Engineering Commons^™

The Santa Clara, 2013-10-10, Santa Clara University

The Santa Clara

No abstract provided.

The Santa Clara, 2013-10-03, Santa Clara University

The Santa Clara

No abstract provided.

Reasoning Across Language And Vision In Machines And Humans, Andrei Barbu

Open Access Dissertations

Humans not only outperform AI and computer-vision systems, but use an unknown computational mechanism to perform tasks for which no suitable approaches exist. I present work investigating both novel tasks and how humans approach them in the context of computer vision and linguistics. I demonstrate a system which, like children, acquires high-level linguistic knowledge about the world. Robots learn to play physically-instantiated board games and use that knowledge to engage in physical play. To further integrate language and vision I develop an approach which produces rich sentential descriptions of events depicted in videos. I then show how to simultaneously detect …

An Analysis Of The Impact Of Storage Temperature, Moisture Content & Duration Upon The Chemical Components & Bioprocessing Of Lignocellulosic Biomass, Arun Athmanathan

Open Access Dissertations

The successful utilization of lignocellulosic biomass as a feedstock for fuels and chemicals necessitates storage for 2-6 months. It is correspondingly important to understand the impact of storage parameters - moisture concentration, temperature and duration - on biomass quality.

As aerobic storage is the most viable large-scale solution, aerobic storage experiments were carried out with three projected bioenergy feedstocks - sweet sorghum (Sorghum bicolor) bagasse, corn (Zea mays) stover and switchgrass (Panicum virgatum). Stored samples of each were examined for dry matter loss and composition change to develop a material balance around carbohydrates and lignin.

A mean dry matter loss …

Hybrid Opto-Electrokinetic Technique For Micro/Nanomanipulation: Towards Application Of A Novel Non-Invasive Manipulation Technique In Microbiological Assay, Jae-Sung Kwon

Open Access Dissertations

This dissertation explores various physical mechanisms of the Rapid Electrokinetic Patterning (REP) technique suggested for rapid and precise on-chip manipulation of colloids and fluids, and bio-compatibility of the technique for biological applications. REP is a hybrid opto-electrokinetic technique that is driven by the simultaneous application of an AC electric field and a heating source. It can not only effectively transport and manipulate a fluid but also concentrate and pattern particles suspended in the fluid through the combined effect of an electrohydrodynamic flow, electrostatic colloidal interactions and an electrothermal microfluidic flow. These capabilities make REP a promising tool which can provide …

Formulation To Predict Lower Limb Muscle Forces During Gait, Gil Serrancolí, Jonathan P. Walter, Allison Kinney, A. Barjau, Benjamin J. Fregly, Josep M. Font-Llagunes

Mechanical and Aerospace Engineering Faculty Publications

The human body has more muscles than Degrees of Freedom (DoF), and that leads to indeterminacy in the muscle force calculation. This study proposes the formulation of an optimization problem to estimate the lower-limb muscle forces during a gait cycle of a patient wearing an instrumented knee prosthesis. The originality of that formulation consists of simulating muscle excitations in a physiological way while muscle parameters are calibrated. Two approaches have been considered. In Approach A, measured contact forces are applied to the model and all inverse dynamics loads are matched in order to get a physiological calibration of muscle parameters. …

Effects Of Dip-Coated Films On The Properties Of Implantable Intracortical Microelectrodes, Salah Sommakia

Open Access Dissertations

The successful clinical use of implantable intracortical microelectrodes (ICMs) to treat certain types of deafness, blindness, and paralysis is limited by a reactive tissue response (RTR) of the brain. This RTR culminates in the formation of a tight glial scar and a loss of neuronal density around implanted ICMs, and is accompanied by a decrease in signal to noise ratio and an increase in impedance. While no comprehensive mechanistic understanding of the underlying biology is currently agreed upon in the field, a general consensus exists around a highly volatile acute RTR phase. During this acute phase, the electrical properties of …

Using X-Ray Imaging Techniques To Determine Density Of Foods, Shivangi Mohan Kelkar

Open Access Dissertations

Density depends on the experimental technique and structural properties of food. True, apparent and bulk are different types of densities. For porous foods such as baked food products and complex food systems, accurate measurement of density is challenging. Empirical correlations dependent on composition and temperature exist to calculate true density. Thus if composition and apparent density are known, porosity can be calculated, porosity = [1 - (apparent density/ true density)]. Various non-destructive diagnostic tools have been employed to study food microstructure. Among these, computed tomography (CT) and digital radiography (DR) utilizing x-ray imaging showed greater capability for evaluation of food …

Ozonation Systems As A Non-Chemical Alternative For Stored Grain Protection, Carlos A. Campabadal

