Context-Specific Genomic Selection Strategies
Outperform Phenotypic Selection For Soybean
Quantitative Traits In The Progeny Row Stage,
2019
University of Tennessee, Knoxville
Context-Specific Genomic Selection Strategies Outperform Phenotypic Selection For Soybean Quantitative Traits In The Progeny Row Stage, Christopher J. Smallwood, Arnold M. Saxton, Jason D. Gillman, Hem S. Bhandari, Phillip A. Wadl, Benjamin D. Fallen, David L. Hyten, Qijian Song, Vincent R. Pantalone
Department of Agronomy and Horticulture: Faculty Publications
Evaluating different breeding selection strategies for relative utility is necessary to choose those that maximize efficiency. Soybean [Glycine max (L.) Merr.] seed yield and fatty acid, protein, and oil contents are all commercially important traits that display complex quantitative inheritance. A soybean population consisting of 860 F5–derived recombinant inbred lines (RILs), genotyped with 4867 polymorphic single nucleotide polymorphism (SNPs) was used to compare phenotypic and context specific genomic selection (GS) strategies. To simulate progeny rows, each RIL was grown in a single plot in 2010 in Knoxville, TN, and phenotype was recorded. A subset of 276 RILs …
Do Cover Crops And Corn Residue Removal
Affect Soil Thermal Properties?,
2019
University of Nebraska-Lincoln
Do Cover Crops And Corn Residue Removal Affect Soil Thermal Properties?, Michael Sindelar, Humberto Blanco-Canqui, Virginia L. Jin, Richard B. Ferguson
Department of Agronomy and Horticulture: Faculty Publications
Soil thermal properties govern the transport and storage of heat in the soil. How management practices such as crop residue removal and cover crop (CC) use affect these soil properties is not well understood. For example, CCs could provide physical cover and improve soil properties after main crop residue removal and thus ameliorate the negative effects of residue removal on soil thermal properties. We measured changes in soil thermal properties including soil thermal conductivity, thermal diffusivity, volumetric heat capacity, and related properties under corn (Zea mays L.) residue removal with and without winter cereal rye (Secale cereale L.) …
Cover Crops And Corn Residue Removal: Impacts On Soil
Hydraulic Properties And Their Relationships With Carbon,
2019
University of Nebraska-Lincoln
Cover Crops And Corn Residue Removal: Impacts On Soil Hydraulic Properties And Their Relationships With Carbon, Michael Sindelar, Humberto Blanco-Canqui, Virginia L. Jin, Richard B. Ferguson
Department of Agronomy and Horticulture: Faculty Publications
Large-scale crop residue removal may negatively affect soil water dynamics. Integrating cover crop (CC) with crop residue management can be a strategy to offset potential adverse effects of residue removal. We studied: (i) the impact of corn (Zea mays L.) residue removal (56%) with and without the use of winter rye (Secale cereale L.) CC on soil hydraulic properties, (ii) whether CC would ameliorate residue removal effects on hydraulic properties, and (iii) relationships of hydraulic properties with soil organic C (SOC) and other properties under irrigated no-till continuous corn on a silt loam in south central Nebraska after …
Predicting Longitudinal Traits Derived From
High-Throughput Phenomics In Contrasting
Environments Using Genomic Legendre Polynomials
And B-Splines,
2019
Virginia Polytechnic Institute and State University
Predicting Longitudinal Traits Derived From High-Throughput Phenomics In Contrasting Environments Using Genomic Legendre Polynomials And B-Splines, Mehdi Momen, Malachy T. Campbell, Harkamal Walia, Gota Morota
Department of Agronomy and Horticulture: Faculty Publications
Recent advancements in phenomics coupled with increased output from sequencing technologies can create the platform needed to rapidly increase abiotic stress tolerance of crops, which increasingly face productivity challenges due to climate change. In particular, high-throughput phenotyping (HTP) enables researchers to generate large-scale data with temporal resolution. Recently, a random regression model (RRM) was used to model a longitudinal rice projected shoot area (PSA) dataset in an optimal growth environment. However, the utility of RRM is still unknown for phenotypic trajectories obtained from stress environments. Here, we sought to apply RRM to forecast the rice PSA in control and water-limited …
