Life Sciences Commons^™

Hear Me Roar, Abigail R. Seethoff

Graduate Student Theses, Dissertations, & Professional Papers

Hear Me Roar, a compilation of personal essays interspersed with short forms, grapples with the nuances of compliance versus autonomy in the context of the male gaze, beauty standards, and pop culture. The collection also explores what it means to treasure something—another person, an object—and how to express and deepen that affection.

Digitized Galapagos Tortoise Whaling Data From 1831-1868, Cyler Norman Conrad, Noah Garwood, James P. Gibbs

Anthropology Datasets

This repository includes a spreadsheet of digitized Galapagos tortoise count data originally transcribed from whaling and sealing logbooks by Charles H. Townsend and published in 1925. Notes are included which describe how the counts were digitized. Data published in Townsend (1925) and digitized here are presented in: Conrad, C. and Gibbs, J.P. (in preparation). Chapter 4: The Era of Exploitation: 1535-1959. In Galapagos Giant Tortoises, Gibbs, James P., Linda J. Cayot and Wacho Tapia (eds.). Elsevier.

The Ability Of Fragmented Kelp Forests To Mitigate Ocean Acidification And The Effects Of Seasonal Upwelling On Kelp-Purple Sea Urchin Interactions, Kindall A. Murie

Cal Poly Humboldt theses and projects

Bull kelp (Nereocystis leutkeana) forests along the coast for northern California have decreased dramatically as a result of a ‘perfect storm’ of multiple environmental stressors. The disappearance of a predatory sea star and subsequent increase in purple sea urchins (Strongylocentrotus purpuratus) and the recurrence of marine heat waves have caused these once diverse ecosystems to be rapidly converted into relative species-depauperate urchin barrens. By examining the interactive effects of both a rapidly changing abiotic environment and the increase in urchin grazing pressure that is affecting this vital ecosystem, we can better understand its ultimate fate and …

Apparent Survival Of Snowy Plovers Varies Across Years And Between Sexes In Coastal Northern California, Justin A. Windsor

Cal Poly Humboldt theses and projects

Adult survival is one of the most influential vital rates affecting population growth of iteroparous organisms. Survival often varies annually due to environmental stochasticity. However, drastic variations in annual adult survival rates can have overwhelmingly negative impacts on population viability and growth. In many wild avian populations, adult survival varies between sexes and may owe to unequal risks associated with reproductive roles or predation; this is particularly true among shorebirds. I used mark-resight data from a 19-year study of Western Snowy Plovers (Charadrius nivosus nivosus) in coastal northern California to investigate sex-specific apparent survival of the adult population …

Impacts Of Ocean Acidification On Intertidal Macroalgae And Algivore Preference, Andrea Michelle Fieber

Cal Poly Humboldt theses and projects

Ocean acidification, a facet of global climate change, has the potential to induce changes in marine macroalgae that modify their existing interactions with algivorous invertebrates. In this study, I examined the effects of elevated carbon dioxide (pCO₂) on several species of intertidal macroalgae (Phaeophyta, Rhodophyta) and evaluated the present-day and predicted future preferences of algivores (Pugettia producta and Tegula funebralis) by assessing grazing rates on untreated algal tissue and on algae exposed to high-pCO₂ seawater. Both red and brown algae grew faster in elevated pCO₂ than in ambient seawater, …

Phylogenetic And Population Genetic Analysis Of The Humboldt's Flying Squirrel Using High-Throughput Sequencing Data, Stella Chi Yuan

Cal Poly Humboldt theses and projects

The intraspecific genetic variation and diversity within the Humboldt’s flying squirrel (Glaucomys oregonensis) has not yet been characterized despite its elevation to full species in 2017. The San Bernardino flying squirrel (G. o. californicus) is thought to be the southernmost population of G. oregonensis and is restricted to the San Bernardino and San Jacinto Mountains in California, but recent surveys indicate they have been extirpated from the latter locality. In order to provide baseline genetic data across the geographic range of G. oregonensis, I had the following objectives: 1) investigate the intraspecific molecular variation in …

Micronutrient Supplementation In Relation To Hair Loss Syndrome In California Mule Deer, Max W. Marquez

