Computer and Systems Architecture Commons^™

A Unified Pipeline For Network-Based Gene Pattern Discovery, Siddhartha Reddy Pullannagari, Sharlee Climer

Undergraduate Research Symposium

Large-scale genetic datasets from diverse diseases, including cancer and neurodegenerative disorders such as Alzheimer’s disease, provide unprecedented opportunities to study disease pathogenesis and generate hypotheses for drug discovery. However, identifying meaningful genetic interaction patterns within these datasets remains challenging due to combinatorial relationships amongst genes and heterogeneous biological underpinnings across subtypes. This project systematically analyzes a diverse collection of omics datasets (e.g., GSE44076, GSE97810, GSE127711, GSE112679) obtained from the NCBI Gene Expression Omnibus (GEO), spanning multiple biological conditions and data types. We use a unified computational pipeline designed to handle variation in dataset size, structure, and context. The steps in …

Cognitive Resilience At The Edge: Hyperdimensional Computing Versus Deep Learning For Hardware-Degraded Rf Classification, Adrian B. Cisneros, Jeong Yang

Military Cyber Affairs

Autonomous Collaborative Combat Aircraft (CCA) operating in contested electromagnetic environments must classify Radio Frequency (RF) signals on edge silicon that degrades over the mission lifetime due to thermal stress, radiation, and manufacturing variation. Deep neural networks dominate RF classification on pristine hardware, but their weights are precise and interdependent, causing catastrophic accuracy collapse as the underlying chip ages. We investigate whether Hyperdimensional Computing (HDC), a brain-inspired paradigm that distributes information across thousands of dimensions, can provide a reliability floor where Deep Learning fails. Using the RadioML 2016.10A dataset filtered to five digital modulations relevant to drone command-and-control links, we trained …

Breaking The Build: Detecting Software Supply Chain Vulnerabilities In Ci/Cd Pipelines, Mercedes R. Wahl, Dr. Benjamin Yankson

Military Cyber Affairs

This study examines whether integrating structured DevSec- Ops security controls into CI/CD pipelines can reduce software supply chain risk by preventing vulnerable components from progressing through the software development lifecycle. Software supply chain attacks frequently originate from weaknesses or compromises within dependencies, build environments, and trusted development stages, making early detection essential. A controlled sandbox experiment compared two pipeline configurations: a baseline CI/CD pipeline with no automated security enforcement and a secure DevSecOps pipeline integrating automated vulnerability scanning, SBOM generation, and artifact integrity verification. A known vulnerable dependency, the Python requests package (version 2.19.0) associated with CVE-2018-18074, was intentionally introduced …

Mitigating Common Vulnerabilities And Exposures In Cobol-Based Critical Systems Using The Strangler-Fig Pattern, Lauren E. Caruso, Vincent J. Compeau, Assefaw H. Gebremedhin

Military Cyber Affairs

COBOL-based legacy systems continue to underpin critical infrastructure in banking and government sectors despite their age and associated cybersecurity risks. Originally developed through a Department of Defense–sponsored initiative to standardize business computing, COBOL remains widely used in mission-critical environments. However, these systems face increasing vulnerabilities due to outdated security architectures, workforce shortages, and rising maintenance costs. This paper examines cybersecurity and operational challenges associated with COBOL systems and evaluates the Strangler Fig pattern as a modernization strategy that enables incremental replacement while maintaining continuity. The findings highlight implications for financial institutions and public-sector organizations dependent on legacy infrastructure.

From Framework To Toolchain: Implementing Zero Trust Architecture In Cloud-Native Environments For Dow Compliance, Shelby C. Snyder

Military Cyber Affairs

Federal agencies face a fiscal year 2027 target for enterprise-wide Zero Trust deployment, but NIST SP 800-207A defines logical components without identifying the Kubernetes technologies that implement them. This paper proposes a three-tier mapping of the Policy Engine, Policy Administrator, and Policy Enforcement Point to service mesh, microsegmentation, and perimeter tooling, stating the criteria by which each component is classified. It then applies a defined rubric to six Zero Trust vendors across component alignment, Kubernetes capability, federal authorization posture, and evidence quality, finding that no single vendor covers all three tiers. The mapping is a testable architectural proposition; a Stage …

