Biomedical Engineering and Bioengineering Commons^™

Enhancing Mobility And Independence Of Wheelchair Users, Briar Blake, Paul Nauleau

Interdisciplinary Design Senior Theses

Conditions as simple as a leg fracture or more severe impairments such as paralysis and stroke may confine a person to a wheelchair. Wheelchairs help people with limited mobility transport themselves to different locations, but do not help the person leave the wheelchair. Users would need to do this to enter a car, use the restroom, take a shower, and sit at a table comfortably with family. The following design is a wheelchair attachment that serves to provide the user with increased mobility and independence. Wheelchair users struggle to get into and out of their chairs due to the unassisted …

The Human Keyboard, Derek Char, Thomas Chung, Alexander Mckee, Allen Pai

Interdisciplinary Design Senior Theses

Most products that implement features for user interactions utilize buttons or switches for the user to command to select actions to perform. Such designs are typically controlled with direct motions, such as touch or voice and are seldom designed in consideration of those unable to utilize direct control. In this project, we designed technology that reads naturally occuring biosignals from the body, which then can be apply those signals with any interface. For our specific application in this project, we decided to implement a keyboard. Instead of teaching the fingers how to type on a mechanical keyboard, the body can …

Cervis: Cervical Cancer Early Response Visual Identification System, Evangelia Bouzos, Ivy Fernandes, Marina Predovic

Bioengineering Senior Theses

Our goal is to make a positive impact in the cervical cancer diagnostic space through the development of an accurate, cost effective solution that enables women in low resource settings to test for cervical cancer on a frugal and effective platform. In developed countries, we rely on regular preventive care, such as pap smears, to identify any cellular abnormalities that may indicate the disease state. However, due to the high cost and laboratory requirements of this procedure, women in low resource settings typically do not have access to this procedure. Since they are not regularly screened and often have little …

Engineered Living Nanoparticles For The Treatment Of Inflammatory Diseases, Annie Brown, Alex Campanelli, Adarsh Tantry

Bioengineering Senior Theses

Rheumatoid arthritis (RA) is a widespread, debilitating autoimmune disease characterized by painful inflammation of the joints. Current treatments for RA are either ineffective, expensive, or have undesirable effects, such as an adverse immune response. To mitigate these effects, we have designed an exosome-based treatment for inflammation. We chose to utilize exosomes for their longer half-life in the body, better penetrative capacity, and biocompatibility, thus improving upon previous RA treatments. To do this, we created a stable cell line to produce exosomes modified at the surface to express a tumor necrosis factor receptor (TNFR), which possesses the ability to act as …

Meshr: A Modular, Economical Skin Graft Hand Roller, Maggie Alt, Josée Fournier, Madeline Krenek, Will Paton

Bioengineering Senior Theses

In South Africa and around the world, the rates of severe burns are a significant health issue. Skin grafts are used to improve the function and appearance of the burned area and reduce the amount of time a patient is in the hospital. To minimize the amount of skin needed and maximize the coverage of the graft, the harvested sample is meshed in a lattice pattern so it can expand and graft a much larger surface area. Unfortunately, the current methods and devices used in both high and low-income countries have been optimized for hospitals with larger budgets and more …

Milkguard: Low-Cost, Polymer-Based Sensor For The Detection Of Escherichia Coli In Donated Human Breast Milk, Maggie May, Nicholas Kikuchi, Matthew Zweber

Bioengineering Senior Theses

Breast milk, the gold standard for infant nutrition, could prevent up to 13% of child deaths worldwide. However, many mothers are unable to breastfeed due to health conditions and other factors. Because of this, a network of more than 500+ human milk banks, which collect and distribute donated breast milk to infants, have emerged worldwide. However, operational costs to ensure the safety of this milk remain time-intensive and costly.