Cal Poly Humboldt theses and projects

The Jawbone deer herd has been monitored on their wintering grounds since the 1950s and recently began decreasing over the last several years. The decline prompted an investigation into the reasons why. Coinciding with the population decline is the appearance of hair loss syndrome and two species of exotic lice. In order to evaluate the effects of hair loss syndrome and the influence of exotic lice infestation, 38 wild does from the herd were used in a modified-before-after-control-impact study. Does were treated with micronutrients selenium and copper via boluses in winter (December 2013-January 2014). Selenium treatment, at a dose of …

Habitat Use And Prey Selection By Mountain Lions In An Altered Sagebrush Steppe Environment, Jonathan Ewanyk

Cal Poly Humboldt theses and projects

Throughout the American West there is an increasing trend of encroachment of woody vegetation on previously open sagebrush steppe habitat. The Modoc Plateau in northeastern California has not been excluded from this encroachment trend and has seen an increase in western juniper (Juniperus occidentalis) densities, likely as a result of long-term fire suppression. Mountain lions (Puma concolor) have not previously been studied on the Modoc Plateau, and there is potential for an increase in cover due to juniper encroachment to benefit the hunting behavior of lions. To better understand if the presence of cover is being …

Estimates Of Calf Survival And Factors Influencing Roosevelt Elk Mortality In Northwestern California, Erin Nigon

Cal Poly Humboldt theses and projects

Survival of juvenile ungulates is known to be highly variable, yet it is fundamental to understanding the dynamics and trends of wildlife populations. Factors influencing calf survival are poorly understood in northwestern California where Roosevelt elk (Cervus canadensis roosevelti) are known to exist. The objectives of this study were 1) to estimate summer and annual survival rates and determine recruitment rates for Roosevelt elk calves in the area, 2) to evaluate differences in calf survival by examining the effects of individual and population level covariates on summer and annual calf survival, 3) to identify factors influencing the timing …

Exploring The Origins Of Secondary Growth – Two Lower Devonian (Emsian) Euphyllophytes From Gaspé, Canada, And Their Implications For The Evolution Of Secondary Growth, Kelly C. Pfeiler

Cal Poly Humboldt theses and projects

Secondary growth from a vascular cambium has a deep fossil record among euphyllophytes, with the earliest occurrence dated to 407 Ma. To date, Armoricaphyton and Franhueberia represent the only instances of secondary growth formally documented in the Early Devonian. Secondary growth diversified rapidly and was present in all major euphyllophyte lineages by the Middle Devonian. Here, I describe two new Early Devonian euphyllophytes exhibiting secondary growth, from the Emsian (c. 400-395 Ma) Battery Point Formation (Québec, Canada): Gmujij tetraxylopteroides gen. et sp. nov. and Perplexa praestigians gen et sp. nov. Both these plants possess mesarch actinosteles with Psilophyton-type …

The Rattle Call: A Female-Specific Vocalization In Steller's Jays, Kachina L. Rowland

Cal Poly Humboldt theses and projects

While the elaborate songs of male passerines are well documented for their role in intrasexual resource competition and mate attraction, vocalizations used in female competition are poorly understood. Research has suggested that the female-specific rattle call of Steller’s jays (Cyanocitta stelleri) is used in competition for access to a territory and mate. I describe structural properties of the rattle call, and compare life history traits of individual females to rattle call occurrence. I used two rates to quantify rattle call occurrence from 20 females: rattles per observation period (RPO), and proportion of observations with a rattle call (POR) …

Aspen Growth Response In The Presence Of Inter-Annual Climate Fluctuation And Disturbance In The Lake Tahoe Basin, Keath K. Sakihara

Cal Poly Humboldt theses and projects

In the western US, aspen forests tend to be small and rare, but have great ecological importance. There is much interest and concern over how aspen in the Sierra Nevada Mountains of the western USA will respond to a changing climate and future disturbances. Impacts from climate change create stress on aspen trees that further compound threats to aspen communities. This analysis assessed the radial growth response of aspen under previously recorded climate conditions to better understand how measurable climate variables affect aspen growth. Along with aspen’s growth response to climate, this analysis also assessed the growth response of aspen …

Knemidokoptes Mites And Their Effects On The Gripping Position Of Steller’S Jay Feet, Wade M. Burris

Cal Poly Humboldt theses and projects

Steller’s jays (Cyanocitta stelleri) with swollen legs and feet resembling the signs of scaly leg have been commonly seen around Arcata, California, USA. These signs are thought to be caused by knemidokoptic mites, a group of parasites specialized at exploiting a range of avian hosts. I compared the gripping position in the feet of jays with variable signs of this condition as an index of their ability to perch, confirmed the presence of mites and identified them to the nearest species using genetic analysis, and compared the relatedness of the cytochrome oxidase subunit I (COI) gene between mites …