Hybrid Deep (Cnn-Bilstm) Intrusion Detection For Defense And Mission-Critical Networks, Corey A Cheng, Jermaine Anim-Addo, Asma Jakir Hussain, Zion O Smith-Fox, Sanjay Goel, Yuksel Celik

Military Cyber Affairs

This article examines how hybrid deep learning can strengthen intrusion detection for military and defense networks. Using the CSE-CIC-IDS2018 dataset, the study evaluates a CNN-BiLSTM model designed to detect benign traffic and multiple attack categories, including DDoS, DoS, botnet, brute-force, web attack, and infiltration activity. The model achieved strong multi-class detection performance, with 0.9893 accuracy and 0.9979 ROC-AUC. The findings suggest that AI-supported intrusion detection can improve cyber defense operations, analyst triage, and protection of mission-critical networks.

Are Large Language Models Safe? A Vulnerability Analysis Of Generated Source Code, James Richards-Perhatch, Mitchell Milander, James M. Halvorsen, Assefaw Gebremedhin

Military Cyber Affairs

The increasing complexity of software and demands for rapid deployment have pushed the software industry to rely more on large language models (LLMs) in developing source code. However, as this technology is still relatively recent, questions can arise about the safety of the generated code. This paper presents an analysis of seven LLMs with respect to the presence of vulnerabilities within source code. Our findings show that LLMs are more likely to produce vulnerable web applications than vulnerable C programs, and that vulnerabilities are more likely to occur when program size and complexity increases.

Semantic Shields: Automating Critical Infrastructure Defense Via Nlp-Driven Ransomware Profiling, Henry Trowbridge, Ian Zalcberg, Ryan Schley, Carter Yagemann, Natasha Phan, Srikar Maduposu, Vimal Buck

Military Cyber Affairs

Ransomware poses a growing threat to critical infrastructure, where successful attacks can disrupt operational technology (OT) and industrial control systems (ICS) with significant public safety consequences. However, attributing ransomware incidents to specific threat actors remains challenging due to ransomware-as-a-service ecosystems, actor rebranding, and the obfuscation of traditional indicators of compromise. This paper presents Semantic Shields, an NLP-driven attribution framework that leverages BERT-generated semantic embeddings and DBSCAN clustering to profile ransomware actors through the linguistic characteristics of ransom notes. Using a dataset of 295 ransom notes from 189 distinct threat groups, the framework achieved an 87.2% true positive clustering rate and …

Llm-Generated Countermeasures For Iot Cyberattacks, James Alger, Michael Tu

Military Cyber Affairs

The rapid expansion of the Internet of Things (IoT) has introduced significant cybersecurity challenges, particularly for resource-constrained devices that traditional intrusion detection systems often fail to protect effectively. This paper proposes a novel, two-phase autonomous security pipeline designed to bridge the gap between probabilistic threat detection and deterministic network enforcement. The framework first utilizes a custom Time Series Transformer (TST) to classify multivariate network traffic and identify specific attack vectors, such as ransomware, SQL injections, and malicious file uploads. In the second phase, an agentic AI layer, comprising a locally hosted Large Language Model (LLM) orchestrated via LangGraph, processes the …

Foreward, Todd Arnold

Military Cyber Affairs

No abstract provided.

Letter From The Director: Mastery In Practice, Joseph Schafer

Military Cyber Affairs

No abstract provided.

The Implications Of Autonomous Vehicle Adoption For Parking Dynamics And Traffic Flow, Hamid Bagha

Staff Scholarship - Australia & Dubai

Parking dynamics directly influence land use and transportation efficiency. While conventional vehicles remain stationary for roughly 95% of their operational lifetime, private autonomous vehicles (AVs) can actively reposition themselves using strategies such as empty cruising, returning home, or seeking cheaper peripheral parking. This shifts space occupation from parking stalls to the active road network.

Using a high-fidelity microscopic simulation dataset for the City of Melbourne, this thesis examines the spatiotemporal trade-offs between parking dynamics and traffic flow across heterogeneous Traffic Analysis Zones (TAZs). Experimental results show that at a 30% AV adoption rate, alternative parking strategies decrease network-wide parking search …

Creating An Updated Risc-V Platform With Hypervisor Support, Carter A. Glatt

Masters Theses

Virtualization has become an important methodology for implementing security and efficiency in embedded systems design. Virtualized environments provide flexibility and scalability of user-space environments, as hardware capabilities allow for multiple environments to run concurrently using the same hardware without impacting system performance or cost metrics. The ability to implement virtualized environments is fundamentally based on the instruction set architecture (ISA), which implements the necessary commands to facilitate the interface between physical hardware and virtual components.

