Life Sciences Commons^™

Mtor Pathway Activation Following Sciatic Stimulation In Wild-Type And Desmin Knockout Mice, Daniel S. Nelson

Theses and Dissertations

The 52 kDa intermediate filament protein desmin plays an important role in force transmission in skeletal muscle by connecting myofibrils at Z-lines and to the sarcolemma. Desmin content in muscle adapts to contractile activity and may be involved in cellular signaling mechanisms responsible for muscle growth. Purpose: To compare signaling responses of the mTOR pathway in wild type (WT) vs desmin knock out (KO) mice. Methods: WT (n=12) and KO (n=12) mice were exposed to high frequency electric stimulation of the left hindlimb to elicit an acute response of the mTOR pathway. Non-stimulated right hindlimbs were used as a within …

Thin Soils And Sacbes: The Soil Resources Of Uci, Yucatan, Mexico, Zachary S. Larsen

Theses and Dissertations

The objective of this study was to use pedological evidence in conjunction with Geographic Information Systems, and soil physical and chemical analyses as means to better understand the agricultural landscape surrounding the ancient Maya city of Uci. Specifically, the query of this thesis is to determine whether there is an association between settlement density and soil resources, and what relationship if any there is between the ancient sacbe of Uci and its surrounding agricultural potential. Stable carbon isotope analysis of the humin fraction of the soil organic matter was conducted on several profiles from karst depressions known as rejolladas near …

Cultural Thinning Of Native Sagebrush Stands To Increase Seed Yields, Kurt David Elder

Theses and Dissertations

Wyoming big sagebrush (Artemisia tridentata Nutt.) is an important native shrub in the Great Basin because of its wide distribution where it dominates over 60 million ha and provides essential habitat and forage for many varied species. The hand collection of sagebrush seed often results in seed scarcity and the available seed quantities are at times inadequate to revegetate large areas that have been disturbed, resulting in a demand for sagebrush seed. Study locations were selected near Scipio and Sahara sand dunes of Utah, and treatments were 1-) control, no treatment applied area left undisturbed 2-) general chemical strip …

A Tree Theory Case Study In Steinernema, Camille Eileen Finlinson Porter

Theses and Dissertations

It is widely assumed that current phylogenetic methods are fairly accurate at recovering the evolutionary relationships among different species, but evaluating the relative success of this enterprise is a difficult task. This study addresses some fundamental questions associated with generating phylogenetic trees. The complete genomes of five species of Steinernema were sequenced and assembled. Genes were predicted in AUGUSTUS and orthologous genes were found from those data using OrthoMCL. I aligned 3890 genes in MAFFT and eliminated poorly aligned positions with GBlocks. I created individual trees for each gene as well as a supermatrix tree in PAUP*, using a closely …

Long-Term Depression Of Excitatory Inputs To Gabaergic Neurons In The Ventral Tegmental Area, Philip J. Sandoval

Theses and Dissertations

Dopamine cells within the ventral tegmental area of the brain are involved in motivation and reward. Drugs of abuse target these dopamine cells altering their activity and plasticity resulting in addiction. While dopamine cell activity is primarily involved in addiction, the GABA neurons in the VTA have also been shown to have an indirect role. By decreasing the activity of the inhibitory GABA inputs onto dopamine neurons abusive drugs can indirectly increase dopamine cell activity resulting in addictive behaviors. However, although GABA neurons are important in the perception of reward, much less is known about how the excitatory inputs to …

The Pre-Application Of Hydrocortisone Cream And Its Effect On Transdermal Drug Delivery By Phonophoresis, Patrick Thomas Webb

Theses and Dissertations

Context: Transdermal delivery of hydrocortisone by phonophoresis is used for the treatment of musculoskeletal conditions. Research shows hydrocortisone and other white or opaque topical preparations transmit ultrasound energy poorly. Effective transmission of ultrasound is important in phonophoresis. Main Outcome measured: Samples of subcutaneous interstitial fluid were collected during and for 20 minutes following phonophoresis treatment. Cortisol concentrations were analyzed by an enzyme linked immune-assay (ELISA) test. Objective: Determine the subcutaneous cortisol concentration after two different phonophoresis treatments using a 2.5% hydrocortisone preparation. Design: Randomized design in which 22 healthy participants were assigned to receive a phonophoresis treatment where: 1) hydrocortisone …

