Life Sciences Commons^™

Investigating The Tolerance Response Of Early Vegetative Stage Soybeans To Aphis Glycines Matsumura, Lia Da Silva Marchi

Department of Entomology: Dissertations, Theses, and Student Research

The objectives of this research were to evaluate the impact of soybean aphid (Aphis glycines Matsumura) feeding on the yield response of V1, V3, and R1 KS4202 soybean plants and examine the effect of soybean aphid feeding on peroxidase activity in V1 and V3 KS4202 plants. KS4202 plants infested during the early vegetative stages (VC, VE and V1) were identified as highly susceptible based upon plant damage and stunting of the plants. In contrast, V3, V4, and V5 stage KS4202 soybeans were classified as moderately resistant. In the yield response study, V1, V3 and R1 plants had aphid numbers …

Evidence Of Transmission Of Escherichia Coli O157:H7 To The Tissues Or Phyllo-Plane Of Wheat, From Contaminated Soil, Seeds Or Water, Bismarck Antonio Martinez

Department of Food Science and Technology: Dissertations, Theses, and Student Research

Escherichia coli O157:H7 is a human pathogen that can cause a wide spectrum of disease symptoms, such as bloody diarrhea, hemorrhagic colitis, and hemolytic uremic syndrome (HUS). Escherichia coli O157:H7 illness are mainly associated with undercooked beef; however, in recent years outbreaks have been linked to fresh produce such as spinach, lettuce, and sprouts. In 2009, flour was implicated as a contamination source in the consumption of raw cookie dough resulting in 77 illness-cases. The objective of this research was to determine the possible route of transmission of E. coli O157:H7 into the phyllo-plane of wheat using contaminated seed, soil …

Microfabrication, Characterization, And Application Of Carbon Nanotube Templated Thin Layer Chromatography Plates, And Functionalization Of Porous Graphitic Carbon, David S. Jensen

Theses and Dissertations

This dissertation contains the following sections. Chapter 1 contains a detailed description of the theory of thin layer chromatography (TLC). Chapter 2 describes the benefits and practical considerations of elevated temperatures in liquid chromatography (LC). The porous graphitic carbon (PGC) I modified as part of my work is often used in elevated temperature LC. Chapter 3 shows a thermodynamic analysis of chromatographic retention at elevated temperature, and Chapter 4 contains a closer look at the van 't Hoff equation in LC and how it can be used in retention modeling. In Chapter 5, I describe a new procedure for microfabricating …

Secondary Contact And Admixture Between Independently Invading Populations Of The Western Corn Rootworm, Diabrotica Virgifera Virgifera In Europe, Gérald Bermond, Marc Ciosi, Eric Lombaert, Aurélie Blin, Marco Boriani, Lorenzo Furlan, Stefan Toepfer, Thomas Guillemaud

All Peer-Reviewed Publications

The western corn rootworm, Diabrotica virgifera virgifera (Coleoptera: Chrysomelidae), is one of the most destructive pests of corn in North America and is currently invading Europe. The two major invasive outbreaks of rootworm in Europe have occurred, in North-West Italy and in Central and South-Eastern Europe. These two outbreaks originated from independent introductions from North America. Secondary contact probably occurred in North Italy between these two outbreaks, in 2008. We used 13 microsatellite markers to conduct a population genetics study, to demonstrate that this geographic contact resulted in a zone of admixture in the Italian region of Veneto. We show …

Allogeneic Stem Cell Transplantation In Acute Myeloid Leukemia, Natasha Bahadur Ali, Salman Adil, Mohammad Usman Shaikh, Nehal Masood

Department of Pathology and Laboratory Medicine

We report a case series of 12 patients with acute myeloid leukemia who underwent allogeneic stem cell transplant with a matched related donor. Male to female ratio was 1:1. The main complication post-transplant was graft-versus-host disease (n=7 patients). Transplant-related mortality involved one patient; cause of death was multi-organ failure. After a median follow up of 36.0±11.3 months, overall survival was 16%.