There are no existing diagnostics for rapid and on-site detection of bacterial contaminants in donated milk. Currently, many milk banks send samples to outside laboratories for bacterial culturing tests, which take …

Development Of Stable Cell Lines For The Production Of Hematopoietic Stem Cell Targeted Exosomes, Anja Beard, Zach Ehlinger

Bioengineering Senior Theses

Exosomes represent a promising new approach to targeted drug delivery. Current research explores the ability of these naturally occurring nanoparticles to transport therapeutic cargo to specific tissues of the body and to subsequently enter the cells of those tissues. Human cells act as an efficient source of these nano-vesicles. Our project ultimately focuses on the establishment of a cell line that produces exosomes tagged with the RD114 protein, which allows for the targeting of hematopoietic stem cells. With the ability to deliver therapeutic cargo to these specific cells, exosomes can serve as a vehicle for many effective hematopoietic stem cell …

Unsupervised Parkinson’S Disease Assessment, Alexander S. Adranly, Senbao Lu, Yousef Zoumot

Interdisciplinary Design Senior Theses

Parkinson’s Disease (PD) is a progressive neurological disease that affects 6.2 million people worldwide. The most popular clinical method to measure PD tremor severity is a standardized test called the Unified Parkinson’s Disease Rating Scale (UPDRS), which is performed subjectively by a medical professional. Due to infrequent checkups and human error introduced into the process, treatment is not optimally adjusted for PD patients. According to a recent review there are two devices recommended to objectively quantify PD symptom severity. Both devices record a patient’s tremors using inertial measurement units (IMUs). One is not currently available for over the counter purchases, …

Engineering Synthetic Antibody For Prostate Cancer Detection, Kimberley Gonzalez, Tatum Prosswimmer, Cassandra Stawicki

Bioengineering Senior Theses

This Senior Design project seeks to manufacture an E. Coli based antibody for prostate cancer detection using unnatural amino acid incorporation. Current diagnostic techniques take advantage of the high binding specificity of monoclonal antibodies to detect the concentration of prostate specific antigen (PSA) in a blood sample. Production of this technology is lengthy and costly, while simultaneously incurring countless ethical problems related to animal welfare and accessibility. This project proposes a synthetic antibody that can be produced efficiently in single E. Coli cells and exhibits complementary binding to PSA. By incorporating an unnatural amino acid into a recombinant peptide sequence, …

Hands-Free Wearable Crutch, Cooper Schwabe, Marcus Kraus, Tk Wasserman

Bioengineering Senior Theses

Traditional crutches have long been the primary mobility aid for patients with a lower-leg injuries. However, forced to place most of their weight on their hands and underarms while balancing on only one leg, users find that such crutches present a physically demanding, uncomfortable, and inconvenient means of getting around. To combat these issues, we propose a hands-free crutch that will attach only to the injured leg, increasing maneuverability while preserving natural walking mechanics. Within the last decade, other hands-free crutch solutionshave proven to increase user satisfaction by reducing fatigue, increasing safety and efficiency by allowing users to perform additional …

Machine Learning Provides Predictive Analysis Into Silver Nanoparticle Protein Corona Formation From Physicochemical Properties, Matthew R. Findlay, Daniel N. Freitas, Maryam Mobed-Miremadi, Korin E. Wheeler

Bioengineering

Proteins encountered in biological and environmental systems bind to engineered nanomaterials (ENMs) to form a protein corona (PC) that alters the surface chemistry, reactivity, and fate of the ENMs. Complexities such as the diversity of the PC and variation with ENM properties and reaction conditions make the PC population difficult to predict. Here, we support the development of predictive models for PC populations by relating biophysicochemical characteristics of proteins, ENMs, and solution conditions to PC formation using random forest classification. The resulting model offers a predictive analysis into the population of PC proteins in Ag ENM systems of various ENM …

Engineering A Molecular Missile For Pancreatic Cancer Detection: Vector Design, Sophia Castillo, Zhiwen Zhang

Helene Lafrance Library Undergraduate Research Award

Pancreatic cancer, though rare, is expected to be the second-leading cause of cancer-related death by 2030 (Rahib et al., 2014). CA 19-9 is currently the most widely used biomarker for pancreatic cancer detection, but detection of CA 19-9 relies on the use of monoclonal antibodies, a technology that entails an expensive, lengthy, and ethically problematic manufacturing process. This paper presents the design of a DNA vector that can be used to program E. coli to produce a “molecular missile” that targets CA 19-9. Through the site-specific incorporation of an unnatural amino acid (L-DOPA), this peptide can be engineered to bind …

Machine Learning Offers Predictive Insight Into The Silver Nanomaterial Protein Corona, Matthew Findlay

