Biology Commons^™

Variation In Habitat Thresholds: An Analysis Of Minimum Habitat Requirements Of North American Breeding Birds, Yntze Van Der Hoek

Dissertations, Theses, and Capstone Projects

Many species show dramatic changes in population extinction or persistence probability at particular habitat amounts. These `extinction thresholds' could be translated to conservation targets, under the condition that we can derive generalities. I investigated the level of variation in landscape-level habitat thresholds for a suite of North American, forest-associated, breeding birds. Records from Breeding Bird Atlases and the availability of remotely-sensed land cover data allowed me to compare habitat thresholds for 25 species across the states of Massachusetts, Michigan, New York, Ohio, Pennsylvania, and Vermont. I show that variation in thresholds is considerable (Chapter II, III), as thresholds range from …

A Systematic Revision Of North American Tolypella A. Braun (Charophyceae, Charophyta), William Perez

Dissertations, Theses, and Capstone Projects

Charophyta comprises the algal classes Mesostigmatophyceae, Chlorokybophyceae, Klebsormidiophyceae, Coleochaetophyceae and Zygnematophyceae and the land plants. However, the precise phylogenetic position of these algal classes with respect to land plants is unresolved as are the phylogenetic relationships among genera in Charophyceae (Characeae). Characeae contains two tribes with six genera: tribe Chareae (Chara, Lamprothamnium, Lychnothamnus and Nitellopsis) and tribe Nitelleae (Nitella and Tolypella). Tolypella was considered the third most species-rich genus but, in the most comprehensive taxonomic treatment of Characeae, 16 Tolypella species were consolidated into two species, T. nidifica and T. intricata in sections Rothia …

Cryptic Diversity And Conservation Of Gopher Frogs Across The Southeastern United States, Stephen C. Richter, Eric M. O’Neill, Schyler O. Nunziata, Andrew Rumments, Emily S. Gustin, Jeanne E. Young, Brian I. Crother

Biological Sciences Faculty and Staff Research

Identifying cryptic biodiversity is fundamental to evolutionary biology and to conservation efforts. This study investigated range-wide genetic diversity of Gopher Frogs, Lithobates capito, across the southeastern United States coastal plain to determine implications for taxonomy and conservation. We collected data for two mtDNA regions in 21 populations to identify genetic structure across the geographic distribution of the species. Based on population genetic, phylogenetic, and genealogical analyses, we recovered three reciprocally monophyletic mtDNA lineages corresponding to mainland coastal plain populations and two lineages within peninsular Florida. Breakpoints for these lineages did not occur in previously identified hotspots of amphibian phylogeographic breaks …

Pitcher Plants (Sarracenia) Provide A 21st-Century Perspective On Infraspecific Ranks And Interspecific Hybrids: A Modest Proposal* For Appropriate Recognition And Usage, Aaron M. Ellison, Charles C. Davis, Pat Calie, Robert F. C. Naczi

Biological Sciences Faculty and Staff Research

The taxonomic use of infraspecific ranks (subspecies, variety, subvariety, form, and subform), and the formal recognition of interspecific hybrid taxa, is permitted by the International Code of Nomenclature for algae, fungi, and plants. However, considerable confusion regarding the biological and systematic merits is caused by current practice in the use of infraspecific ranks, which obscures the meaningful variability on which natural selection operates, and by the formal recognition of those interspecific hybrids that lack the potential for inter-lineage gene flow. These issues also may have pragmatic and legal consequences, especially regarding the legal delimitation and management of threatened and endangered …

Probability Of Regenerating A Normal Limb After Bite Injury In The Mexican Axolotl (Ambystoma Mexicanum), Sierra Thompson, Laura Muzinic, Christopher Muzinic, Matthew L. Niemiller, S. Randal Voss

Biology Faculty Publications

Multiple factors are thought to cause limb abnormalities in amphibian populations by altering processes of limb development and regeneration. We examined adult and juvenile axolotls (Ambystoma mexicanum) in the Ambystoma Genetic Stock Center (AGSC) for limb and digit abnormalities to investigate the probability of normal regeneration after bite injury. We observed that 80% of larval salamanders show evidence of bite injury at the time of transition from group housing to solitary housing. Among 717 adult axolotls that were surveyed, which included solitary-housed males and group-housed females, approximately half presented abnormalities, including examples of extra or missing digits and …

Obligate Male Death And Sexual Cannibalism In Dark Fishing Spiders, Steven Schwartz, William E. Wagner, Eileen A. Hebets

Eileen Hebets Publications

Male dark fishing spiders (Dolomedes tenebrosus Araneae, Pisauridae) always die during their first and only copulation, making all males monogynous. Such obligate male death can be adaptive if it facilitates sexual cannibalism, and if sexual cannibalism results in male reproductive benefits, such as an advantage in sperm competition through reduced female remating. We first conducted an experiment to determine the extent to which D. tenebrosus (1) males are cannibalized by females and (2) females engage in remating, both of which are prerequisites for several adaptive hypotheses of male self-sacrifice. We then conducted an experiment to test the hypothesis that …