Status Gizi Ibu Hamil Dan Penyakit Tidak Menular Pada Dewasa, Endang Laksmining Achadi, Kusharisupeni Kusharisupeni, Atmarita Atmarita, Rachmi Untoro

Kesmas

Secara global, dunia dihadapkan pada masalah penyakit tidak menular yang semakin meningkat. Perkembangan terkini menunjukkan bahwa kekurangan gizi pada masa janin dan usia 2 tahun pertama kehidupan berpengaruh sangat penting terhadap risiko terjadi berbagai penyakit tidak menular yang kronis pada usia dewasa. Prevalensi berbagai penyakit tidak menular di Indonesia tergolong tinggi, antara lain hampir sepertiga penduduk dewasa menderita penyakit tekanan darah tinggi. Oleh sebab itu, pada masa yang akan datang, Indonesia dihadapkan pada beban yang berat akibat biaya penatalaksanaan yang tinggi dan produktivitas penduduk yang rendah akibat penyakit tersebut. Prevalensi penyakit tidak menular yang tinggi pada penduduk miskin di Indonesia …

More Juicy 2010 Oregon Pinot Incoming, William "Rusty" Gaffney

William “Rusty” Gaffney (Prince of Pinot) Collection

Rusty Gaffney gives an overview of Oregon's Pinot Noir in this article from his "Prince of Pinot" blog, volume 9, issue 15. Oregon has made a number of important contributions to the success of Pinot Noir, including strict labeling standards, sustainability, use of vertical trellising, and emphasis on matching variety to climate.

Smokejumper Obituary: Jeppson, Richard (Mccall 1967), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Deposition And Characterization Of Hydrophobic Coatings, Vipul Gupta

Theses and Dissertations

Hydrophobic coatings find application in various sectors of the economy including to electronics, textiles, optical devices, and in scientific and commercial equipment. These different applications demand that different hydrophobic coatings posses a range of properties that may include smoothness or roughness, thicknesses on the order of a monolayer or a micron, robustness or the ability to dissolve quickly, transparency or opacity, water resistance or water permeability, electrical conductivity, oleophobicity, etc. However, whatever the final/desired properties, deposition via dry-deposition processes offers significant advantages, including greater reproducibility, increased environmental friendliness, and cost effectiveness on an industrial scale. Herein I explore the chemical …

Strike Mechanics Of An Ambush Predator: The Spearing Mantis Shrimp, M. Devries, E. Murphy, S. Patek

Faculty Publications, Biological Sciences

Ambush predation is characterized by an animal scanning the environment from a concealed position and then rapidly executing a surprise attack. Mantis shrimp (Stomatopoda) consist of both ambush predators (‘spearers’) and foragers (‘smashers’). Spearers hide in sandy burrows and capture evasive prey, whereas smashers search for prey away from their burrows and typically hammer hard-shelled, sedentary prey. Here, we examined the kinematics, morphology and field behavior of spearing mantis shrimp and compared them with previously studied smashers. Using two species with dramatically different adult sizes, we found that strikes produced by the diminutive species, Alachosquilla vicina, were faster (mean peak …

Frequent Arousals From Winter Torpor In Rafinesque's Big-Eared Bat (Corynorhinus Rafinesquii), Joseph S. Johnson, Michael J. Lacki, Steven C. Thomas, John F. Grider

Forestry and Natural Resources Faculty Publications

Extensive use of torpor is a common winter survival strategy among bats; however, data comparing various torpor behaviors among species are scarce. Winter torpor behaviors are likely to vary among species with different physiologies and species inhabiting different regional climates. Understanding these differences may be important in identifying differing susceptibilities of species to white-nose syndrome (WNS) in North America. We fitted 24 Rafinesque’s big-eared bats (Corynorhinus rafinesquii) with temperature-sensitive radio-transmitters, and monitored 128 PIT-tagged big-eared bats, during the winter months of 2010 to 2012. We tested the hypothesis that Rafinesque’s big-eared bats use torpor less often than values …

Medicinal Plants: A Public Resource For Metabolomics And Hypothesis Development, Eve Syrkin Wurtele, Joe Chappell, A. Daniel Jones, Mary Dawn Celiz, Nick Ransom, Manhoi Hur, Ludmila Rizshsky, Matthew Crispin, Philip Dixon, Jia Liu, Mark P. Widrlechner, Basil J. Nikolau

Molecular and Cellular Biochemistry Faculty Publications

Specialized compounds from photosynthetic organisms serve as rich resources for drug development. From aspirin to atropine, plant-derived natural products have had a profound impact on human health. Technological advances provide new opportunities to access these natural products in a metabolic context. Here, we describe a database and platform for storing, visualizing and statistically analyzing metabolomics data from fourteen medicinal plant species. The metabolomes and associated transcriptomes (RNAseq) for each plant species, gathered from up to twenty tissue/organ samples that have experienced varied growth conditions and developmental histories, were analyzed in parallel. Three case studies illustrate different ways that the data …

U.S. Drought Monitor, November 20, 2012, Eric Luebehusen

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for November 20, 2012 (11/20/12) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Hay, Cattle, Winter wheat.