Bioengineering Senior Theses

The use of engineered nanomaterials (ENMs) in consumer and commercial products is increasing rapidly. The small size and high surface reactivity of ENMs gives them a range of attractive properties, and allows them to be incorporated into various materials. These properties make ENMs very appealing to modern industry, but also make ENMs toxic, causing serious health and environmental concerns. This toxicity is largely driven by the formation of a protein corona on the surface of ENMs. This protein corona is caused by proteins encountered in biological systems that bind to the surface of (ENMs). Despite the importance of the protein …

Exosome Membrane Bound Tnf-Receptor For The Treatment Of Rheumatoid Arthritis, Natalie Duong, Kevin Curley

Bioengineering Senior Theses

Rheumatoid arthritis (RA) is an autoimmune disease that causes painful inflammation of the synovium of the patient’s joints. However, current treatments for RA have a variety of drawbacks. They often are ineffective, expensive, invasive, risky, cause an immune response, and/ or only provide short term relief. Thus, we developed a new treatment for preventing inflammation: TNF-receptors anchored onto exosome surfaces. Exosomes are nanovesicles that are naturally secreted by most of the cells in our bodies. The many benefits of using exosomes include non-immunogenicity, natural stability in the body, and non-invasiveness. We have demonstrated that exosome membrane bound TNF-receptors have the …

Portable, Powerless Automation Of Valve Actuation For Microfluidic Large Scale Integration Technology, Andrew Schmidt, Matthew Fitzgerald

Bioengineering Senior Theses

Microfluidic large-scale integration (mLSI) is an emerging field that has the potential to fully automate the biological experimentation and technology development. mLSI offers high-throughput, while maintaining reduced costs and sample size in biochemical tests and experiments. The pneumatic control systems, and the use of solenoid valves that are needed for mLSI make this technology bulky and limits its use to specialized labs. Moreover, since the field is relatively new, few scientists are trained in microfluidic chip design and microfabrication. Eliminating the peripheral equipment from standard testing protocol will allow mLSI to be used in point-of-care settings and more widespread usage …

Exploration Of Sortase A-Inhibitor Binding Mechanisms Through Isothermal Titration Calorimetry, Eddy Liu

Bioengineering Master's Theses

The enzyme Sortase A plays a critical role in the virulence of gram-positive bacteria, facilitating their ability to attach to and infect host tissues. Because of its accessible location on the surface of bacteria and in light of the emergence of antibiotic-resistant bacterial strains, Sortase A has become an important target for novel drugs and their associated research. Here we investigate the thermodynamic characteristics and binding mechanism of Sortase A and inhibitors using isothermal titration calorimetry. The results support a two-step, sequential binding mechanism involving induced fit and conformational change. We recommend that further studies involving other small molecule inhibitors …

Phosphate Contaminant Detection In Water Through A Paper-Based Microfluidic Device, Brandon Miura, Alex Wagner, Philip Wu

Bioengineering Senior Theses

This report describes a project aimed at developing a low-cost, portable, on-site, user-friendly system for detecting different concentrations of phosphate in drinking water. Phosphate is a natural chemical, but toxic in large concentrations; detection is therefore important to avoid drinking contaminated water. Despite this fact, no cheap, and/or nontoxic system for phosphate detection is yet on the market.

The detection system utilizes a paper-based microfluidic device to automate the electrochemical detection process, which normally requires expert use of lab equipment. When combined with a portable potentiostat that works with a mobile app, the device will allow untrained users to determine …

Vital Sensory Kit For Use With Telemedicine In Developing Countries, Alejandra Pacheco, Jose Hernandez, Antonio Maldonado-Liu, Natalie Arrizon

Interdisciplinary Design Senior Theses

In many developing countries, a large percentage of the population lacks access to adequate healthcare. This is especially true in India where close to 70% of the population lives in rural areas and has little to no access to hospitals or clinics. People living in rural India often times cannot afford to pay to see a doctor should they need to make the journey to a hospital. Telemedicine, a breakthrough in the past couple decades, has broken down the barrier between the patient and the physician. It has slowly been implemented in India to make doctors more available to patients …

Engineering Synthetic Antibody By Expanded Genetic Code, Elizabeth Batiuk, Tracy Nguyen, Casey Kiyohara