RISC-V is an open-source ISA that can be used to generate platforms that support virtualization through the use of the H-Extension ISA. Previous research into …

The Self-Aware Room: A Framework For Operational Self-Awareness In Evolvable Blended Environments, David B. Smith

Publications and Research

The Self-Aware Room (SAR) is a room-scale research environment developed within the larger Balanced Blended Space and Blended Reality Performance System research trajectory. Rather than treating the room as a conventional “smart” environment composed of fixed automation technologies, SAR approaches it as an evolvable blended environment made from physical, virtual, conceptual, sensory, computational, and performative relationships. Its defining feature is not any particular sensor, model, or output device, but the set of transformations through which physical activity becomes structured observation, bounded representation, interpreted state, governed decision, and mediated response.

This paper develops the conceptual and methodological foundations of SAR as …

Engineering For Compromise, Ron Ross

Other Faculty Materials

Modern systems cannot credibly depend on every component, account, service, person, supplier, and supporting dependency remaining trustworthy secure throughout the system life cycle. Prevention-centered cybersecurity remains essential, but for mission-critical systems it is not a sufficient engineering strategy. This paper introduces the concept of Engineering for Compromise (EfC), a systems security engineering strategy that deliberately assumes selected system elements may fail, become malicious, lose integrity, or fall under adversary control and then asks whether the system can continue to prevent unacceptable loss. EfC separates component compromise, system compromise, and mission loss as distinct events and uses architecture to place barriers …

A Comparative Classical And Data-Driven Facial Analysis Of Wide-Field-Of-View Lens Captures, Andrew Murphy, Giovanni C. Decapua, Anthony M. Cafiso, Max E. Raabe, Kaden E. Van Leuven

Discovery Day - Daytona Beach

WFOV lenses are becoming popular in facial recognition due to the fact that they enhance subject coverage and improve the chances of detecting target faces. However, wide-angle optics introduce nonlinear distortion around the image periphery, which degrades the performance of recognition pipelines. In this poster presentation, we use WFOV lens captures to analyze facial recognition using classical low-complexity algorithms based on the discrete Fourier transform (DFT), discrete cosine transform (DCT), principal component analysis (PCA), and data-driven learning with convolutional neural networks. Finally, we present computational efficiency, compression, accuracy, and precision of recognizing distorted images with qualitative and quantitative measures.

A Cyber-Physical Flight Simulation Platform For Real-Time Visualization Of Aircraft Dynamics And Sensor-Based Control, Gabriel Martinez, Michael Poinsett

Discovery Day - Daytona Beach

Understanding aircraft dynamics through traditional simulations can be limiting, as results are often confined to screen-based visualization. This project aims to enhance learning and experimentation by creating a system where aircraft motion can be both simulated and physically observed in real time. The primary objective is to develop a cyber-physical flight simulation platform that links mathematical models with physical hardware. The system is designed to (1) represent aircraft dynamic behavior through real-time motion and (2) provide a foundation for integrating sensors and control strategies for responsive flight behavior. The platform combines aircraft dynamic models with a hardware interface capable of …

Ai Cyber First Responders: Bottleneck Analysis Of Heterogeneous Cpu–Gpu Pipelines For Security Operations Center Triage, Christine Pierce

Harrisburg University Other Works

Abstract — Modern Security Operations Centers (SOCs) must continuously process massive volumes of heterogeneous security telemetry while meeting stringent throughput, latency, and operational continuity requirements. Although transformer-based artificial intelligence has significantly improved threat detection and alert prioritization, most cybersecurity research evaluates model accuracy rather than the end-to-end behavior of AI-enabled operational pipelines. Consequently, relatively little is known about how heterogeneous CPU–GPU coordination, scheduling overhead, memory movement, and synchronization collectively influence operational SOC performance. This paper presents the AI Cyber First Responder, a heterogeneous SOC triage architecture that integrates GPU-accelerated transformer inference with CPU-based doctrine-driven reasoning to investigate end-to-end pipeline behavior …

