumented Ammocrypta species in the lower Flint River, Georgia. The occurrence represents the first record of the genus in Georgia. Subsequent surveys at 24 sites, using seining or snorkeling, documented additional specimens from mainstem sites (n = 3) between Albany and Bainbridge and from Ichawaynochaway Creek (n = 5 sites), a large tributary to the Flint River. We used morphological and genetic data to identify specimens to species. Morphological examination included 23 morphometric and 8 meristic characters from fifteen specimens that were compared to specimens from Williams (1975). For genetic analyses, …

Annual Legumes With Greater Water Use Efficiency Can Overcome Seasonal Feed Imbalance, Belinda Hackney, B. Dear, G. Dyce, C. Rodham, G. Li

IGC Proceedings (1977-2023)

No abstract provided.

Productive And Sustainable Pasture Systems: Responding To Climate Variability In The South West Of Australia, Ned Crossley

IGC Proceedings (1977-2023)

No abstract provided.

Performance Of Beef Cattle Females Grazing Under Different Feeding Systems Based On Native Pastures In Southern Brazil, Carlos Nabinger, Teresa C. M. Genro, F. F. Cardoso, M. G. Orqis, M. M. Oliveira, D. P. Montardo

IGC Proceedings (1977-2023)

No abstract provided.

Enzymatic Analysis Of Yeast Cell Wall-Resident Gapdh And Its Secretion, Michael J. Cohen, Brianne Philippe, Peter N. Lipke

Publications and Research

In yeast, many proteins are found in both the cytoplasmic and extracellu- lar compartments, and consequently it can be difficult to distinguish nonconventional secretion from cellular leakage. Therefore, we monitored the extracellular glyceralde- hyde-3-phosphate dehydrogenase (GAPDH) activity of intact cells as a specific marker for nonconventional secretion. Extracellular GAPDH activity was proportional to the number of cells assayed, increased with incubation time, and was dependent on added substrates. Preincubation of intact cells with 100mM dithiothreitol increased the reac- tion rate, consistent with increased access of the enzyme after reduction of cell wall di- sulfide cross-links. Such treatment did not increase …

Surviving Variable Yields And Prices, Kara Zimmerman, Cory Walters, Jessica Groskopf, Matthew Stockton, Kate Brooks

Cornhusker Economics

A marketing strategy focusing on prices from the most re-cent past, indirectly gives little or no weight to all of the other possible price outcomes. While it is intuitive that the most recent prices are more likely to play a role in our decision-making process, there are other price events that can happen. The seasonal price path from the 2019/2020 crop year was nothing like we have recently experienced. Sup-pose we entered the 2020’s marketing decision using a seasonal approach that considers only the average price series over the past 5 years (2015-19 average), Figure 1. The seasonal average indicates …

No-Till Pumpkin And Winter Squash After Winter Rye Cover Crop, Northern Indiana, 2020, Elizabeth Maynard

Midwest Vegetable Trial Reports

No-till planting of pumpkin into a killed winter rye cover crop is a system used by growers in a number of states, including Indiana. Advantages mentioned by producers in addition to soil health benefits from the cover crop include cleaner pumpkins at harvest, and in rainy seasons, less mud in the field making a more pleasant experience for customers who pick pumpkins right from the field. This paper reports on a project to develop a workable no-till system at a university research farm that can be used for demonstration and in future research to better understand and improve production practices. …

Special Topic: Raven Management, Peter S. Coates

Human–Wildlife Interactions

This is the call for papers for the special issue on raven management.

Supporting Farmer Adoption Of Sustainable Bird Management Strategies, Catherine A. Lindell

Human–Wildlife Interactions

Pest birds cause substantial and costly damage to crops. Managing birds is complex because (1) they are highly mobile, (2) they habituate quickly to many deterrents, (3) some species provide benefits to farmers by deterring and consuming pest insects, rodents, and other birds, and (4) birds are highly valued by many people. Thus, farmers have many issues to consider when developing bird management strategies. Here I discuss recent work indicating that farmer adoption of sustainable agricultural practices is more likely when practices are effective, clear guidelines for implementation are available, implementation is relatively easy, and when practices are linked, in …

Simulated Winter Incubation Of Soil With Swine Manure Differentially Affects Multiple Antimicrobial Resistance Elements, Daniel N. Miller, Madison E. Jurgens, Lisa M. Durso, Amy Schmidt

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Gastrointestinal bacteria that harbor antibiotic resistance genes (ARG) become enriched with antibiotic use. Livestock manure application to cropland for soil fertility presents a concern that ARG and bacteria may proliferate and be transported in the environment. In the United States, manure applications typically occur during autumn with slow mineralization until spring planting season. A laboratory soil incubation study was conducted mimicking autumn swine manure application to soils with concentrations of selected ARG monitored during simulated 120-day winter incubation with multiple freeze-thaw events. Additionally, the effects of two soil moistures [10 and 30% water holding capacity (WHC)] and two manure treatments …