Transcriptome And Methylation Analysis Of Gossypium Petal Tissue, Aditi Rambani

Theses and Dissertations

Polyploidization instantly doubles all genome content by combining two genomes that have markedly different methylation and gene expression levels. This process may be accompanied by genetic and epigenetic changes in each genome. Sequencing of the transcriptome (RNA-seq) and the methylome (bisulfite treated libraries whole genome libraries) were used to measure gene expression and methylation levels of genic regions of allopolyploid cotton petals and petals of their diploid relatives. Many differentially expressed genes detected by RNA-seq were consistent with expression levels previously detected by microarrays. RNA-seq results also reconfirmed the presence of general polyploid gene expression trends like expression level dominance …

Transcriptome Analysis Of Drought Induced Stress In Chenopodium Quinoa, Joshua Arthur Raney

Theses and Dissertations

RNA-seq transcriptome analysis of Chenopodium quinoa at different water treatment levels was conducted in a greenhouse study using four water treatments (field capacity to drought) on a valley ecotype quinoa (variety Ingapirca) and an Altiplano Salares ecotype quinoa (variety Ollague). Physiological results support the earlier findings that the Salares ecotypes display greater tolerance to drought-like stress conditions than the valley ecotypes (as determined by growth rate, photosynthetic rate, stomatal conductance, and stem water potential). cDNA libraries from root tissue sample for each treatment x variety combination were sequenced using Illumina Hi-Seq technology in an RNA-seq experiment. De novo assembly of …

Characterization Of Sterile Tassel Silky Earl: A Homeotic B-Class Gene Involved In Specification Of Floral Organ Identity In Zea Mays, Steven Keith Williams

Theses and Dissertations

Specification of floral organ identity in angiosperm flowers is accomplished by the coordinated activity of A-, B-, C-, and E-class MADS-box genes. In the eudicots, B-class genes specify petal and stamen identity. This eudicot B-class function depends on the simultaneous expression of genes from two paralogous B-class lineages (the DEFICIENS/APETALA3 lineage and the GLOBOSA/PISTILLATA lineage). Proteins produced by genes from these two lineages interact as obligate heterodimers and together regulate the transcription of various downstream targets. These obligate heterodimers also positively regulate the transcription of the B-class genes themselves, thereby mediating a unique B-class autoregulatory feedback loop. There is compelling …

Psychological Well-Being And Dietary Quality Of College Women: Examining The Confounding Influence Of Sleep And Physical Activity, Whitney Ann Hebbert

Theses and Dissertations

Objective. To determine the relationship between overall psychological well-being and stress on diet quality among young adult women and to examine the potential confounding influence of season, physical activity and sleep on these relationships. Design/Participants. The study used a cross-sectional design. Three hundred and fifty-one women were recruited to participate in the study. All participants were university students (20.2 ± 1.6 y). Overall psychological well-being was assessed using the General Well-being Schedule (GWB) and the Perceived Stress Scale (PSS). Diet intake was measured using three 24-hour recalls over a seven day period. The Healthy Eating Index (HEI) was calculated to …

Life History Analysis Of James River Atlantic Sturgeon (Acipenser Oxyrinchus Oxyrinchus) With Implications For Management And Recovery Of The Species, Matthew Balazik

Theses and Dissertations

Sturgeon species (family Acipenseridae) are threatened globally due to habitat destruction, pollution, and overfishing. The Atlantic sturgeon Acipenser oxyrinchus oxyrinchus was listed as a federally endangered species in 2012. Atlantic sturgeon have a complex life history that utilizes a wide range of habitats. Timing of life history varies in different areas requiring each population to be studied. Very little work has been published on Atlantic sturgeon reproduction in the James River, Virginia. To aid the recovery of James River Atlantic sturgeon, aspects of life history need to be addressed. To increase understanding of Atlantic sturgeon life history a length at …

A Survey Of Invasive Exotic Ants Found On Hawaiian Islands: Spatial Distributions And Patterns Of Association, Camie Frandsen Martin

Theses and Dissertations

An intensive sampling of all ant species encountered on 6 Hawaiian Islands: Big Island, Maui, Oahu, Kauai, Molokai, and Lanai took place between 1988 and 1996. Species presence and absence was recorded at each site. Using remote sensing, variables were added insitu and used throughout my analysis. Species accumulation curves suggest that sampling was comprehensive. There is a significant trend between island area and species richness which validates the Theory of Island Biogeography for invasive species. Islands were found to be significantly nested by area, order, and tourism. Cluster analysis shows a link between elevation, land-use and island, and species …