Dedicated Bioenergy Crops And Water Erosion,
2019
University of Nebraska-Lincoln
Dedicated Bioenergy Crops And Water Erosion, Bharat Sharma Acharya, Humberto Blanco-Canqui, Robert B. Mitchell, Richard Cruse, David Laird
Department of Agronomy and Horticulture: Faculty Publications
Information on the water quality impact of perennial warmseason grasses (WSGs) when grown in marginal lands as dedicated energy crops is limited. We studied how WSGs affected runoff, sediment, and nutrient losses and related near-surface soil properties to those of no-till corn (Zea mays L.) on an eroded soil in southwestern Iowa and a center pivot corner in east-central Nebraska. The experiment at the eroded soil was established in 2012, and treatments included ‘Liberty’ switchgrass (Panicum virgatum L.) and no-till continuous corn. The experiment at the pivot corner was established in 2013 with ‘Liberty’ switchgrass, ‘Shawnee’ switchgrass, low-diversity grass …
Shifting Avian Spatial Regimes In A Changing Climate,
2019
University of Nebraska-Lincoln
Shifting Avian Spatial Regimes In A Changing Climate, Caleb P. Roberts, Craig R. Allen, David G. Angeler, Dirac Twidwell
Department of Agronomy and Horticulture: Faculty Publications
In the present era of rapid global change, development of early warnings of ecological regime shifts is a major focus in ecology. Identifying and tracking shifts in spatial regimes is a new approach with potential to enhance understanding of ecological responses to global change. Here, we show strong directional non-stationarity of spatial regimes identified by avian community body mass data. We do this by tracking 46 years of avian spatial regime movement in the North American Great Plains. The northernmost spatial regime boundary moved >590 km northward, and the southernmost boundary moved >260 km northward. Tracking spatial regimes affords decadal …
Rapid Metabolism Increases The Level Of 2,4-D Resistance At High Temperature In Common Waterhemp (Amaranthus Tuberculatus),
2019
Kansas State University
Rapid Metabolism Increases The Level Of 2,4-D Resistance At High Temperature In Common Waterhemp (Amaranthus Tuberculatus), Chandrima Shyam, Amit J. Jhala, Greg Kruger, Mithila Jugulam
Department of Agronomy and Horticulture: Faculty Publications
Common waterhemp emerges throughout the crop growing season in the Midwestern United States, and as a result, the seedlings are exposed to a wide range of temperature regimes. Typically, 2,4-D is used in the Midwest to control winter annual broad-leaf weeds before planting soybean and in an early post-emergence application in corn and sorghum; however, the evolution of 2,4-D-resistant common waterhemp in several Midwestern states may limit the use of 2.4-D for controlling this problem weed. Moreover, temperature is one of the crucial factors affecting weed control efficacy of 2,4-D. This research investigated the effect of temperature on efficacy of …
The Mitochondrial Genome Of Eleusine Indica And Characterization Of Gene Content Within Poaceae,
2019
Auburn University
The Mitochondrial Genome Of Eleusine Indica And Characterization Of Gene Content Within Poaceae, Nathan D. Hall, Hui Zhang, Jeffrey P. Mower, Joseph Scott Mcelroy, Leslie R. Goertzen
Department of Agronomy and Horticulture: Faculty Publications
Plant mitochondrial (mt) genome assembly provides baseline data on size, structure, and gene content, but resolving the sequence of these large and complex organelle genomes remains challenging due to fragmentation, frequent recombination, and transfers of DNA from neighboring plastids. Themt genome for Eleusine indica (Poaceae: goosegrass) is comprehensibly analyzed here, providing key reference data for an economically significant invasive species that is also the maternal parent of the allotetraploid crop Finger millet (Eleusine coracana). The assembled E. indica genome contains 33 protein coding genes, 6 rRNA subunits, 24 tRNA, 8 large repetitive regions 15 kb of transposable elements across a …