Line Of Sight: Simulated Aerial Avian Predators Can Reduce Problematic Bird Flyovers Of Airfields, William O'Shea, Neil E. Coughlan, Thomas C. Kelly, Neil Mitham, Jeremy Nicholson

Human–Wildlife Interactions

Collisions between birds and aircraft (bird strikes) are a serious threat to air safety and represent a substantial economic cost to the global aviation industry. In recent years, the frequency of wood pigeons (Columba palumbus) flying over active runways has increased at airports in Ireland. Here, we examine the effectiveness of imitation hawk-kites as a means of excluding wood pigeons from sensitive airfield locations. Over 2 years, during August and September, we conducted control (no kites deployed) and treatment trials (kites deployed) at Casement Aerodrome, an active airfield of approximately 320 ha in County Dublin, Ireland and on …

Psychological Stress And Cancer: New Evidence Of An Increasingly Strong Link, Rosanna Martinelli

Translational Medicine @ UniSa

To date stress, a highly complex process that disrupts homeostasis and involves environmental and psychosocial factors, is considered as one of the most crucial factor that affects our daily life, especially urban dweller's life.

Clinical and experimental studies widely support the notion that adrenergic stimulation due to chronic stress affects inflammation and metabolism.

In this work, supported by several recent scientific evidences, we show how stress plays a positive role in cancer initiation, progression and cancer metastasis, a negative role for anti-tumor immune function and therapy response.

Understanding the intricacies of this interaction could provide an additional help on how …

Species Distribution Modeling For Arid Adapted Habitat Specialists In Zion National Park, Sam Driver, Daniel R. Unger, David L. Kulhavy, Chris M. Schalk

Student Publications

The Arizona toad (Anaxyrus microscaphus) and Jones’ waxy dogbane (Cycladenia humilis var. jonesii) are habitat specialists with historical ranges in the desert southwest and specifically, Zion National Park (ZION). The machine learning method, MaxEnt, constructed species distribution models (SDMs) in ZION for the two study species at 30 m and 900 m spatial resolutions using climate, topographic, and remotely sensed data. Additionally, 900 m forecasting models were constructed to observe the shifts in suitable habitat for the years 2050 and 2070, based off two representative concentration pathway scenarios. Results indicate promising predictive power for both high …

Inaction On Lead Despite The Relevant Knowledge: Predictors, Covariates, And Outreach Implications, Alessandra Rossi, Bernabas Wolde, Pankaj Lal, Melissa Harclerode

Department of Biology Faculty Scholarship and Creative Works

Testing residential soil and paint for lead provides actionable information. By showing where and how much lead exists on the residence, it allows one to quantify risk and determine the best ways to reduce exposure along with the corresponding health and financial costs. For these reasons, several federal and state programs offer outreach to audiences on the benefits of testing residential soil and paint for lead. Not all individuals who know about lead’s adverse health effects, however, test their residence for lead, potentially limiting the actionable information that could have helped to reduce their exposure. Such individuals represent a challenge …

The Mayfly Newsletter, Donna Giberson

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

Single-Subject Analyses Reveal Altered Performance And Muscle Activation During Vertical Jumping, John R. Harry, Jeffrey D. Eggleston, Janet S. Dufek, C. Roger James

Kinesiology and Nutrition Sciences Faculty Research

Effects of barefoot and minimal footwear conditions on performance during jumping (i.e., jump displacement) are unclear with traditional group-level studies because of intra- and interindividual variability. We compared barefoot, minimal, and conventional athletic footwear conditions relative to countermovement vertical jump (CMVJ) performance and muscle activation using a single-subject approach. Fifteen men (1.8 ± 0.6 m; 84.5 ± 8.5 kg; 23.8 ± 2.3 y) performed three CMVJ trials in barefoot, minimal, and conventional footwear conditions while ground reaction forces (GRF) and electromyograms of eight lower extremity muscles were recorded. The Model Statistic procedure (α = 0.05) compared conditions for CMVJ displacement, …

Outlier Concepts Auditing Methodology For A Large Family Of Biomedical Ontologies, Ling Zheng, Hua Min, Yan Chen, Vipina Keloth, James Geller, Yehoshua Perl, George Hripcsak

Publications and Research

Background: Summarization networks are compact summaries of ontologies. The “Big Picture” view offered by summarization networks enables to identify sets of concepts that are more likely to have errors than control concepts. For ontologies that have outgoing lateral relationships, we have developed the "partial-area taxonomy" summarization network. Prior research has identified one kind of outlier concepts, concepts of small partials-areas within partial-area taxonomies. Previously we have shown that the small partial-area technique works successfully for four ontologies (or their hierarchies).