Effects Of Chemical Stimulation And Tumor Co-Incubation On Macrophage Activation And Aggressiveness, Measured Through Phagocytosis And Respiratory Burst, Bo Marcus Gustafsson

Theses and Dissertations

Macrophages are a cornerstone in innate immunity, especially important in detecting and killing invading microorganisms. In tumor biology, the macrophages can contribute both to anti-tumor activity and tumor promotion depending on individual tumor microenvironment and therefore have a large impact on both tumor progression and prognosis. Two of the most important functions of macrophages are the ability to phagocytose microorganisms and then kill them through the respiratory burst. Phagocytosis activates the respiratory burst, but the more subtle interactions between these processes are less known. Since phagocytosis and reactive oxygen species production are two attributes that change between the classically and …

Improving Phosphorus Use Efficiency Through Organically Bonded Phosphorus, Micheal W. Hill

Theses and Dissertations

Current maximum efficiency of phosphorus (P) fertilizers that is utilized by plants in the same year of application ranges from near zero to thirty percent. Despite low utilization of P in crop production, yields are often limited by P deficiencies. Innovative technology is requisite to achieve greater efficiency as fertilizer demands are increasing, while phosphorus mineral resources are rapidly being depleted. A growing environmental concern for nutrient pollution of surface waters also carries significant weight. A novel new product, Carbond® P, is promising technology to increase P use efficiency. Research is needed to understand its capabilities and the functioning mechanisms …

Summer Watering Patterns Of Mule Deer And Differential Use Of Water By Bighorn Sheep, Elk, Mule Deer, And Pronghorn In Utah, Andrew V. Shields

Theses and Dissertations

Changes in the abundance and distribution of free (drinking) water can influence wildlife in arid regions. In the western USA, free water is considered by wildlife managers to be important for bighorn sheep (Ovis canadensis), elk (Cervus elaphus), mule deer (Odocoileus hemionus), and pronghorn (Antilocapra americana). Nonetheless, we lack information on the influence of habitat and landscape features surrounding water sources, including wildlife water developments, and how these features may influence use of water by sexes differently. Consequently, a better understanding of differential use of water by the sexes could influence the conservation and management of those ungulates and water …

Microfluidic Devices With Integrated Sample Preparation For Improved Analysis Of Protein Biomarkers, Pamela Nsang Nge

Theses and Dissertations

Biomarkers present a non-invasive means of detecting cancer because they can be obtained from body fluids. They can also be used for prognosis and assessing response to treatment. To limit interferences it is essential to pretreat biological samples before analysis. Sample preparation methods include extraction of analyte from an unsuitable matrix, purification, concentration or dilution and labeling. The many advantages offered by microfluidics include portability, speed, automation and integration. Because of the difficulties encountered in integrating this step in microfluidic devices most sample preparation methods are often carried out off-chip. In the fabrication of micro-total analysis systems it is important …

Habitat Selection Of Greater Sage-Grouse Centrocercus Urophasianus And Northern River Otters Lontra Canadensis In Utah, Matthew D. Westover

Theses and Dissertations

Greater sage-grouse populations have decreased steadily since European settlement in western North America. Reduced availability of brood-rearing habitat has been identified as a limiting factor for many populations. We used radio-telemetry to acquire locations of sage-grouse broods from 1998 to 2012 in Strawberry Valley, Utah. Using these locations and remotely-sensed imagery, we proceeded to 1) determine which features of brood-rearing habitat could be identified using widely available, fine-scale imagery 2) assess the scale at which sage-grouse selected brood-rearing habitat in our study area, and 3) create a predictive habitat model that could be applied across our large study area to …

Microflora Of Traditional Mexican Corn Masa And Its Effect On Folic Acid Degradation, Stephen J. Adolphson

Theses and Dissertations

Many Mexican women consume inadequate amounts of folic acid. Fortification of the corn tortilla could be an effective way to help increase the folic acid levels among the Mexican population. Previous studies have shown significant folic acid losses in fortified tortilla dough (masa) as it is held before baking. This loss in folic acid could be due to degradation by lactic acid bacteria naturally present in the masa. The microflora of traditionally made nixtamalized corn masa from six tortilla mills in Guadalajara, Mexico were isolated and characterized, and their effect on folic acid content was evaluated. Isolated bacteria were identified …

Alteration Of Behavior By Desert Bighorn Sheep From Human Recreation And Desert Bighorn Sheep Survival In Canyonlands National Park: 2002 - 2010, Kanalu K. Sproat