Adaptation Of Photosynthesis To Water Deficit In The Reproductive Phase Of A Maize (Zea Mays L.) Inbred Line,
2019
Henan Agricultural University
Adaptation Of Photosynthesis To Water Deficit In The Reproductive Phase Of A Maize (Zea Mays L.) Inbred Line, H.F. Zheng, L.F. Xin, J.M. Guo, J. Mao, X.P. Han, L. Jia, B.Y. Zheng, C.G. Du, Roger W. Elmore, Q.H. Yang, R.X. Shao
Department of Agronomy and Horticulture: Faculty Publications
Photosynthesis is sensitive to water deficit (WD) stress. Maize (Zea mays L.) yield is vulnerable to water stress, especially if it occurs during the reproductive stage. In this study, the expression patterns of photosynthesis-related genes, together with photosynthetic gas-exchange and fluorescence parameters were investigated in a maize inbred line exposed to 50% of field water capacity (moderate WD) for 15 d after tassel emergence. The results demonstrated that WD down-regulated expression of psbA, psbB, psbC, psbP, psaA, psaB, and cab, especially at later periods of WD stress. Besides, with the increased WD stress, the steady decline in the value of …
United States Midwest Soil And Weather Conditions
Influence Anaerobic Potentially Mineralizable Nitrogen,
2019
South Dakota State University
United States Midwest Soil And Weather Conditions Influence Anaerobic Potentially Mineralizable Nitrogen, Jason D. Clark, Kristen S. Veum, Fabian G. Fernandez, James J. Camberato, Paul R. Carter, Richard B. Ferguson, David W. Franzen, Daniel E. Kaiser, Newell R. Kitchen, Carrie A. M. Laboski, Emerson D. Nafziger, Carl J. Rosen, John E. Sawyer, John F. Shanahan
Department of Agronomy and Horticulture: Faculty Publications
Nitrogen provided to crops through mineralization is an important factor in N management guidelines. Understanding of the interactive effects of soil and weather conditions on N mineralization needs to be improved. Relationships between anaerobic potentially mineralizable N (PMNan) and soil and weather conditions were evaluated under the contrasting climates of eight US Midwestern states. Soil was sampled (0–30 cm) for PMNan analysis before pre-plant N application (PP0N) and at the V5 development stage from the pre-plant 0 (V50N) and 180 kg N ha−1 (V5180N) rates and incubated for 7, 14, and …
Effects Of Potassium Source And Rate On Yield, Quality, And Leaf Chemistry Of Dark And Burley Tobacco, And Residual Effects Of Soil K Levels,
2019
University of Kentucky
Effects Of Potassium Source And Rate On Yield, Quality, And Leaf Chemistry Of Dark And Burley Tobacco, And Residual Effects Of Soil K Levels, Andrea Brooke Keeney
Theses and Dissertations--Plant and Soil Sciences
Field trials were conducted in 2016, 2017 and 2018 with dark fire-cured, dark air-cured, and burley tobacco at Princeton, Murray and Lexington Kentucky. Tobacco variety used in 2016 was a low converter (LC) variety, varieties used in 2017 and 2018 were LC and higher converter (HC) varieties. Potassium sources used at all locations and in all years were potassium sulfate (K2SO4) and potassium chloride (KCl). Application rates used at all locations and in all years were 93, 186, 279 kg K ha-1along with an untreated control that received no potassium. In all trials, tobacco …
Integrating Cover Crops And Herbicides For Horseweed [Conyza Canadensis (L.) Cronq.] Management Prior To Soybean [Glycine Max (L.) Merr.],
2019
University of Kentucky
Integrating Cover Crops And Herbicides For Horseweed [Conyza Canadensis (L.) Cronq.] Management Prior To Soybean [Glycine Max (L.) Merr.], Austin Sherman
Theses and Dissertations--Plant and Soil Sciences
Horseweed (Conyza canadensis (L.) Cronq.) is prevalent in Kentucky and can be difficult to control. Research has shown multiple weed control methods to be more sustainable than relying on chemical control alone, so the use of multiple methods for horseweed management was examined in this study. The main objective was to determine best practice(s) to reduce horseweed prior to soybean [Glycine max (L.) Merr.]. Treatments included: fall-planted cover crop [CC; cereal rye (Secale cereale L.) or none], fall-applied herbicide (saflufenacil or none), and spring-applied herbicides (dicamba, 2,4-D ester, or none). We hypothesized horseweed densities would be reduced …