Open Access Dissertations

The use of ozone as a non-chemical alternative in stored grain protection was studied by conducting scale-up demonstrations using a fixed bed ozonation system and developing a semi-continuous counterflow and a continuous flow ozonation treatment system. The objectives of this research were to determine the efficacy of ozonation to control insect pests without affecting end-use quality; to prove the concept of the semi-continuous counterflow ozonation system to ozonate grain at a faster rate and quantify its effect on mold growth reduction; to evaluate the efficacy of a modified screw conveyor for pest control by treating grain in a continuous-flow ozonation …

Effects Of Hearing Aid Amplification On Robust Neural Coding Of Speech, Jonathan Daniel Boley

Open Access Dissertations

Hearing aids are able to restore some hearing abilities for people with auditory impairments, but background noise remains a significant problem. Unfortunately, we know very little about how speech is encoded in the auditory system, particularly in impaired systems with prosthetic amplifiers. There is growing evidence that relative timing in the neural signals (known as spatiotemporal coding) is important for speech perception, but there is little research that relates spatiotemporal coding and hearing aid amplification.

This research uses a combination of computational modeling and physiological experiments to characterize how hearing aids affect vowel coding in noise at the level of …

Research: South Dakota State University, Fall 2013, Chrisite Delfanian, Eric Landwehr

State of Discovery South Dakota State University's Research Magazine

CONTENTS:

Breaking Waves: Study of breaking waves relevant for lake shorelines [Page] 2
Poetic imagery rooted in research [Page] 3
Virus genome may hold key to better PRRS vaccine [Page] 4
Consumer survey examines savings behaviors, goals [Page] 4
Soybean meal may decrease fish production costs [Page] 5
Alternative fuel sources add value to SD products [Page] 6
International collaboration helps meet global demand for wheat [Page] 7
Commercialization requires big thinking [Page] 9
Young scientist develops software for cancer detection, image transmission [Page] 10
Nursing research to improve rural health care [Page] 11
New vaccine-delivery system targets influenza, cancer …

The Santa Clara, 2013-09-26, Santa Clara University

The Santa Clara

No abstract provided.

Sound And The Moving Image:Critical Characteristics For Spectator Response, Kara Rader, Rafeeq I. Roberts, Matt Egizii, Jeffery Allen

Undergraduate Research Posters 2013

The prevailing wisdom in the film and video production industries is that audio information outweighs visual information when it comes to spectator responses, but there are few empirical studies to support this claim. In previous research, four critical characteristics of sound have been identified: (1) Music, (2) visual/sound contradictions (defined as sound that is inconsistent with audience expectations based on visual information), (3) multi-channel sound, and (4) sound quality. Building on our previous research into music and film, we have found that many researchers have looked into the question of how music affects emotions (Eschrich et al., 2008; Have, 2008; …

Computational Optogenetics: Empirically-Derived Voltage- And Light-Sensitive Channelrhodopsin-2 Model, John C. Williams, Jianjin Xu, Zhongju Lu, Aleksandra Klimas, Xuxin Chen, Christina M. Ambrosi, Ira S. Cohen, Emilia Entcheva

Department of Biomedical Engineering Faculty Publications

Channelrhodospin-2 (ChR2), a light-sensitive ion channel, and its variants have emerged as new excitatory optogenetic tools not only in neuroscience, but also in other areas, including cardiac electrophysiology. An accurate quantitative model of ChR2 is necessary for in silicoprediction of the response to optical stimulation in realistic tissue/organ settings. Such a model can guide the rational design of new ion channel functionality tailored to different cell types/tissues. Focusing on one of the most widely used ChR2 mutants (H134R) with enhanced current, we collected a comprehensive experimental data set of the response of this ion channel to different irradiances and voltages, …

Role Of Programmed Proteolysis During Meiosis, Vincent Matthews, G. Valentin Borner Ph.D.

Undergraduate Research Posters 2013

Meiosis is the process which forms gametes and spores for reproduction in eukaryotic cells. During the pachytene phase of meiosis I, a protein structure, called the Synaptonemal Complex (SC), forms between homologous chromosomes and creates a scaffold for genetic recombination. In yeast, the Zip1 protein is a major structural component of the SC. At restrictive temperature for meiosis, ZIP1 is required for completion of meiotic divisions. At permissive temperature ZIP1 is required for proper chromosome segregation. We observed that chemical inhibition of the proteasome, with MG132, results in arrest at prophase of meiosis I. Based on these results, we questioned …

Bioavailable Lead In Topsoil Collected From General Aviation Airports, Jerry H. Kavouras, Randal J. Demik, Allison C. Hopkins

Biology Department Faculty Articles

Representatives of the aviation community are interested in determining the environmental effects of leaded fuel emissions from general aviation flight operations. Soil is an environmental sink for lead to accumulate over time. This study measured bioavailable lead concentrations in topsoil at three general aviation airports and at one site with no general aviation operations in order to determine if general aviation aircraft operations are contributing to the contamination of airport topsoil at levels that require remediation by law. Bioavailable refers to substances that organisms can absorb, because they have access to them. Topsoil was collected from refueling areas, run-up areas, …

