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- Journal of Modern Applied Statistical Methods (55)
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Articles 31 - 60 of 102
Full-Text Articles in Statistical Theory
Bootstrapping Confidence Intervals For Robust Measures Of Association, Jason E. King
Bootstrapping Confidence Intervals For Robust Measures Of Association, Jason E. King
Journal of Modern Applied Statistical Methods
A Monte Carlo simulation study compared four bootstrapping procedures in generating confidence intervals for the robust Winsorized and percentage bend correlations. Results revealed the superior resiliency of the robust correlations over r, with neither outperforming the other. Unexpectedly, the bootstrapping procedures achieved roughly equivalent outcomes for each correlation.
Letters To The Editor, Jmasm Editors
Letters To The Editor, Jmasm Editors
Journal of Modern Applied Statistical Methods
No abstract provided.
On Treating A Survey Of Convenience Sample As A Simple Random Sample, W. Gregory Thatcher, J. Wanzer Drane
On Treating A Survey Of Convenience Sample As A Simple Random Sample, W. Gregory Thatcher, J. Wanzer Drane
Journal of Modern Applied Statistical Methods
Threat of bias has kept many from using data gathered in less than optimal conditions. We maintain that when convenience sampling represents race and gender at nearly correct proportions and can be beneficial, as these two variables are quite often used as stratification variables. We compared a convenience sample with a proven sample. Race and Sex were nearly proportional as was found in the proven sample. We conclude that the convenience sample can be used as though it is simple random.
Fortune Cookies, Measurement Error, And Experimental Design, Greogry R. Hancock
Fortune Cookies, Measurement Error, And Experimental Design, Greogry R. Hancock
Journal of Modern Applied Statistical Methods
This article pertains to the theoretical and practical detriments of measurement error in traditional univariate and multivariate experimental design, and points toward modern methods that facilitate greater accuracy in effect size estimates and power in hypothesis testing.
Correcting Publication Bias In Meta-Analysis: A Truncation Approach, Guillermo Montes, Bohdan S. Lotyczewski
Correcting Publication Bias In Meta-Analysis: A Truncation Approach, Guillermo Montes, Bohdan S. Lotyczewski
Journal of Modern Applied Statistical Methods
Meta-analyses are increasingly used to support national policy decision making. The practical implications of publications bias in meta-analysis are discussed. Standard approaches to correct for publication bias require knowledge of the selection mechanism that leads to publication. In this study, an alternative approach is proposed based on Cohen’s corrections for a truncated normal. The approach makes less assumptions, is easy to implement, and performs well in simulations with small samples. The approach is illustrated with two published meta-analyses.
Comparison Of Viral Trajectories In Aids Studies By Using Nonparametric Mixed-Effects Models, Chin-Shang Li, Hua Liang, Ying-Hen Hsieh, Shiing-Jer Twu
Comparison Of Viral Trajectories In Aids Studies By Using Nonparametric Mixed-Effects Models, Chin-Shang Li, Hua Liang, Ying-Hen Hsieh, Shiing-Jer Twu
Journal of Modern Applied Statistical Methods
The efficacy of antiretroviral therapies for human immunodeficiency virus (HIV) infection can be assessed by studying the trajectory of the changing viral load with treatment time, but estimation of viral trajectory parameters by using the implicit function form of linear and nonlinear parametric models can be problematic. Using longitudinal viral load data from a clinical study of HIV-infected patients in Taiwan, we described the viral trajectories by applying a nonparametric mixed-effects model. We were then able to compare the efficacies of highly active antiretroviral therapy (HAART) and conventional therapy by using Young and Bowman’s (1995) test.
Deconstructing Arguments From The Case Against Hypothesis Testing, Shlomo S. Sawilowsky
Deconstructing Arguments From The Case Against Hypothesis Testing, Shlomo S. Sawilowsky
Journal of Modern Applied Statistical Methods
The main purpose of this article is to contest the propositions that (1) hypothesis tests should be abandoned in favor of confidence intervals, and (2) science has not benefited from hypothesis testing. The minor purpose is to propose (1) descriptive statistics, graphics, and effect sizes do not obviate the need for hypothesis testing, (2) significance testing (reporting p values and leaving it to the reader to determine significance) is subjective and outside the realm of the scientific method, and (3) Bayesian and qualitative methods should be used for Bayesian and qualitative research studies, respectively.