Methods: To improve the Quality Assurance (QA) scalability, a family-based QA framework, where one QA technique is potentially applicable to …

Missing Lateral Relationships In Top‑Level Concepts Of An Ontology, Ling Zheng, Yan Chen, Hua Min, P. Lloyd Hildebrand, Hao Liu, Michael Halper, James Geller, Sherri De Coronado, Yehoshua Perl

Publications and Research

Background: Ontologies house various kinds of domain knowledge in formal structures, primarily in the form of concepts and the associative relationships between them. Ontologies have become integral components of many health information processing environments. Hence, quality assurance of the conceptual content of any ontology is critical. Relationships are foundational to the definition of concepts. Missing relationship errors (i.e., unintended omissions of important definitional relationships) can have a deleterious effect on the quality of an ontology. An abstraction network is a structure that overlays an ontology and provides an alternate, summarization view of its contents. One kind of abstraction network is …

Extending Import Detection Algorithms For Concept Import From Two To Three Biomedical Terminologies, Vipina K. Keloth, James Geller, Yan Chen, Julia Xu

Publications and Research

Background: While enrichment of terminologies can be achieved in different ways, filling gaps in the IS-A hierarchy backbone of a terminology appears especially promising. To avoid difficult manual inspection, we started a research program in 2014, investigating terminology densities, where the comparison of terminologies leads to the algorithmic discovery of potentially missing concepts in a target terminology. While candidate concepts have to be approved for import by an expert, the human effort is greatly reduced by algorithmic generation of candidates. In previous studies, a single source terminology was used with one target terminology.

Methods: In this paper, we are extending …

Single-Fluorophore Sensors For Mechanical Force In Living Cells, Sarah Kricheff

Honors Scholar Theses

Mechanotransduction is the process by which a mechanical stimulus is converted to a cellular signal. This process is heavily influential of cell morphology, differentiation, and behavior. However, altered levels of mechanical stimuli are also found in many pathological contexts. For example, cancerous cells have stiffer surrounding tissue than healthy cells, and research suggests that this alters cell behavior and promotes metastasis. Despite these findings, the cellular processes behind these signaling alterations remain widely unknown. Understanding these cascades is critical, as involved proteins can give us a deeper understanding of the role of mechanotransduction, and certain proteins can potentially be targeted …

The Genetic Influence On Subjective Well-Being: A Review Of The Current Knowledge On The Role Of Genetics On Our Sense Of Subjective Well-Being And The Implications It Has For Future Research In Improving Well-Being At Both A Population And Individual Level., Abhishek Gupta

Honors Scholar Theses

This thesis project explores the genetic underpinnings of one of the most cherished attributes in the world, well-being.¹ Specifically, it attempts to understand the influence of the genome on subjective, or experienced, well-being. An investigation was conducted into current literature concerning both the structure of measurement devices of well-being as well as association studies to determine the scope of the correlation that exists between the genome and well-being and identify genetic findings of interest. Ultimately, being able to provide evidence of causality between the genome and sense of well-being at this iteration of well-being and genome research is limited, …

Understanding Free-Roaming Horse Conflicts With Wildlife In The Great Basin, S. Nicole Frey, Eric Thacker, Katlyn Uhart

All Current Publications

Horses and burros were introduced to North America in the 1600s with European missionaries and explorers. Over time, abandoned and released horses and burros formed herds and by the time European-American settlers began to explore North America in the 1700s, these free-roaming horses and burros had adapted to their habitat and been incorporated into Native American culture. By the mid-1900s, most Americans considered these horses as wild and symbols of freedom and beauty.

In 1971, Congress passed the Wild and Free-Roaming Horses and Burros Act (Public Law 73-482) to provide federal protection for free-roaming horses and burros (also known as …

K2p2.1 (Trek-1) Potassium Channel Activation Protects Against Hyperoxia-Induced Lung Injury, Tatiana Zyrianova, Benjamin Lopez, Riccardo Olcese, John Belperio, Christopher M. Waters, Leanne Wong, Victoria Nguyen, Sriharsha Talapaneni, Andreas Schwingshackl

Physiology Faculty Publications

No targeted therapies exist to counteract Hyperoxia (HO)-induced Acute Lung Injury (HALI). We previously found that HO downregulates alveolar K_2P2.1 (TREK-1) K⁺ channels, which results in worsening lung injury. This decrease in TREK-1 levels leaves a subset of channels amendable to pharmacological intervention. Therefore, we hypothesized that TREK-1 activation protects against HALI. We treated HO-exposed mice and primary alveolar epithelial cells (AECs) with the novel TREK-1 activators ML335 and BL1249, and quantified physiological, histological, and biochemical lung injury markers. We determined the effects of these drugs on epithelial TREK-1 currents, plasma membrane potential (Em), and intracellular Ca …