The Effects Of Woody Vegetation Encroachment And Removal Within A Coastal Fen, Joseph Saler

Cal Poly Humboldt theses and projects

Early successional wetland habitat is being lost in temperate regions worldwide as a result of changes in disturbance regimes that allow for the establishment and dominance of woody species. In particular, this phenomenon is pronounced in fens, which harbor high numbers of rare herbaceous species that require early successional habitat. I investigated the relationship between woody vegetation encroachment and herbaceous species diversity within a Northern California coastal fen that has been undergoing encroachment by woody vegetation for ca. 80 years by recording species richness and cover data from 338 permanent plots throughout the fen. I also investigated the effect of …

Alternative Water Sources In Western Conifers Via Foliar Uptake And Hydraulic Redistribution, Ariel Sol Weisgrau

Cal Poly Humboldt theses and projects

Water is often the most limiting resource in a plant’s environment. Plants that can maximize their ability to acquire water improve their chances of success. Outside of the traditional soil-plant-atmosphere continuum, plants can alternatively acquire water via foliar uptake of water and hydraulic redistribution (HR) of deep water. This study used greenhouse-based experiments to investigate water use and physiology in four conifer species native to the western U.S.: Picea sitchensis (Bong.) Carriére (PISI), Pseudotsuga menziesii (Mirb.) Franco (PSME), Sequoia sempervirens (D. Don) Endl. (SESE), and Thuja plicata Donn ex. D. Don (THPL). First, this work investigated the capacity for foliar …

The Effect Of Shade Tree Species On Bird Communities In Central Kenyan Coffee Farms, Deven Kammerichs-Berke

Cal Poly Humboldt theses and projects

Shade coffee has been recognized as a well-studied example of a land-sharing management strategy that both creates habitat for tropical birds while also maintaining agricultural yield. Despite the general consensus that shade coffee is more “bird-friendly” than a sun coffee monoculture, little work has been done to investigate the effects of specific shade tree species on bird diversity and their capacity to help deliver ecosystem services. Previous studies in temperate regions have demonstrated that due to shared evolutionary histories, native plant species are better at promoting native arthropod numbers, which in turn support a greater number of birds. This study …

Transforming Agriculture In The Pilbara: Processing Airborne Electromagnetic (Aem) Data, Aaron C. Davis, Mike Donn, John A. Simons, Christopher Schelfhout Dr, Olga Barron

Natural resources commissioned reports

This report focusses on pre-processing, inversion, and post-processing of airborne electromagnetic (AEM) data from a SkyTEM 312M helicopter-borne time-domain AEM survey conducted north of Newman, Western Australia in October and November 2019. Flight lines for the survey were chosen to trend east-west at 400 m line-spacing in order to produce gridded products at 100 m by 100 m resolution. The line directions were chosen in order to best intersect the Fortescue River Fault which separates the Wittenoom Formation from the Pinjian Chert Formation and Manganese Group, and to map the distribution of transported materials in the alluvial fan north of …

Weather Information Needs Of Displaced Artisanal Fishermen In Bakassi Pennisula Nigeria, Friday O. Idiku, Kalu Iroha Ogbonna, Patrick Ogar Ogar, Goodness Mosiokpahe David

Library Philosophy and Practice (e-journal)

Abstract

Information on weather forecast is necessary to guide fishermen on their fishing adventure. The purpose of this study was assessed the weather information needs of displaced fishermen in Bakassi Pennisula, Nigeria. This study was conducted in Bakassi which is a peninsula on the Gulf of Guinea that lies between latitudes 4°25′ and 5°10′N and longitudes 8°20′ and 9°08′E. It has an area of 665 km² (257 sq mi) with displaced Fishermen settling in the area who were the main respondents. It was a descriptive study. One hundred and five (105) displaced fishermen were randomly selected as respondents using snowball …

Menopause-Specific Quality Of Life Among Emirati Women, Linda Smail, Ghufran Jassim, Anam Shakil