Designing Under Pressure: A Comparative Study Of Ai And Manual Interface Development In A Naval Weapon System Scenario, Tsimur Babakhanau, Noah Clark, Colby Keller, Mary Grace Sorenson, Zoe Tiede

Discovery Day - Daytona Beach

This study implements a detailed naval scenario in which participants acted as operators on a Navy destroyer equipped with a Laser Weapon System (LaWS). Their task was to create a dashboard capable of stopping incoming suicide drone swarms while managing critical laser functions such as thermal constraints, threat prioritization, and adapting to attack dynamics. Poor management could leave the ship vulnerable. AI is increasingly integrated into design methods, fundamentally transforming the process of building user interfaces by compressing hours of work into minutes. Although AI design tools are becoming more common, little is known about how well beginners can use …

Ubuntu Signs: A Tool For Real-Time Translation Of South African Sign Language, Simone Beets, Hasita Rama

African Conference on Information Systems and Technology

Deaf and Hard-of-Hearing (DHH) individuals often face communication challenges with people who do not understand sign language. Existing systems lack support for South African Sign Language (SASL) and are limited in accessibility, efficiency and accuracy. This paper introduces Ubuntu Signs, a mobile prototype tool for real-time SASL translation using a camera-based interface and machine learning. The tool uses two models to recognize gestures: a static model for alphabetical and numerical gestures and a dynamic model for continuous gestures representing words and phrases. A preliminary user study evaluated the effectiveness, efficiency, accuracy and satisfaction of Ubuntu Signs. Results indicated high usability …

Robbed With Permission: Toward A Receiver-Consent Architecture For Trust-Preserving Mobile Money Transactions In Africa, Raphael Amponsah

African Conference on Information Systems and Technology

Mobile money transacted more than USD 2 trillion globally in 2025 across 2.3 billion registered accounts, with Sub-Saharan Africa holding over half of all accounts and two-thirds of transaction value. Between 58 and 72 percent of mobile money fraud on the continent exploits trust rather than technology, yet current security architecture authenticates the sender and merely notifies the receiver, leaving the transaction execution moment structurally unguarded. This paper introduces the Receiver-Consent Transaction Protocol (RCTP), a USSD-native protocol requiring the receiver's active PIN consent on their physical SIM before any credit completes, grounded in Design Science Research with Routine Activity Theory …

A Maintainable Extensible And Performant Compiler Toolchain For The Trustguard Architecture, Ethan N. Emery

Master's Theses

TrustGuard is a hardware architecture implementing a CAVO (Containment Architecture with Verified Output) model, which provides security guarantees by bootstrapping trust of a system to a hardware component known as the Sentry. Rather than verifying an entire system, TrustGuard re-executes trusted computation on the Sentry and validates the host system's execution before allowing values to pass to the outside world, thereby containing the effects of erroneous computation. Implementing this architecture in practice without hardware modifications to a host CPU requires a compiler toolchain capable of automatically generating instrumented binaries for both the untrusted host and the trusted Sentry from C …

Hyperchaotic Noise Generation For Adversarial Encryption In Privacy-Preserving Image Classification, Neeraja Beesetti

Master's Theses

Artificial intelligence systems make useful predictions by taking in data and returning a classification, recommendation, or decision. Obtaining that prediction, however, requires sharing the data first. This creates a fundamental privacy challenge in machine learning: users must expose their data to receive a valuable prediction. Machine learning systems increasingly rely on cloud-based image classification for this reason, transmitting images from edge devices to remote servers rather than running large models locally. This creates a conflict between the accuracy a classifier requires and the privacy a data owner wants. Traditional encryption destroys the image structure on which a classifier depends, while …

Improving Collective Aggregation Strategies For Hpc And Ai Workloads, Mikaila J. Gossman

All Dissertations

Modern high-performance computing (HPC) and artificial intelligence (AI) workloads increasingly generate data at rates that outpace the storage systems responsible for persisting it. While computational throughput has scaled dramatically through parallel processors, GPUs, and specialized accelerators, storage systems have improved far more slowly. As such, application performance is increasingly limited by the ability to move data efficiently through deep, heterogeneous storage hierarchies rather than by raw computational capability. This dissertation investigates how aggregation and data movement strategies must be redesigned to close this gap, addressing four central challenges: resource contention between foreground computation and background I/O, the fine-grained and irregular …