Investigating Meter Scale Topographic Variation As A Factor Of Monterey Pine (Pinus Radiata) Growing Conditions At Kenneth Norris Rancho Marino Reserve, Cambria, Ca, William J. Meyst

Natural Resources Management and Environmental Sciences

Endemic Monterey pine (Pinus radiata) is limited to three locations in California due to its unique ecological requirements. This project was conducted to investigate spatial growth patterns ofMonterey pine over complex ground surfaces. The coastal hills of Rancho Marino Reserve, Cambria, were surveyed using four 150-m transects to quantify and record ground surface features and growing conditions ofMonterey pine. Changes in elevation of each transect were measured using an Abney level. Linear ground surfaces were found at 86% (344 of 400) of survey nodes. Convex ground surfaces were found at 10.5% of survey nodes (42 of 400). Of …

Mammals Of Kenya’S Protected Areas From 1888 To 2013, Aniko B. Toth, S. Kathleen Lyon, Anna K. Behrensmeyer

School of Biological Sciences: Faculty Publications

Kenya is a world leader in conservation and host to one of the most diverse array of mammals on the planet. As a focus of scientific attention, it is important to be able to assess not only the current state of Kenya’s mammal communities, but also how they have changed over anthropogenic timescales. Comprehensive lists of mammal species from known areas are essential for this goal, and these also provide comparative baselines for assessing changes in mammalian diversity in the future and in the fossil record. Though there is considerable literature available for mammals inhabiting Kenyan protected areas (National Parks …

Long-Term Genomic And Epigenomic Dysregulation As A Consequence Of Prenatal Alcohol Exposure: A Model For Fetal Alcohol Spectrum Disorders, Morgan L Kleiber, Eric J Diehl, Benjamin I Laufer, Katarzyna Mantha, Aniruddho Chokroborty-Hoque, Bonnie Alberry, Shiva M Singh

Biology Publications

There is abundant evidence that prenatal alcohol exposure leads to a range of behavioral and cognitive impairments, categorized under the term fetal alcohol spectrum disorders (FASDs). These disorders are pervasive in Western cultures and represent the most common preventable source of neurodevelopmental disabilities. The genetic and epigenetic etiology of these phenotypes, including those factors that may maintain these phenotypes throughout the lifetime of an affected individual, has become a recent topic of investigation. This review integrates recent data that has progressed our understanding FASD as a continuum of molecular events, beginning with cellular stress response and ending with a long-term …

Divergent Transcriptional Responses To Low Temperature Among Populations Of Alpine And Lowland Species Of New Zealand Stick Insects (Micrarchus)., Luke T Dunning, Alice B Dennis, Brent J Sinclair, Richard D Newcomb, Thomas R Buckley

Biology Publications

In widespread and genetically structured populations, temperature variation may lead to among-population differentiation of thermal biology. The New Zealand stick insect genus Micrarchus contains four species that inhabit different thermal environments, two of which are geographically widespread. RNA-Seq and quantitative PCR were used to investigate the transcriptional responses to cold shock among lowland and alpine species to identify cold-responsive transcripts that differ between the species and to determine whether there is intraspecific geographical variation in gene expression. We also used mitochondrial DNA, nuclear 28S ribosomal DNA and transcriptome-wide SNPs to determine phylogeographic structure and the potential for differences in genetic …

Metal Release From Serpentine Soils In Sri Lanka, Meththika Vithanage, Anushka Upamali Rajapaksha, Christopher Oze, Nishanta Rajakaruna, C. B. Dissanayake

Biological Sciences

Ultramafic rocks and their related soils (i.e., serpentine soils) are non-anthropogenic sources of metal contamination. Elevated concentrations of metals released from these soils into the surrounding areas and groundwater have ecological-, agricultural-, and human health-related consequences. Here we report the geochemistry of four different serpentine soil localities in Sri Lanka by coupling interpretations garnered from physicochemical properties and chemical extractions. Both Ni and Mn demonstrate appreciable release in water from the Ussangoda soils compared to the other three localities, with Ni and Mn metal release increasing with increasing ionic strengths at all sites. Sequential extraction experiments, utilized to identify “elemental …

West Coast Rock Lobster Harvest Strategy And Control Rules : 2014 – 2019, Department Of Fisheries

Fisheries management papers

No abstract provided.

Association Between Symptomatic Vulvovaginal Candidiasis And Hiv Rna Levels In Plasma And Genital Secretions Among Women On Haart, Teke Apalata, William H. Carr, Benjamin Longo-Mbenza, Willem A. Sturm, P. Moodley

Publications and Research

Background. Genital tract (GT) inflammation plays a major role in HIV transmission. We aimed to determine the association between symptomatic vulvovaginal candidiasis (VVC) and HIV RNA levels in plasma and GTs of HIV-infected women on highly active antiretroviral therapy (HAART).

Method. Women with VVC on HAART were recruited from a primary healthcare clinic in KwaZulu-Natal Province, South Africa, between June 2011 and December 2011. VVC was diagnosed clinically, supported by Gram staining and culture of genital secretions. HIV RNA load was determined by reverse transcription polymerase chain reaction. CD4+ counts were obtained from patients’ medical records.