A Critical Examination Of The Use Of Preliminary Tests In Two-Sample Tests Of Location, Kimberly T. Perry
A Critical Examination Of The Use Of Preliminary Tests In Two-Sample Tests Of Location, Kimberly T. Perry
Journal of Modern Applied Statistical Methods
This paper explores the appropriateness of testing the equality of two means using either a t test, the Welch test, or the Wilcoxon-Mann-Whitney test for two independent samples based on the results of using two classes of preliminary tests (i.e., tests for population variance equality and symmetry in underlying distributions).
Confidence Intervals For P(X Less Than Y) In The Exponential Case With Common Location Parameter, Ayman Baklizi
Confidence Intervals For P(X Less Than Y) In The Exponential Case With Common Location Parameter, Ayman Baklizi
Journal of Modern Applied Statistical Methods
The problem considered is interval estimation of the stress - strength reliability R = P(Xθ and λ respectively and a common location parameter μ . Several types of asymptotic, approximate and bootstrap intervals are investigated. Performances are investigated using simulation techniques and compared in terms of attainment of the nominal confidence level, symmetry of lower and upper error rates, and expected length. Recommendations concerning their usage are given.
Approximate Bayesian Confidence Intervals For The Variance Of A Gaussian Distribution, Vincent A. R. Camara
Approximate Bayesian Confidence Intervals For The Variance Of A Gaussian Distribution, Vincent A. R. Camara
Journal of Modern Applied Statistical Methods
The aim of the present study is to obtain and compare confidence intervals for the variance of a Gaussian distribution. Considering respectively the square error and the Higgins-Tsokos loss functions, approximate Bayesian confidence intervals for the variance of a normal population are derived. Using normal data and SAS software, the obtained approximate Bayesian confidence intervals will then be compared to the ones obtained with the well known classical method. The Bayesian approach relies only on the observations. It is shown that the proposed approximate Bayesian approach relies only on the observations. The classical method, that uses the Chi-square statistic, does …
A Comparison Of Equivalence Testing In Combination With Hypothesis Testing And Effect Sizes, Christopher J. Mecklin
A Comparison Of Equivalence Testing In Combination With Hypothesis Testing And Effect Sizes, Christopher J. Mecklin
Journal of Modern Applied Statistical Methods
Equivalence testing, an alternative to testing for statistical significance, is little used in educational research. Equivalence testing is useful in situations where the researcher wishes to show that two means are not significantly different. A simulation study assessed the relationships between effect size, sample size, statistical significance, and statistical equivalence.
Semi-Parametric Box-Cox Power Transformation Models For Censored Survival Observations, Tianxi Cai, Lu Tian, L. J. Wei
Semi-Parametric Box-Cox Power Transformation Models For Censored Survival Observations, Tianxi Cai, Lu Tian, L. J. Wei
Harvard University Biostatistics Working Paper Series
No abstract provided.
Unification Of Variance Components And Haseman-Elston Regression For Quantitative Trait Linkage Analysis, Wei-Min Chen, Karl W. Broman, Kung-Yee Liang
Unification Of Variance Components And Haseman-Elston Regression For Quantitative Trait Linkage Analysis, Wei-Min Chen, Karl W. Broman, Kung-Yee Liang
Johns Hopkins University, Dept. of Biostatistics Working Papers
Two of the major approaches for linkage analysis with quantitative traits in humans include variance components and Haseman-Elston regression. Previously, these have been viewed as quite separate methods. We describe a general model, fit by use of generalized estimating equations (GEE), for which the variance components and Haseman-Elston methods (including many of the extensions to the original Haseman-Elston method) are special cases, corresponding to different choices for a working covariance matrix. We also show that the regression-based test of Sham et al.(2002) is equivalent to a robust score statistic derived from our GEE approach. These results have several important implications. …
Smooth Quantile Ratio Estimation, Francesca Dominici, Leslie Cope, Daniel Q. Naiman, Scott L. Zeger
Smooth Quantile Ratio Estimation, Francesca Dominici, Leslie Cope, Daniel Q. Naiman, Scott L. Zeger
Johns Hopkins University, Dept. of Biostatistics Working Papers
In a study of health care expenditures attributable to smoking, we seek to compare the distribution of medical costs for persons with lung cancer or chronic obstructive pulmonary disease (cases) to those without (controls) using a national survey which includes hundreds of cases and thousands of controls. The distribution of costs is highly skewed toward larger values, making estimates of the mean from the smaller sample dependent on a small fraction of the biggest values. One approach to deal with the smaller sample is to rely on a simple parametric model such as the log-normal, but this makes the undesirable …
Statistical Inferences Based On Non-Smooth Estimating Functions, Lu Tian, Jun S. Liu, Mary Zhao, L. J. Wei
Statistical Inferences Based On Non-Smooth Estimating Functions, Lu Tian, Jun S. Liu, Mary Zhao, L. J. Wei
Harvard University Biostatistics Working Paper Series
No abstract provided.