Identification Of Sero-Diagnostic Antigens For The Early Diagnosis Of Johne’S Disease Using Map Protein Microarrays,
2019
Pennsylvania State University
Identification Of Sero-Diagnostic Antigens For The Early Diagnosis Of Johne’S Disease Using Map Protein Microarrays, Lingling Li, J. P. Bannantine, Joseph J. Campo, Arlo Randall, Yrjo T. Grohn, Megan A. Schilling, Robab Katani, Jessica Radzio-Basu, Laurel Easterling, Vivek Kapur
United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications
Considerable effort has been directed toward controlling Johne’s disease (JD), a chronic granulomatous intestinal inflammatory disease caused by Mycobacterium avium subsp. paratuberculosis (MAP) in cattle and other ruminants. However, progress in controlling the spread of MAP infection has been impeded by the lack of reliable diagnostic tests that can identify animals early in the infection process and help break the transmission chain. To identify reliable antigens for early diagnosis of MAP infection, we constructed a MAP protein array with 868 purified recombinant MAP proteins, and screened a total of 180 well-characterized serum samples from cows assigned to 4 groups based …
Quantification Of Macrophages And Mycobacterium Avium Subsp. Paratuberculosis In Bovine Intestinal Tissue During Different Stages Of Johne’S Disease,
2019
USDA-ARS, National Animal Disease Center & La Trobe University, Bundoor
Quantification Of Macrophages And Mycobacterium Avium Subsp. Paratuberculosis In Bovine Intestinal Tissue During Different Stages Of Johne’S Disease, Caitlin J. Jenvey, Jesse M. Hostetter, Adrienne L. Shircliff, John Bannantine, Judith R. Stabel
United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications
Johne’s disease is an enteric disease caused by the intracellular pathogen Mycobacterium avium subsp. paratuberculosis (MAP). Upon ingestion of MAP, it is translocated across the intestinal epithelium and may be killed by intestinal macrophages, or depending on the bacterial burden and immunological status of the animal, MAP may thwart innate defense mechanisms and persist within the macrophage. This study aimed to determine the numbers of macrophages and MAP present in bovine midileal tissue during different stages of infection. Immunofluorescent (IF) labeling was performed on frozen bovine midileal intestinal tissue collected from 28 Holstein dairy cows. The number of macrophages in …
Wolves: A Primer For Ranchers,
2019
Oregon State University Extension
Wolves: A Primer For Ranchers, John Williams, Douglas E. Johnson, Patrick E. Clark, Larry L. Larson, Tyanne J. Roland
United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications
Ranch management has become more complex since wolves were reintroduced into Idaho and Wyoming in 1996. In wolf areas, livestock have experienced increased death loss and greater stress. Increased livestock aggressiveness has been observed, especially toward working dogs, making handling livestock more difficult. Additionally ranchers have reported a loss of body condition, lower conception rates, increased time and expense for management. Our study was designed to investigate the effect of wolf presence on cattle behavior, landscape use patterns, and resource selection by comparing high wolf density areas against low wolf density areas. This study also generated baseline information on cattle …
Spatial Associations Of Livestock Guardian Dogs And Domestic Sheep,
2019
Utah State University
Spatial Associations Of Livestock Guardian Dogs And Domestic Sheep, Julie Young, John P. Draper, Daniel Kinka
Human–Wildlife Interactions