Results. Plasma HIV RNA …

Communal Nesting In The Cuban Twig Anole (Anolis Angusticeps) From South Bimini, Bahamas, Christopher D. Robinson, Bonnie K. Kircher, Michele A. Johnson

Biology Faculty Research

No abstract provided.

The Neotropical Genus Austrolebias: An Emerging Model Of Annual Killifishes, Nibia Berois, María J. Arezo, Rafael O. De Sá

Biology Faculty Publications

Annual fishes are found in both Africa and South America occupying ephemeral ponds that dried seasonally. Neotropical annual fishes are members of the family Rivulidae that consist of both annual and non-annual fishes. Annual species are characterized by a prolonged embryonic development and a relatively short adult life.

Males and females show striking sexual dimorphisms, complex courtship, and mating behaviors. The prolonged embryonic stage has several traits including embryos that are resistant to desiccation and undergo up to three reversible developmental arrests until hatching. These unique developmental adaptations are closely related to the annual fish life cycle and are the …

Biological Surveys Of Selected Lower Grand River Streams: Ionia, Kent, Muskegon, And Ottawa Counties, Michigan, August-September 2014, Michigan Department Of Environmental Quality Water Resources Division

Faculty and Professional Research

The biologic integrity and physical habitat conditions of the lower Grand River (Hydrologic Unit Code (HUC) 04050006) and selected tributaries were surveyed during August and September 2014 by staff of the Surface Water Assessment Section (SWAS), Water Resources Division (WRD). The objectives of this study were to: 1. Evaluate the attainment status of the other indigenous aquatic life and wildlife (OIALW) designated use. 2. Identify and investigate effects of nonpoint sources (NPS) of pollution. 3. Satisfy monitoring requests submitted by internal and external customers.

Bdla, Dipa And Induced Dispersion Contribute To Acute Virulence And Chronic Persistence Of Pseudomonas Aeruginosa, Yi Li, Olga E. Petrova, Shengchang Su, Gee Lau, Warunya Panmanee, Renuka Na, Daniel J. Hassett, David G. Davies, Karin Sauer

Biological Sciences Faculty Scholarship

The human pathogen Pseudomonas aeruginosa is capable of causing both acute and chronic infections. Differences in virulence are attributable to the mode of growth: bacteria growing planktonically cause acute infections, while bacteria growing in matrix-enclosed aggregates known as biofilms are associated with chronic, persistent infections. While the contribution of the planktonic and biofilm modes of growth to virulence is now widely accepted, little is known about the role of dispersion in virulence, the active process by which biofilm bacteria switch back to the planktonic mode of growth. Here, we demonstrate that P. aeruginosa dispersed cells display a virulence phenotype distinct …

Modeling The Transmission Dynamics Of Typhoid In Malaria Endemic Settings, Steady Mushayabasa, Claver P. Bhunu, Ngoni A. Mhlanga

Applications and Applied Mathematics: An International Journal (AAM)

Typhoid and malaria co-infection is a major public health problem in many developing countries. In this paper, a deterministic model for malaria and typhoid co-infection is proposed and analyzed. It has been established that the model exhibits a backward bifurcation phenomenon. Overall, the study reveals that a typhoid outbreak in malaria endemic settings may lead to higher cumulative cases of dually-infected individuals displaying clinical symptoms of both infections than singly-infected individuals displaying clinical symptoms of either malaria or typhoid.

Effect Of Toxic Metal On Root And Shoot Biomass Of A Plant A Mathematical Model, O. P. Misra, Preety Kalra

Applications and Applied Mathematics: An International Journal (AAM)

In this paper, a mathematical model is proposed to study the impact of toxic metals on plant growth dynamics due to transfer of the toxic metal in plant tissues. In the model, it is assumed that the plant uptakes the metal from the soil through the roots and then it is transfered in the plant tissues and cells by transport mechanisms. It is observed experimently that when toxic (heavy) metals combines with the nutrient they form a complex compound due to which nutrient loses its inherent properties and the natural charaterstics of the nutrient are damaged. It is noticed that …

Changes In Spring Arrival And Fall Departure Dates Of Migratory Birds As An Indication Of Local Climate Change: A Phenological Study Of New York State's Capital Region Using Citizen Science, Olivia C. Townsend

Honors Theses

Climate change is becoming an increasingly important topic of scientific research, and studies commonly analyze biological indicators. Migratory birds are responsive to environmental changes because life cycles depend on finding proper seasonal locations. eBird is a citizen science database launched by the Cornell Lab of Ornithology and National Audubon Society in 2002, and this study focused on eBird data to analyze migratory shifts over the past two decades for the Green-winged Teal (Anas crecca), Northern Pintail (Anas acuta), Bufflehead (Bucephala albeola), Common Goldeneye (Bucephala clangula), Common Merganser (Mergus merganser), Red-breasted Merganser (Mergus serrator), Canada Goose (Branta canadensis), Snow Goose (Chen …