Supporting Conditional Mouse Mutagenesis With A Comprehensive Cre Characterization Resource., Caleb S Heffner, C Herbert Pratt, Randal P Babiuk, Yashoda Sharma, Stephen F Rockwood, Leah R Donahue, Janan T. Eppig, Stephen A Murray

Faculty Research 2012

Full realization of the value of the loxP-flanked alleles generated by the International Knockout Mouse Consortium will require a large set of well-characterized cre-driver lines. However, many cre driver lines display excision activity beyond the intended tissue or cell type, and these data are frequently unavailable to the potential user. Here we describe a high-throughput pipeline to extend characterization of cre driver lines to document excision activity in a wide range of tissues at multiple time points and disseminate these data to the scientific community. Our results show that the majority of cre strains exhibit some degree of unreported recombinase …

Plant Polyadenylation Factors: Conservation And Variety In The Polyadenylation Complex In Plants, Arthur G. Hunt, Denghui Xing, Qingshun Q. Li

Plant and Soil Sciences Faculty Publications

BACKGROUND: Polyadenylation, an essential step in eukaryotic gene expression, requires both cis-elements and a plethora of trans-acting polyadenylation factors. The polyadenylation factors are largely conserved across mammals and fungi. The conservation seems also extended to plants based on the analyses of Arabidopsis polyadenylation factors. To extend this observation, we systemically identified the orthologs of yeast and human polyadenylation factors from 10 plant species chosen based on both the availability of their genome sequences and their positions in the evolutionary tree, which render them representatives of different plant lineages.

RESULTS: The evolutionary trajectories revealed several interesting features of plant polyadenylation factors. …

A Novel Method For Comparative Analysis Of Retinal Specialization Traits From Topographic Maps, Bret A. Moore, Jason M. Kamilar, Shaun P. Collin, Olaf R. P. Bininda-Emonds, Nathaniel J. Dominy, Margaret I. Hall, Christopher P. Hessy, Sonke Johnsen, Thomas J. Lisney, Ellis R. Loew, Gillian Moritz

Dartmouth Scholarship

Abstract Vertebrates possess different types of retinal specializations that vary in number, size, shape, and position in the retina. This diversity in retinal configuration has been revealed through topographic maps, which show variations in neuron density across the retina. Although topographic maps of about 300 vertebrates are available, there is no method for characterizing retinal traits quantitatively. Our goal is to present a novel method to standardize information on the position of the retinal specializations and changes in retinal ganglion cell (RGC) density across the retina from published topographic maps. We measured the position of the retinal specialization using two …

Biochemical Pathways In Cancer, Eun-Kyoung Yim Breuer, Mandi M. Murph, Rolf J. Craven

Pharmacology and Nutritional Sciences Faculty Publications

No abstract.

Pengujian In Vitro Gelatin Sagu, Sumber Npn, Mineral Kobalt Dan Seng Pada Cairan Rumen Domba (Evaluation In Vitro Gelatinized Sago, Sources Npn, Minerals Cobalt And Zinc On The System Of Sheep Rumen), Harry Triely Uhi

Jurnal Ilmu Ternak Universitas Padjadjaran

Penelitian in vitro bertujuan mengamati pengaruh perlakuan gelatin sagu, amonium sulfat, mineral seng dan kobalt. Rancangan yang digunakan adalah rancangan acak lengkap (RAL) dengan 9 perlakuan dan 3 ulangan. Perlakuan yang digunakan adalah R1  (gelatin sagu + urea  + Co 0.2 ppm); R2  (gelatin sagu + urea  + Zn 35 ppm); R3  (gelatin sagu + urea + Co 0.2 ppm dan Zn 35 ppm); R4  (gelatin sagu + amonium sulfat + Co 0.2 ppm); R5  (gelatin sagu + amonium sulfat + Zn 35 ppm); R6  (gelatin sagu + amonium sulfat + Co 0.2 ppm dan Zn 35 ppm); R7  (gelatin …

Reconstructability Analysis Of Genetic Loci Associated With Alzheimer Disease, Martin Zwick, Shawn K. Westaway, Stephen Shervais, Patricia L. Kramer

Complex Systems Faculty Publications and Presentations

Reconstructability Analysis (RA) is an information- and graph-theory-based method which has been successfully used in previous genomic studies. Here we apply it to genetic (14 SNPs) and non-genetic (Education, Age, Gender) data on Alzheimer disease in a well-characterized Case/Control sample of 424 individuals. We confirm the importance of APOE as a predictor of the disease, and identify one non-genetic factor, Education, and two SNPs, one in BINI and the other in SORCS1, as likely disease predictors. SORCS1 appears to be a common risk factor for people with or without APOE. We also identify a possible interaction effect between Education and …