Developing A Rapid Urban Forest Assessment System For Sustainable City Greenification, Daniel Gonzalez

Master's Theses

This thesis presents the Rapid Urban Forest Assessment (RUFA) system, a web-based platform that integrates urban tree inventories and aerial tree detection to assess forest health across California’s census-designated places. RUFA combines inventoried tree records with coordinates detected from high-resolution multispectral imagery using convolutional neural networks, then computes a composite RUFA Score from four metrics: canopy cover percentage, trees per capita, tree diversity (TD-50), and tree evenness. The thesis addresses two engineering challenges in building the dashboard: querying and aggregating over seven million tree records in real time, and rendering spatial summaries at multiple zoom levels without recomputing cluster assignments …

Developing A Natural Language Interface For Knowledge Graphs, Ruth Assefa, Sarah Mendoza, Luke Voinov, Oyku Serap Ogut, Nurcan Yuruk

SMU Journal of Undergraduate Research

This paper proposes to solve the challenge of making databases more user-friendly by interfacing them with OpenAI's ChatGPT-3.5 model. We implemented this solution to assist researchers in easily finding others with similar research interests. Our study involves 184 researchers from 14 departments at Southern Methodist University (SMU). We collected researchers' areas of expertise and biographies and stored them in a Neo4j graph database. We used OpenAI's embedding models to create vector representations of the collected data, allowing for accurate similarity assessments via Neo4j's built-in algorithms. By integrating this system with LangChain, we enabled natural language queries. The results demonstrated high …

Singulars: Performing The Reverse Turing Test, Halim Madi

ELO (un)supervised 2026

Singulars is an ongoing series of performance systems in which I co-create poetry with a language model trained on an anthology of English poetry alongside my own writing. Across three works—carnation.exe, versus.exe, and reinforcement.exe—I stage live reinforcement loops in which my poems and the model’s responses compete for audience votes. The audience functions as an embodied feedback mechanism, shaping the evolution of both the machine and the human poet in real time.

This paper examines what happens when a poet becomes both author and training data. Drawing from creativity research, metacognition, and social cognition, I reflect …

System Integration And Validation Of The Cal Poly Spacecraft Attitude Dynamics Simulator Mk. Iv, Bricen S. Rigby

Master's Theses

The Cal Poly Spacecraft Attitude Dynamics Simulator (SADS) is an ongoing project that seeks to enable the simulation and validation of sensors, actuators, and control logic related to spacecraft attitude control. The SADS platform rests atop a spher- ical air-bearing device which allows for nearly frictionless rotation in all three axes. The orientation of the platform is controlled by four reaction wheels arranged in a pyramidal configuration. Over the past few years, there have been significant updates to the reaction wheel subsystem, as well as requests for a more capable central com- puter. Therefore, a new system architecture for the …

A Machine-Learning-Based Systematic Framework For Modeling Compression And Recompression Indices For Florida Soils, Michael Morales

Doctoral Dissertations and Master's Theses

This thesis develops a machine-learning framework for estimating the compression index and the recompression index of Florida soils from routinely measured index properties, and reports two studies that build it. Consolidation settlement design requires both indices, and both are obtained from the incremental-loading oedometer test, which occupies a specimen for one to two weeks; the index tests that accompany it are complete within hours. Empirical correlations have filled that interval since the 1950s, but their coefficients are calibrated on specific soil populations and transfer poorly between regions. The first study analyzes 376 consolidation tests compiled for the Florida Department of …

Improving Urban Search And Rescue Team Coordination Through Adaptive Context Awareness, Daniel Reyes Duran

Doctoral Dissertations and Master's Theses

Modern multi-agent Urban Search and Rescue (USAR) operations heavily rely on mobile geospatial Common Operating Pictures (COPs) to maintain team coordination and Situational Awareness (SA). However, the proliferation of high-frequency sensor telemetry at the tactical edge has introduced a data saturation paradox challenge: while information theoretically drives informed decision-making, unmanaged data surges induce increased operator cognitive overload and alert fatigue on mobile End-User Devices (EUDs), while downstream data-broadcasting models inherently strain edge processing and viewport environments.

To resolve these constraints, this dissertation presents a context-aware Value of Information (VoI) data-management framework integrated directly with a custom, event-driven Android Team Awareness …