Theses and Dissertations

Human encroachment into wilderness areas can influence the persistence of wildlife populations by decreasing and degrading habitat, displacement, and decreasing survival. For bighorn sheep (Ovis canadensis), some human activities are detrimental, causing both physiological stress and habitat abandonment. Between 1979 and 2000, human recreation has increased over 300% in areas occupied by desert bighorn sheep (O. c. nelsonii) in southeastern Utah. We investigated if an increase in human activity in areas used by bighorns affected their behavior. We observed 34 bighorn sheep using focal-animal sampling for >14 hrs to compare time spent grazing and scanning between areas of high and …

Gene Expression Response In Early Developmental Stages Of Rainbow Trout Exposed To Ecologically Relevant Concentrations Of Malathion, Susan Miller

Theses and Dissertations

Understanding the early life stage toxic effects of environmental organophosphate exposure on organism health is crucial to identifying biomarkers that can be used for preventative care. Malathion, a potent organophosphate, is one of the most widely used organophosphates in agriculture and pest eradication. Due to its widespread use, pesticide runoff into area bodies of water poses a great threat to aquatic life and human inhabitants. Acute exposure to high concentrations of malathion causes neurological abnormalities and can result in respiratory failure, muscle spasms, and mental confusion in humans.

In the present study, the effects of malathion are observed following acute, …

Hormonal And Morphological Aspects Of Growth And Sexual Maturation In Wild-Caught Male Vervet Monkeys (Chlorocebus Aethiops Pygerythrus), Tegan J. Gaetano

Theses and Dissertations

Knowledge of baseline changes in testosterone (T) and other androgens is central to both investigations of morphological, physiological, and behavioral correlates of inter-individual variation in the timing and shape of key events and transitions over the life course and questions of the evolution of species-specific schedules of maturation in primates. T represents an important determinant of spermatogenesis in male mammals and plays a central role in the expression of male sexual behavior and the development of secondary sex characteristics. This research integrates hormonal and morphometric methods to determine age-related changes in fecal testosterone (fT) metabolites and morphological markers of sexual …

Health Care Informatics Support Of A Simulated Study, Zeinab Salari Far

Theses and Dissertations

The objective of this project is to assess the value of REDCap (Harris, 2009) by conducting a simulated breast cancer clinical trial and demonstration. REDCap is a free, secure, web-based application designed to support data capture for research studies. To assess REDCap's value, we conducted a simulation of a clinical trial study designed to compare the use of two new technologies for breast cancer diagnosis and treatment with current best practice breast cancer diagnosis and treatment. We call the trial, "Real-Time Operating Room BC Diagnostic Treatment (RORBCDT)". The RORBCDT clinical trial is designed to assess the value of a new …

A Systematic Framework For Radio Frequency Identification (Rfid) Hazard Mitigation In The Blood Transfusion Supply Chain From Donation To Distribution, Natalie Simone Rahming

Theses and Dissertations

The RFID Consortium is developing what will be the first FDA-approved use of radio frequency identification (RFID) technology to identify, track, manage, and monitor blood throughout the entire blood transfusion supply chain. The iTraceTM is an innovative technological system designed to optimize the procedures currently employed when tracing blood from the donor to the recipient. With all novel technologies it is essential to consider not only the advantages, but also the potential harms that may come about from using the system. The deployment of the iTraceTM consists of two phases: 1) Phase One - application of the iTraceTM from the …

Part 1. Design And Synthesis Of Cysteine/Cystine Prodrugs And Bioisosteres Including Symmetrical And Unsymmetrical Disulfides Designed To Increase Cystine Levels In The Cns In Order To Drive The Cystine/Glutamate Antiporter: A Novel Treatment For Schizophrenia And Drug Addiction. Part 2. Design And Synthesis Of Subtype Selective Ester Bioisosteres Of Bzr Ligands For Gabaa/Benzodiazepine Receptors To Enhance Metabolic Stability, Edward Merle Johnson Ii

Theses and Dissertations

Part 1. Schizophrenia is a debilitating disorder that affects almost 1% of the world's population; pharmacotherapy expenditures for this disorder exceed $10 billion dollars even though existing medications exhibit a poor safety/efficacy profile. It is estimated that 75% of patients discontinue drug treatment, in part due to poor safety/efficacy. The current data set demonstrates that cysteine prodrug NAC reverse the behavioral and neurochemical effects of PCP used to model schizophrenia.