Bioengineering Senior Theses

Antibodies are extensively used in research for diagnostic and therapeutic purposes because of their unrivaled specificity and biomarker binding strengths.1 Currently, monoclonal antibodies are most commonly used because of their production consistency and purity.1 However, there are significant ethical and economic challenges associated with producing monoclonal antibodies.¹ Synthetic antibodies provide a promising alternative to monoclonal antibodies in both clinical and research applications.²

Our proposed synthetic antibody system incorporates 3,4-dihydroxy-l-phenylalanine (L-DOPA), an unnatural amino acid used to increase binding affinity, into a peptide sequence specific for the prostate specific antigen (PSA), a biomarker for prostate cancer. This addition is …

Droplet-Microfluidic Device For The Characterization Of Perfluorinated Emulsions, Daniel Horvath, Nam Ahn Tran

Bioengineering Senior Theses

Microfluidics is being used throughout academia and industry today to perform large numbers of experiments with extremely small volumes of fluids. By doing this, those that study microfluidics hope to raise through-put, lower cost and limit the environmental impact of scientific research.2 Complementing the increased use of microfluidics, the use of perfluorinated emulsions in the field of droplet-based microfluidics is also experiencing large growth.3 However, many of the products available today are either proprietary and/or poorly understood. While some chemical structures are known, some of the most scientifically intriguing perfluorinated oils and surfactants do not have their chemical structures or …

Effect Of Crosslinker Length On The Elastic And Compression Modulus Of Poly(Acrylamide) Nanocomposite Hydrogels, Josergio Zaragoza, A. Chang, Prashanth Asuri

Bioengineering

Polymer hydrogelshave shown to exhibit improved properties upon the addition of nanoparticles; however, the mechanical underpinnings behind these enhancements have not been fully elucidated. Moreover, fewer studies have focused on developing an understanding of how polymer parameters affect the nanoparticle-mediated enhancements. In this study, we investigated the elastic properties of silica nanoparticle-reinforced poly(acrylamide) hydrogels synthesized using crosslinkers of various lengths. Crosslinker length positively affected the mechanical properties of hydrogels that were synthesized with or without nanoparticles. However the degree of nanoparticle enhancement was negatively correlated to crosslinker length. Our findings enable the understanding of the respective roles of nanoparticle and …

Enhancing Student Usability Of 3d Bioprinting, Andrew Chang, Sabrina Cismas

Interdisciplinary Design Senior Theses

3D bioprinting is an emerging technology that is changing the face of tissue engineering through the ability to print cells, scaffolding and matrix materials, and other bioactive reagents. 3D bioprinters are a culmination of various scientific and engineering disciplines with respect to their operation and bioprints, and as such, offer a prime case study on the convergence of the technical fields in research. In order to capitalize on this fact and make 3D bioprinting more accessible for interdisciplinary education applications, we sought to translate 3D bioprinting into the classroom environment as a tool for education. In collaboration with SE3D Education, …

Intracranial Pressure Sensor, Matthew Murray, Jared Shimada

Bioengineering Senior Theses

Idiopathic Intracranial Hypertension (IIH) also known as Pseudotumor Cerebri is a condition resulting from an increase of Cerebrospinal Fluid (CSF), a fluid that helps to protect the brain and spinal cord, in the cranial cavity. Currently the only treatment method for this health condition is the draining of the fluid via implanted intracranial shunts that get clogged in approximately 50% of patients. Clogged shunts can only be detected when IIH symptoms begin to reappear. We propose to create an ultrasound-read intracranial pressure sensor used to supplement shunts implanted in patients who suffer from Idiopathic Intracranial Hypertension. This will provide immediate …

Bolstering The Cell Membrane Of S. Cerevisiae For Efficient Bioethanol Production From Lignocellulosic Biomass, Conary Meyer, Matt Kubit

Bioengineering Senior Theses

With the need for alternatives to fossil fuels becoming more prevalent, biofuels has become an increasingly attractive alternative. Traditional biofuel production was quickly halted as a result of its ethical complications, leading to the development of secondgeneration biofuels. This system utilizes plant waste instead of food as its starting material, allowing for rapid recycling of this widely available and cheap carbon source. This switch was, however, coupled with complications. Of those, the most prominent is the inevitable release of acetic acid resulting from the breakdown of the lignocellulosic waste. This acetic acid is challenging to neutralize or extract in a …