Na+/K+-Atpase Isoform Regulation In Three-Spine Stickleback (Gasterosteus Aculeatus) During Salinity Acclimation, Shelby Judd

College of Science and Health Theses and Dissertations

Most marine and all freshwater fishes regulate the ionic and osmotic composition of their extracellular fluids different from the outside environment. The gills play a prominent osmoregulatory role in maintaining whole body ion and water balance in fish living in both freshwater and saltwater environments. The ability of the gill to regulate salts is dependent on the action of the Na⁺/K⁺-ATPase. When euryhaline fishes, fishes able to tolerate changes in external salinity, experience changes in environmental salinity, they alter their gill physiology and Na⁺/K⁺-ATPase activity to handle changing osmotic and ionic stresses. …

Fermentabilitas Dan Kecernaan Ransum Lengkap Sapi Perah Berbasis Jerami Padi Dan Pucuk Tebu Teramoniasi (In Vitro) Fermentability And Digestibility Of Rice Straw And Cane Top Ammoniated Based Complete Rations (In Vitro), U. Hidayat Tanuwiria

Jurnal Ilmu Ternak Universitas Padjadjaran

Penelitian ini bertujuan mempelajari fermentabilitas dan kecernaan ransum lengkap sapi perah berbasis jerami padi dan pucuk tebu teramoniasi in vitro. Penelitian dilakukan secara eksperimen dengan rancangan acak lengkap (RAL) enam perlakuan yang diulang lima kali. Perlakuan terdiri atas R1 (60% RG + 40% konsentrat), R2 (30% RG + 30% JPA + 40% konsentrat), R3 (30% RG + 30% PTA + 40% konsentrat), R4 (30% JPA + 30% PTA + 40% konsentrat), R5 (60% JPA + 40% konsentrat) dan R6 (60% PTA + 40% konsentrat). Hasil penelitian menunjukkan bahwa Fermentabilitas pucuk tebu diamoniasi lebih tinggi daripada jerami padi diamoniasi, hal ini …

Brainstorm: Head Injuries And The Nfl, Part 13: End Of Regulation Play, John J. Medina Ph.D.

Brainstorm

In my last column I talked about my skepticism about the relationship between head injuries, CTE, and mental illness. I promised that in this, my last installment in the series, I would elaborate on some of the gaps that need filling. As I endeavor to fulfill that promise, I’ll also provide some perspective for future research.

Complex Of Myoglobin With Phenol Bound In A Proximal Cavity, Xiao Huang, Chunxue Wang, Lesa R. Celeste, Leslie L. Lovelace, Shengfang Sun, John H. Dawson, Lukasz Lebioda

Faculty Publications

Sperm whale myoglobin (Mb) has weak dehaloperoxidase activity and catalyzes the peroxidative dehalogenation of 2,4,6-trichlorophenol (TCP) to 2,6-dichloroquinone. Crystals of Mb and of its more active G65T variant were used to study the binding of TCP, 4-iodophenol (4-IP) and phenol. The structures of crystals soaked overnight in a 10 mM solution of phenol revealed that a phenol molecule binds in the proximal cavity, forming a hydrogen bond to the hydroxyl of Tyr146 and hydrophobic contacts which include interactions with C and C of the proximal histidine His93. The phenol position corresponds to the strongest xenon binding site, Xe1. It …

Body Mass Index Trends And Nutrition Goals Of College Students Between 2007–2011, Alison L. Lynn

Department of Nutrition and Health Sciences: Dissertations, Theses, and Student Research

The incidence of overweight and obesity has become a major public health concern in the United States. The college years are a time during which many dietary and physical activity habits are formed. Health professionals on college campuses have the ability to reach large numbers of people and provide nutrition education to help reduce the rising rates of obesity. The purpose of this study is to examine the body mass index (BMI) trends of college students at the University of Nebraska-Lincoln, between the years 2007-2011 and to determine the nutrition-related goals of these students. Data was previously collected from NUTR …

Growth Gone Awry: Exploring The Role Of Embryonic Liver Development Genes In Hcv Induced Cirrhosis And Hepatocellular Carcinoma, Martha K. Behnke

Theses and Dissertations

Introduction and methods: Hepatocellular carcinoma (HCC) remains a difficult disease to study even after a decade of genomic analysis. Metabolic and cell-cycle perturbations are known, large changes in tumors that add little to our understanding of the development of tumors, but generate “noise” that obscures potentially important smaller scale expression changes in “driver genes”. Recently, some researchers have suggested that HCC shares pathways involving the master regulators of embryonic development. Here, we investigated the involvement and specificity of developmental genes in HCV-cirrhosis and HCV-HCC. We obtained microarray studies from 30 patients with HCV-cirrhosis and 49 patients with HCV-HCC and compared …