Emerald Ash Borer Specific Gene Silencing Has No Effect On Non-Target Organisms, Flavia Pampolini, Lynne K. Rieske

Entomology Faculty Publications

The sequence complementarity of the RNA interference (RNAi) pathway allows for targeted suppression of genes essential for insect survival, and enables development of pest management strategies specific to a given species while reducing the likelihood of adversely impacting non-target organisms (NTOs). The feasibility of manipulating the RNAi pathway to cause mortality in the highly invasive emerald ash borer (EAB) has been demonstrated. Here the spectrum of activity of three double stranded RNAs (dsRNAs) targeting the genes hsp, shi, and sn-rnp in EAB was evaluated in model insects representing five functional guilds including herbivore, predator, detritivore, pollinator, parasitoid; …

The Decision Maker: Understanding The Role Of Ifrd1 In Urothelial Plasticity And Regeneration, Bisiayo Erionmwon Fashemi

Arts & Sciences Graduate Student Theses and Dissertations

The bladder urothelium forms a highly specialized watertight barrier to urinary wastes. The urothelium offers an unusual example of tissue regeneration: although urothelial cells do not rapidly turn over under physiological conditions, they have an impressive capacity to regenerate tissue upon injury. Even more remarkable, depending on the modality of injury (sterile, infectious) there appear to be two distinctive modes of urothelial regeneration. We have previously shown that in response to a urinary tract infection (UTI), the urothelial stem cell niche becomes activated and induces rapid restoration of the urothelium, whereas, regeneration following sterile injury does not involve stem cell …

The Effect Of Holding Time Of Whole Mare Blood On Concentration Of Progesterone, Clarissa Menefee

Electronic Theses and Dissertations

The objective of this study was to evaluate if holding time had an effect on mare whole blood progesterone levels. This research was completed using 12 mares, with blood being collected on multiple cycles to get a total of 28 separate blood collections. At each collection 5 vials of blood were taken for different time treatments of 0, 12, 24, and 48 hours. The 0 hour was centrifuged within 30 mins of collection and the other 4 were refrigerated at 4℃ until the specific time treatment was finished. After they were centrifuged all the samples were stored in the freezer …

Species Distribution Modeling For Arid Adapted Habitat Specialists In Zion National Park, Sam Driver, Chris M. Schalk, Daniel Unger, David Kulhavy

Electronic Theses and Dissertations

The Arizona toad (Anaxyrus microscaphus) and Jones’ waxy dogbane (Cycladenia humilis var. jonesii) are habitat specialists with historical ranges in the desert southwest and specifically, Zion National Park (ZION). The machine learning method, MaxEnt, constructed species distribution models (SDMs) in ZION for the two study species at 30 m and 900 m spatial resolutions using climate, topographic, and remotely sensed data. Additionally, 900 m forecasting models were constructed to observe the shifts in suitable habitat for the years 2050 and 2070, based off two representative concentration pathway scenarios. Results indicate promising predictive power for both high …

Advances In The Understanding Of Auxin Signaling Through Indirect Mechanisms, Ryan Joseph Emenecker

Arts & Sciences Graduate Student Theses and Dissertations

The plant hormone auxin is remarkable in its capacity to seemingly regulate all plant growth and developmental processes. Because of this, plants have evolved numerous mechanisms to allow for specific responses to auxin dependent on tissue type and developmental stage. Despite the importance of this specificity, we understand very little with respect to the molecular mechanisms underlying it. In this work, we examine two mechanisms used by plants to modulate auxin response across different tissues. First, we describe our finding that auxin interactions with another plant hormone, abscisic acid, is used as a mechanism to regulate auxin responsiveness in the …

Structural Insights Into Host-Pathogen Interactions Of Alphaviruses, Katherine Basore

Arts & Sciences Graduate Student Theses and Dissertations

Alphaviruses are arthropod-borne, single-stranded positive-sense RNA viruses of the Togaviridae family that infect various vertebrates worldwide in tropical and temperate areas, causing emerging and reemerging diseases in humans. Mature virions are 70 nm in diameter and contain a ~11-kilobase genome encapsidated within a nucleocapsid core, a host-derived lipid bilayer, and an envelope comprised of heterodimers of the glycoproteins E1 and E2 arranged into trimeric spikes with T=4 icosahedral symmetry. Alphaviruses are categorized into two groups based on their clinical symptoms: the arthritogenic alphaviruses, such as chikungunya (CHIKV), Mayaro (MAYV), Ross River (RRV), Semliki Forest (SFV), and O’nyong-nyong (ONNV) viruses, which …

A Test Of Grazing Experimental Design And Grazing Effects In A Mixed Grassland Ecosystem, Xiaohui Yang, Xulin Guo

IGC Proceedings (1977-2023)

No abstract provided.