Livestock guardian dogs (Canis lupus familiaris; LGDs) have been used for centuries to protect livestock, primarily domestic sheep (Ovis aries), from depredation by large carnivores. While previous studies have shown their efficacy, the mechanisms in which LGDs protect livestock have largely remained unstudied. Livestock guardian dogs are often considered to be effective only if they remain in spatial proximity to the livestock they are protecting. We determined space use of LGDs relative to domestic sheep on open-range grazing allotments used by working ranches in the Rocky Mountains area of the northwest United States between August 2012 …
A Review Of Rat Lungworm Infection And Recent Data On Its Definitive Hosts In Hawaii,
2019
USDA APHIS WS, National Wildlife Research Center
A Review Of Rat Lungworm Infection And Recent Data On Its Definitive Hosts In Hawaii, Chris N. Niebuhr, Susan I. Jarvi, Shane R. Siers
Human–Wildlife Interactions
Rat lungworm (Angiostrongylus cantonensis) is a zoonotic nematode that causes rat lungworm disease (angiostrongyliasis), a potentially debilitating form of meningitis, in humans worldwide. The definitive hosts for rat lungworm are primarily members of the genus Rattus, with gastropods as intermediate hosts. This parasite has emerged as an important public health concern in the United States, especially in Hawaii, where the number of human cases has increased in the last decade. Here we discuss the current knowledge of the rat lungworm, including information on the life cycle and host species, as well as updates on known infection levels. Three …
Application Strategy For An Anthraquinone-Based Repellent And The Protection Of Soybeans From Canada Goose Depredation,
2019
USDA APHIS WS NWRC
Application Strategy For An Anthraquinone-Based Repellent And The Protection Of Soybeans From Canada Goose Depredation, Scott J. Werner, Matthew Gottlob, Charles D. Dieter, Joshua D. Stafford
Human–Wildlife Interactions
Agricultural crops can sustain extensive damage caused by Canada geese (Branta canadensis) when these crops are planted near wetlands or brood-rearing sites. From 2000 to 2015, South Dakota Game, Fish and Parks spent >$5.6 million to manage damages caused by Canada geese to agricultural crops (primarily soybeans) in South Dakota, USA. For the purpose of developing a repellent application strategy for nonlethal goose damage management, we comparatively evaluated the width of anthraquinone applications (i.e., 9.4 L Flight Control® Plus goose repellent/ha [active ingredient: 50% 9,10-anthraquinone] at 0–36 m versus 0–73 m perpendicular to the edge of wetlands …
European Starlings Fly Before They Fledge,
2019
USDA APHIS Wildlife Services
European Starlings Fly Before They Fledge, Jeremiah L. Psiropoulos, Lisa A. Selner
Human–Wildlife Interactions
Aircraft bird strikes are increasing globally. Bird strikes constitute a major human health and safety risk and result in millions of dollars in economic impacts. Invasive avian species, such as the European starling (Sturnus vulgaris; starlings), have been implicated in bird strikes in North America. Because this species is highly adaptive and has been successful at establishing in new areas, such as airports, it is essential that managers better understand the potential risks and how to mitigate them. Herein we present a case study regarding a novel observation of unique starling nesting behavior that may pose a risk …
Cost–Benefit Analysis Of Coyote Removal As A Management Option In Texas Cattle Ranching,
2019
CKWRI, Texas A&M University-Kingsville
Cost–Benefit Analysis Of Coyote Removal As A Management Option In Texas Cattle Ranching, R. Kyle Brewster, Scott E. Henke, Benjamin L. Turner, John M. Tomeček, Alfonso Ortega-S.
Human–Wildlife Interactions
The monetary value of livestock losses attributed to coyote (Canis latrans) predation in North America has increased during the past 20 years. In Texas, USA alone in 2011, these loses were estimated at $6.9 million. To mitigate coyote-related livestock losses, several lethal and nonlethal control methods have been developed. However, there remains a need for better information to guide management decisions regarding cost-effective predator control strategies for livestock production systems. We acquired data, which was used in the model, from published literature from 1960 to present day, subject matter experts, and anecdotal information on coyote ecology. We developed …