Proposed Coherent Trapping Of A Population Of Electrons In A C60 Molecule Induced By Laser Excitation, Thomas George, G.P. Zhang

Chemistry & Biochemistry Faculty Works

This Letter demonstrates the possibility of generating coherent population trapping in C60. Similar to a three-level Λ system, C60 has a forbidden transition between the highest occupied molecular orbital (HOMO) (|a⟩) and the lowest unoccupied molecular orbital (LUMO) (|c⟩), but a dipole-allowed transition between HOMO and LUMO+1 (|b⟩) and between |b⟩ and |c⟩. We employ two cw laser fields, one coupling and one probe. The strong coupling field is switched on first to resonantly excite the transition between |b⟩ and |c⟩. After a delay, the probe is switched on; the coherent interaction between the coupling and probe fields traps the …

P21-Activated Kinase-1 Signaling Regulates Transcription Of Tissue Factor And Tissue Factor Pathway Inhibitor., Beatriz Sanchez-Solana, Mona Motwani, Da-Qiang Li, Jeyanthy Eswaran, Rakesh Kumar

Biochemistry and Molecular Medicine Faculty Publications

Tissue factor (TF) is a cell-surface glycoprotein responsible for initiating the coagulation cascade. Besides its role in homeostasis, studies have shown the implication of TF in embryonic development, cancer related events, and inflammation via coagulation-dependent and -independent (signaling) mechanisms. Tissue factor pathway inhibitor (TFPI) plays an important role in regulating TF-initiated blood coagulation. Therefore, transcriptional regulation of TF expression and its physiologic inhibitor TFPI, would allow us to understand the critical step that control many different processes. From a gene profiling study aimed to identify differentially regulated genes between wild type (WT) and p21-activated kinase 1-null (PAK1-KO) mouse embryonic fibroblasts …

Economic Impact Of The Ability Of Nebraska Agriculture To Irrigate: The Case Of 2012, Nebraska Farm Bureau, Decision Innovation Solutions

Nebraskiana Publications: Resources and Materials on the 37th State

With the harsh 2012 growing season behind for Nebraska crop producers, sights are now on the prospects for 2013. An exceptional drought gripped much of the United States from mid-June to the end of the growing season. In many regards, the drought persists in many parts of the country. Without significant moisture accumulations prior to spring planting 2013, drought conditions may continue into next year’s growing season. Since the drought of 2012 became a cause of concern in mid-2012, there have been discussions regarding ways to limit the use of water for agricultural purposes. Many of these discussions will result …

Macroevolutionary Dynamics And Historical Biogeography Of Primate Diversification Inferred From A Species Supermatrix, Mark S. Springer, Robert Meredith, John Gatesy, Christopher A. Emerling, Jong Park, Daniel L. Rabosky, Tanja Stadler, Cynthia Steiner, Oliver A. Ryder, Jan E. Janečka, Colleen A. Fisher, William J. Murphy

Department of Biology Faculty Scholarship and Creative Works

Phylogenetic relationships, divergence times, and patterns of biogeographic descent among primate species are both complex and contentious. Here, we generate a robust molecular phylogeny for 70 primate genera and 367 primate species based on a concatenation of 69 nuclear gene segments and ten mitochondrial gene sequences, most of which were extracted from GenBank. Relaxed clock analyses of divergence times with 14 fossil-calibrated nodes suggest that living Primates last shared a common ancestor 71-63 Ma, and that divergences within both Strepsirrhini and Haplorhini are entirely post-Cretaceous. These results are consistent with the hypothesis that the Cretaceous-Paleogene mass extinction of non-avian dinosaurs …

Novel Strategies To Improve Metabolic Parameters And Precondition Diabetic Hearts Against Ischemia/Reperfusion Injury, Amit Varma

Theses and Dissertations

Insulin resistance and chronic hyperglycemia promote vascular damage, increase circulating levels of inflammatory cytokines and lead to increased morbidity and mortality. MicroRNAs (miRs) -103/107 have been shown to negatively regulate insulin sensitivity and glucose homeostasis. Based on complimentary binding profiles, the downstream target gene of miR-103/107 is caveolin-1 (Cav-1). We hypothesized that daily administration of the phosphodiesterase-5 inhibitor tadalafil (TAD) ± the curcumin analogue (HO-3867) will attenuate inflammation, improve metabolic parameters and reduce infarct size after ischemia/reperfusion injury (IRI). Furthermore, we propose that TAD therapy will reduce myocardial expression of miR-103/107 and increase mRNA and protein levels of its target …