As a result cysteine prodrugs represent a highly novel approach to treating schizophrenia; indeed, these compounds may ultimately be more effective than existing medications because these drugs target the pathology …

Complexity And Uncertainty In Human And Ecological Risk Assessment, Matthew Jordan Dellinger

Theses and Dissertations

Multiple interacting stressors in the environment present increasingly complex risks to human health. Too often, however, the data required for traditional risk assessment are either lacking or unavailable at the necessary spatial or temporal scale. In addition, assessment practices and management policies need to move away from single factor approaches in order to accommodate the reality of complex chemical mixtures and environmental stressors. Recent literature suggests that a paradigm shift is under way. This points to a need for the development of new techniques both for rapid data collection and flexible risk assessment strategies that can adapt to make use …

Neural Responses To Food Pictures And Their Association With Dietary Intake, Edward Christenson

Theses and Dissertations

BACKGROUND: Food-related visual cues may affect eating behavior and energy intake. The purpose of this study was to determine the neural response to pictures of food and whether or not the neural responses were associated with energy intake. METHODS: Using a cross-sectional design, 60 adults participated in this study. Each participant reported to the laboratory in a fasted state, were fitted with a 128-electrode electroencephalogram (EEG) net, and were shown pictures grouped into three categories: high-calorie foods, low-calorie foods, and distractor pictures. These pictures were shown in random order. Furthermore, participants were shown these pictures in one passive condition and …

Investigation Of The Quaternary Structure Of An Abc Transporter In Living Cells Using Spectrally Resolved Resonance Energy Transfer, Deo R. Singh

Theses and Dissertations

Förster resonance energy transfer (FRET) has become an important tool to study proteins inside living cells. It has been used to explore membrane protein folding and dynamics, determine stoichiometry and geometry of protein complexes, and measure the distance between two molecules. In this dissertation, we use a method based on FRET and optical micro-spectroscopy (OptiMiS) technology, developed in our lab, to probe the structure of dynamic (as opposed to static) protein complexes in living cells. We use this method to determine the association stoichiometry and quaternary structure of an ABC transporter in living cells. Specifically, the transporter we investigate originates …

An Evaluation Of The Effect Of Stormwater Treatment Ponds On Wetland And Stream Quality Indicators, Subhomita Ghosh Roy

Theses and Dissertations

Modifications of land cover in urban areas are leading to hydrological, physiochemical and subsequent biological disturbances in the receiving aquatic ecosystems. Resulting in damage of the limited quantity of available freshwater. Based on the recognition of the value of natural wetlands in water quality improvement, constructed wetlands have been widely used for water treatment, to remove fine pollutants from catchment runoff also to control increased surface runoff from urbanization. The hypotheses of the study was that the surface water quality would improve while the sediment quality would vary moving from up-gradient to down-gradient through the interconnected wetlands, relative to precipitation, …

Validation Of Hand-Held Bioelectrical Impedance Analysis For The Assessment Of Body Fat In Young And Old Adults, Lynn A. Wheeler

Theses and Dissertations

Because of health concerns surrounding overweight and obesity, many individuals, health clubs, and physicians have begun using portable measures of body fat (BF) that are inexpensive and easy-to-use. Based on measures from these devices, health-related decisions are made and progress during fitness and/or dietary programs is tracked. However, accuracy of portable BF devices can be questionable, especially in free-living settings. Purpose: The purpose of this study is to evaluate the validity and reliability of a commercially-available, hand-held bioelectrical impedance analysis (BIA) device as a measure of BF during a controlled laboratory condition and a free-living condition. Methods: A total of …

Freshwater Phytoplankton Populations Detected Using High Pressure Liquid Chromatography (Hplc) Of Taxon-Specific Pigments, Lauren Jeanne Simmons

Theses and Dissertations

Phytoplankton are key primary producers in aquatic ecosystems, and the principle food source for primary consumers. Individual phytoplankton species respond to different physical, chemical and biological parameters, so monitoring taxonomic composition of the phytoplankton community is a means to monitor changes in environmental conditions. Phytoplankton community changes have frequently been monitored by estimating biomass (using chlorophyll a, measured fluorometrically), and taxonomic data obtained from cell counts. While such methods are useful, they are time-consuming. I hypothesized that high pressure liquid chromatography (HPLC) methods, which have been frequently used in marine systems, would allow separation and identification of key pigments. …