All Works

© 2019 by the authors. Licensee MDPI, Basel, Switzerland. To investigate the quality of life (QOL) of menopausal Emirati women aged 40–64 years and determine its relationship with their sociodemographic characteristics. A community-based cross-sectional study was conducted on 70 Emirati women using multistage stratified clustered random sampling. The participants were interviewed face-to-face using a structured questionnaire comprising sociodemographic variables, reproductive characteristics, and the Menopause-Specific Quality of Life (MENQOL) questionnaire. The most common symptom among the study participants was ‘aching in the muscles’. The participants had a moderate level of bothersome symptoms; in addition, vasomotor symptoms were reported by 61%, while …

An Investigation Into The Spatial Distribution, Habitat Selection And Resource Usage Of The Red Fox (Vulpes Vulpes) Inhabiting Urban Reserves Within Perth, Western Australia, Michael Thomas Main

Theses: Doctorates and Masters

I attempted to track a population of urban foxes in Kings Park, but due to collar failure, only one collar was retrieved. The GPS telemetry data from this fox produced home range estimates for minimum convex polygon (MCP) and kernel density (KD) of 0.302 km² and 0.331 km², respectively. The fox was predominantly active at night, with a ten-fold increase in movement during nocturnal periods when compared to daytime movements. Roads and man-made tracks were important for facilitating movement of the fox through its home range, with almost 97% of location fixes recorded within 100m of these features. The fox …

Therapeutic Dna: Delivery And As A Delivery Vehicle, Natalie J. Holl

Masters Theses

"A review of gene delivery methods and gene editing methods, as well as original research utilizing DNA as a delivery vehicle is presented in the following thesis. Thousands of diseases have been linked to genes. Gene therapy, either delivering therapeutic genes or editing DNA bases, has arisen as a treatment option with the potential to cure diseases, rather than just ease symptoms. Genes and editing tools need to be delivered to cells for these therapies to be effective and many techniques have been developed to address the issue of delivery. Nonviral and viral methods have been used to deliver nucleic …

Evaluation Of The Symbiotic Relation Between Endophyte And Poplar Trees Exposed To Landfill Leachate, Catalina Vega Hurtado

Masters Theses

“The contamination of soil and groundwater from leachate leakage from landfill has turned, nowadays, into a global public issue. One of the main concerns about this pollutant is the potential threat to human and ecosystem health. The current research studied endophyte bacteria in association with poplar trees (Populus sp.), as a method of bioremediation of landfill leachates. The objective of the project was to identify treatment strategies that may improve plant performance (survival rates, plant fitness, and degradation efficacy) with the purpose of being implemented in phytoremediation plots, aimed to intercept and treat landfill leachate, before the contamination of watershed. …

Link Between Energy Investment In Biosynthesis And Cellular Resistance To Oxidative Insult: Test The Cost-Quality Hypothesis In Insects, Taiwo Bolanle Iromini

Masters Theses

“The metabolic cost of growth is the amount of energy invested to fuel the anabolic biochemical reactions of biosynthesis. It has been implicated in the efficiency of farm animals and fishes, thus, increased economic profit. The metabolic cost of growth in the cockroach nymph was reported to be 20-fold higher than that of the painted lady butterfly caterpillar. The cost-quality hypothesis was proposed to explain the extremely low biosynthesis energy cost in painted lady caterpillar when physiological and ecological processes the metabolic growth cost was attributed to could not. In this study, the cost-quality hypothesis was tested.

Midgut cells were …

Temperate Eurasian Origins Of Hawaiian Chenopodium (Amaranthaceae) Plus Description Of A New Species Endemic To Moloka‘I, Jason T. Cantley, Angela J. Mcdonnell, J Branson, S R. Long, W Garnett, Christopher T. Martine

Faculty Journal Articles

Chenopodium taxa of Hawai‘i are tetraploids distinguished from other members of the circumglobally distributed genus by minute morphological characters. Because of these reasons, the geographic origin of Hawaiian Chenopodium has remained unclear. Across the Hawaiian Archipelago, Chenopodium taxa are morphologically variable and grow in highly disparate xeric habitats, especially in terms of precipitation, temperature, wind, salt spray, and solar irradiation. Habitats include dry subalpine shrublands, sandy beach strand of atolls in the Northwest Hawaiian Islands, dry forests, and precipitously tall sea cliffs of northwestern Moloka‘i. From the Moloka‘i sea cliffs, which are battered by high energy winds, salt spray, and …

Comparing Water Quality For Aquaponics Systems With Different Solids Removal Methods And Biofilter Media, And Effluent Output To Grow Beds, John W. Cutt, Heather M. Joesting, Brigette A. Brinton