Preclinical Study For Targeted Breast Cancer Therapy, Katie Bond, Lauren Mccormick, Jordan Karroll

Bioengineering Senior Theses

Cancer is a devastating disease which affects millions. For this reason, many scientists are working to develop drugs that can specifically target cancer cells within the body. Preclinical trials are an important phase in the drug development process, as they allow scientists to determine whether or not a drug candidate may be viable for human use. Targeted therapies can be achieved by using monoclonal antibodies as well as small molecule drugs. In this study we compared the effects of two control monoclonal antibody drugs, “mAb1” and “mAb2,” with one small molecule drug, “Drug S,” on the MDAMB231 human breast cancer …

Suture Passing Device For Hyoid Susupension In Sleep Apnea Surgery, Corbin Craven, Nicholas Leavengood, Solomon Mulugeta

Bioengineering Senior Theses

Obstructive Sleep Apnea (OSA) is a condition which is characterized by momentary pauses in a person’s breathing while they are sleeping. Current treatment options for sleep apnea include CPAP, oral appliances, and surgery. Of these options, hyoid suspension surgery is one of the most effective, but is significantly underutilized. This is due to the fact that performing hyoid suspension surgery by current methods is complicated and can be painful for the patient. As our senior design project, we designed and prototyped a novel medical device that facilitates fast, easy, and consistent hyoid suspension surgery. Through functional testing of our device …

Microfluidic Detection Of Biogenic Amines, Trenton Nagasawa, Partha Vora, Nnaoma Agwu, Joshua Tan

Bioengineering Senior Theses

For our study of Microfluidic Detection of Biogenic Amines, we have designed a microfluidic device to separate and detect different biogenic amine concentrations using amperometric detection. The goal of this project is to identify and quantify biogenic amines form the neural fluid extracted from the pericardial cavity of the Jonah crabs (Cancer Borealis). The device that we designed utilizes polydimethylsiloxane (commonly known as PDMS) along with a carbon paste electrode and a palladium decoupler. Using capillary electrophoresis (CE) along with amperometric detection, we aim to separate biogenic amines and detect them with amperometric detection.

Design And Validate A Synthetic Circuit For Detecting Pathway Signaling In Mammalian Cells, Darisha Jhutty, Nicholas Parker

Bioengineering Senior Theses

Synthetic circuits provide novel ways for scientists to program and probe mammalian cell behavior. This allows for enhanced research tools and chemical sensors. Our project works with an engineered synthetic circuit and monitors the output of the circuit using green fluorescent protein( GFP) and luciferase. Expression of GFP is both quantifiable and observable over a time period in living cells. Luciferase can be detected by an assay in lysed cells to give data on overall expression of the circuit. By measuring and comparing output of this circuit over time, we can create a model to demonstrate the lack of expression, …

Exosome Engineering And Imaging, Joseph Losacco, Sophie Mcdevitt, Zachary Stickney

Bioengineering Senior Theses

There are many new pharmaceuticals being developed for the treatment of various diseases. One of the major issues these drugs face is the ability to enter a cell or the area of treatment. The current methods for drug delivery are often arduous to complete and do not make it to the diseased area because they are targeted by the immune system. In order to improve the ability for drugs to reach the desired area we propose the use of exosomes. Exosomes are subcellular vesicles that are responsible for the transport of biomaterials or signals within the cell and to other …

Aptamer Based Hybrid-Assay For Early Stage Disease Diagnosis, Riley S. Parsons, Mari A. Ueno

Bioengineering Senior Theses

The objective of the project is to use aptamers, oligonucleotides designed to selectively bind target molecules, to develop a methodology for building an enzyme-linked aptasorbent assay (ELASA). This assay is designed to detect the presence of a target protein nucleolin that is overexpressed on the surface of cancer cells, and it would act as a novel diagnostic method for the disease. The success of our project would also confirm the feasibility of using an ELASA as a diagnostic tool to detect the presence of thrombospondin-1 (TSP-1), a protein known to experience glycosylation changes in human endometrioid ovarian cancer tissue. Our …