Adaptation Of Scenedesmus Dimorphus To Brackish Water, Dustin Bowden, Joanne M. Belovich

Undergraduate Research Posters 2013

Microalgae is a promising biofuel feedstock for replacement of conventional transportation fuels. Microalgae does not require arable land for cultivation, and the biofuel production rate per acre of land is an order of magnitude greater than that needed for crop-based production methods. Though microalgae to biofuel processes are attractive, none have proven commercially successful due to the high costs of algae dewatering. Moreover, the scarcity of fresh water in many parts of the world prevents development of this process because of competition with drinking water supplies. Our lab has developed an efficient dewatering method using an inclined gravity settler. It …

Strengthening The Pathway To Stem Research Leadership At Hope College, Catherine Mader

Faculty Presentations

Over the past 20 years, awards from the Howard Hughes Medical Institute have supported Hope's efforts to conduct STEM research and to prepare students to pursue careers as STEM researchers. The current program is building upon prior successes to create a deliberate pathway for students as they enter Hope as novices, build STEM Researcher skills through coursework and summer research and eventually become student leaders in STEM Research groups.

Evaluating Satellite Products For Precipitation Estimation In Mountain Regions: A Case Study For Nepal, Nir Y. Krakauer, Soni M. Pradhanang, Tarendra Lakhankar, Ajay K. Jha

Publications and Research

Precipitation in mountain regions is often highly variable and poorly observed, limiting abilities to manage water resource challenges. Here, we evaluate remote sensing and ground station-based gridded precipitation products over Nepal against weather station precipitation observations on a monthly timescale. We find that the Tropical Rainfall Measuring Mission (TRMM) 3B-43 precipitation product exhibits little mean bias and reasonable skill in giving precipitation over Nepal. Compared to station observations, the TRMM precipitation product showed an overall Nash-Sutcliffe efficiency of 0.49, which is similar to the skill of the gridded station-based product Asian Precipitation-Highly Resolved Observational Data Integration Towards Evaluation of Water …

Biofuel From Microalgae – A Review On The Current Status And Future Trends, Rajee Olaganathan, May Zaw Htet, Lim Yan Ling, Sek Hui Yun

Publications

The constant reliance on fossil fuel energy resources is unsustainable, due to both depleting world reserves and increasing green house gas emissions associated with their use and thus there are dynamic research at the global level envisioned at developing alternative renewable and potentially carbon neutral solid, liquid and gaseous biofuels as alternative energy resources. The contemporary knowledge and technology predictions have proved that among the third generation biofuels especially those derived from microalgae are considered the best reasonable alternative energy resource compared to undeniable drawbacks of first and second generation biofuels. Moreover, its efficiency to sequester carbon from the atmosphere …

Life Support: Long Term Storage Of Solid Waste In An Enclosed Membrane System, Emmy O. Trieu, Michael Flynn, Rocco Mancinelli

STAR Program Research Presentations

In deep space missions, maintaining life support is of the utmost priority. In such a closed system, human waste must be stored and treated. Simulated feces (ersatz) will be inoculated with microbes representing normal fecal flora, mixed with urine brine and shredded refuse of products typically used in space missions. Composting methods often use alternating layers of waste with scraps of carboniferous materials (finely shredded refuse). By preparing membrane bags with a homogenized ersatz and carboniferous refuse mixture and membrane bags with alternating layers of ersatz and carboniferous refuse, it may be possible to monitor anaerobic thermophillic digestion of the …

Creating A Package In R, Brit Schneiders, Eric Archer

STAR Program Research Presentations

In a time of increasingly efficient technology and data production, scientists are producing data faster than it can be analyzed. Therefore, user accessibility to data analysis is becoming more and more critical. In general, researchers have a set of raw data and want an efficient means to their final analysis. A package serves as that means by creating a set of functions and making them accessible to the user. Often, a user has a small piece of code to run (a single R script, for example), and that script requires the use of certain functions, which are contained in a …

2013 Tsu Undergraduate Research Program, David Owerbach

Office of Research Institutional Research and Scholarship

No abstract provided.

Optimization Problem Formulation For Predicting Knee Muscle And Contact Forces During Gait, Gil Serrancolí, Jonathan P. Walter, Allison Kinney, Benjamin J. Fregly, Josep M. Font-Llagunes

Mechanical and Aerospace Engineering Faculty Publications

The human body has more muscles than degrees of freedom (DOF), which leads to indeterminacy in the muscle force calculation. In this study, an optimization problem to estimate the lower-limb muscle forces during a gait cycle of a patient wearing an instrumented knee prosthesis is formulated. It consists of simulating muscle excitations in a physiological way while muscle parameters are calibrated.