Honors College Theses

Aquaponics is a closed-loop, sustainable method of food production that combines fish and plant production. This method of agriculture has the potential to bring fresh, local food to food-insecure areas, but challenges remain due to high operating costs. In order to develop a strong aquaponics industry, the creation of the most efficient system designs will be critical in optimizing production. This study’s purpose was to compare water quality between two aquaponics system designs that differ in filtration and solid removal methods. System 1 used a sock filter for solid removal and Kaldnes media for biofiltration while System 2 used a …

Discovery And Optimization Of Anti-Cancer Properties Of Traditional Herbal Medicines Using Zebrafish-Human Tumor Xenografts, Ashleigh M. Solheim

Honors College Theses

Cancer is one of the most well-known diseases around the world. It hurts everyone in some way, whether they have it themselves or they know someone that is diagnosed. But the problem is not just this brutal disease, the problem is its invasive treatments. The most common treatments for cancer have harmful and painful side-effects that occur in most cases. As a solution to invasive cancer treatments, this experiment is testing herbal medications Neem, Nilavembu, Ashwagandha and Tulsi as potential nontoxic cancer treatments. First, the maximum tolerable dosage for each herbal agent was found. This dosage was used for the …

The Combined Effects Of Chemicals Used In Textile Processing On Plankton Communities., Diana Wilson

Honors College Theses

Industrial discharge, such as textile effluent, is a major source of chemical mixtures to surface waters. The effects of these mixtures on interacting aquatic organisms can be difficult to predict. We hypothesized that individual chemical effects on phytoplankton and a zooplankton grazer are altered by the presence of other chemicals in mixtures. Microcosms containing a phytoplankton food source (Chlorella sp.) and a zooplankton grazer (Daphnia magna) were exposed to THPC, ammonium, and hydrogen peroxide in a fully crossed design in a greenhouse for one week. Phytoplankton abundance was quantified and zooplankton response was measured as mortality and …

Wild Geranium, Geranium Maculatum, 2020 Virginia Wildflower Of The Year, W. John Hayden

Biology Faculty Publications

Geranium maculatum was named by Linnaeus in his monumental Species Plantarum, published in1753. Geranium has long served as the type genus of Geraniaceae. The genus and family name are derived from the Greek word geranos, crane, in reference to the elongate fruiting styles common throughout the family. English common names like Cranesbill and Storksbill for relatives of Wild Geranium similarly refer to their elongate fruiting-stage styles. The species portion of the binomial, maculatum, means spotted, perhaps a reference to slight irregularities in petal pigmentation sometimes observed in this species.

Examining The Effectiveness Of A Nutrition Education Intervention For Hispanic Participants, Ginnefer O. Cox, Britt Rotberg, Melanie K. Ng, Sarah T. Henes, Silvia Q. Giraudo

Journal of the Georgia Public Health Association

Background: The Expanded Food and Nutrition Education Program (EFNEP) Food Talk nutrition education curriculum in the state of Georgia was specifically tailored towards Hispanic EFNEP participants in order to test the effectiveness of the intervention in the Hispanic population.

Methods: 455 Hispanic EFNEP individuals ages 18-61 in the state of Georgia participated in the data collection. Measures collected include a 24 hour diet recall, and a food behavior checklist to compare consumption and food behavior practices both before and after nutrition education intervention.

Results: Measurable objectives of the study include statistically significant (p<.001) in fruit, vegetable and milk consumption and consumption of fruits, vegetables and milk group foods closer to the recommended levels of USDA MyPlate guidelines for the nutrition education intervention group. Results also showed statistically significant (p<.0001) improvements in nutrition-related behaviors.

Conclusion: This study supports a nutrition intervention …

Innovating Federalism In The Life Sciences, Myrisha S. Lewis

Faculty Publications

This Article challenges the view that the US. Food and Drug Administration (FDA) has exclusive Jurisdiction over life sciences innovations. Many current and forthcoming life sciences innovations are "innovative therapies" such as gene editing, gene therapy, and regenerative stem cell treatments, which are actually "hybrids" of state and federal Jurisdiction. Thus, both state and federal Jurisdiction coexist: federal Jurisdiction exists to the extent that these medical innovations use drugs or biologics, but state Jurisdiction exists to the extent that these innovations are procedures regulated by states as the practice of medicine.

This Article argues that the regulation of numerous current …