Network Dynamics Of Visual Naming, Christopher R. Conner

Dissertations and Theses (Open Access)

Recognition and naming of objects and actions are fundamental components of language. They involve several different systems working in coordination to accomplish a complex behavior. During visual naming, sensory and semantic processing are carried out by dedicated cortical substrates in the temporal and occipital lobes, while response selection and articulatory planning are handled by prefrontal cortex. Despite decades of research using lesion analysis, functional MRI and electro-encephalography, the precise dynamics involved remain unknown due to the inadequate spatio-temporal resolution of these methodologies. Of particular interest is the organization of semantic knowledge and the degree of serial and parallel organization of …

Juxtaposing Nasa’S Aeronet Aod With Carb Pm Data Over The San Joaquin Valley To Facilitate Multi-Angle Imaging Spectroradiometer (Misr) Pm Pollution Research, John Kanemoto

STAR Program Research Presentations

Airborne particulate matter (PM) has been shown to increase the risk for asthma, chronic bronchitis, cardiopulmonary complications, and respiratory cell membrane damage/infection/leakage. PM levels are currently analyzed from two perspectives: stationary land-based monitoring (LBM) sites and total Aerosol Optical Depth (AOD) atmospheric column measurements. Both perspectives often leave miles of space between measuring locations and will have a continually increasing cost from introducing/maintaining sites. The Multi-angle Imaging SpectroRadiometer (MISR) satellite team hopes to begin investigating/archiving PM levels comprehensively via inputting MISR AOD measurements into a function/model which predicts the amount of ground level PM.

In the future, multivariable spatial correlations …

Algae To Propellants: Biosynthesis Of 1,2-Propanediol From Algal Derived Sugars, Lauren Rachelle Merriman

Graduate Theses and Dissertations

Propylene glycol dinitrate (PGDN) is an important component used in the formulation of energetic materials. A renewable, environmentally-friendly and effective production technique for the production of 1,2-propanediol, an important precursor to PGDN, is desired. While fermentation of 1,2-propanediol has been achieved, it suffers from major limitations such as expensive feed sugars and relatively low yields. It is hypothesized that algae sugars could serve as a feedstock for the microbial synthesis of 1,2-propanediol, thereby reducing production costs and enhancing sustainability.

Algal biomass produced from an Algal Turf Scrubber® has proven to have significant potential as a source of fermentable materials. However, …

Efferent Copy And Corollary Discharge Motor Control Behavior Associated With A Hopping Activity, Wangdo Kim, António P. Veloso, Filipa João, Sean S. Kohles

Mechanical and Materials Engineering Faculty Publications and Presentations

Hoppers respond not only to stimuli from the ground surfaces but also to cues generated by their own behaviors. This leads to desensitization because although the afferent and reafferent signals have distinct causes, they are carried by the same sensory channels. From a behavioral viewpoint, it may be necessary to distinguish between signals from the two causes especially when monitoring changes in the external environment separate from those due to self-movement. We were able to separate afferent sensory stimuli from self-generated, reafferent signals using an action oriented perception system and dynamic programming approach. This effort addressed the question of how …

The Use Of Co-Culturing In Solid Substrate Cultivation And Possible Solutions To Scientific Challenges, Wanying Yao, Sue E. Nokes

Biosystems and Agricultural Engineering Faculty Publications

This perspective systematically summarizes the use of solid substrate co‐cultures in agriculture, food, plant, and industrial biotechnology applications. The summarization is organized by organism, i.e. fungus, bacteria, yeast and then co‐cultivation of either two or three organisms. Generally, in solid substrate co‐culture, the organisms synergistically penetrate and degrade the solid substrate, thereby increasing product yield and productivity over a monoculture. Efforts to increase co‐culture performance include optimizing process parameters (pH, temperature, moisture, and oxygen demand) and defining the acceptable types of substrate. Scientific challenges exist in understanding the interactions between microbial stains, such as viability, suite of products, and bio‐transformations. …

A Prototype Decision Support Tool For Ballast Water Risk Management Using A Combination Of Hydrodynamic Models And Agent-Based Modelling, Fleming T. Hansen, Jesper H. Andersen, Michael Potthof, Thomas Uhrenholdt, Hong D. Vo, Olof Lindén

NSBWO

We report the development of a prototype Decision Support Tool (DST) for modelling the risks of spreading of non-indegenous invasive species via ballast water. The DST constitutes of two types of models: A 3D hydrodynamical model calculates the currents in the North Sea and Danish Straits, and an agent-based model estimates the dispersal of selected model organisms with the prevailing currents calculated by the 3D hydrodynamical model. The analysis is concluded by a post processing activity, where scenarios of dispersal are combined into an interim estimate of connectivity within the study area. The latter can be used as a tool …