On The Cox Model With Time-Varying Regression Coefficients, Lu Tian, David Zucker, L. J. Wei
On The Cox Model With Time-Varying Regression Coefficients, Lu Tian, David Zucker, L. J. Wei
Harvard University Biostatistics Working Paper Series
No abstract provided.
Maximum Likelihood Estimation Of Ordered Multinomial Parameters , Nicholas P. Jewell, Jack Kalbfleisch
Maximum Likelihood Estimation Of Ordered Multinomial Parameters , Nicholas P. Jewell, Jack Kalbfleisch
The University of Michigan Department of Biostatistics Working Paper Series
The pool-adjacent violator-algorithm (Ayer et al., 1955) has long been known to give the maximum likelihood estimator of a series of ordered binomial parameters, based on an independent observation from each distribution (see, Barlow et al., 1972). This result has immediate application to estimation of a survival distribution based on current survival status at a set of monitoring times. This paper considers an extended problem of maximum likelihood estimation of a series of ‘ordered’ multinomial parameters pi = (p1i, p2i, . . . , pmi) for 1 < = I < = k, where ordered means that pj1 < = pj2 < = .. . < = pjk for each j with 1 < = j < = m-1. The data consist of k independent observations X1, . . . ,Xk where Xi has a multinomial distribution with probability parameter pi and known index ni > = 1. By making use of variants of the pool adjacent violator algorithm, …
Nonparametric Estimation Of The Bivariate Recurrence Time Distribution, Chiung-Yu Huang, Mei-Cheng Wang
Nonparametric Estimation Of The Bivariate Recurrence Time Distribution, Chiung-Yu Huang, Mei-Cheng Wang
Johns Hopkins University, Dept. of Biostatistics Working Papers
This paper considers statistical models in which two different types of events, such as the diagnosis of a disease and the remission of the disease, occur alternately over time and are observed subject to right censoring. We propose nonparametric estimators for the joint distribution of bivariate recurrence times and the marginal distribution of the first recurrence time. In general, the marginal distribution of the second recurrence time cannot be estimated due to an identifiability problem, but a conditional distribution of the second recurrence time can be estimated non-parametrically. In literature, statistical methods have been developed to estimate the joint distribution …
Efficient Semiparametric Marginal Estimation For Longitudinal/Clustered Data, Naisyin Wang, Raymond J. Carroll, Xihong Lin
Efficient Semiparametric Marginal Estimation For Longitudinal/Clustered Data, Naisyin Wang, Raymond J. Carroll, Xihong Lin
The University of Michigan Department of Biostatistics Working Paper Series
We consider marginal generalized semiparametric partially linear models for clustered data. Lin and Carroll (2001a) derived the semiparametric efficinet score funtion for this problem in the mulitvariate Gaussian case, but they were unable to contruct a semiparametric efficient estimator that actually achieved the semiparametric information bound. We propose such an estimator here and generalize the work to marginal generalized partially liner models. Asymptotic relative efficincies of the estimation or throughout are investigated. The finite sample performance of these estimators is evaluated through simulations and illustrated using a longtiudinal CD4 count data set. Both theoretical and numerical results indicate that properly …
Equivalent Kernels Of Smoothing Splines In Nonparametric Regression For Clustered/Longitudinal Data, Xihong Lin, Naisyin Wang, Alan H. Welsh, Raymond J. Carroll
Equivalent Kernels Of Smoothing Splines In Nonparametric Regression For Clustered/Longitudinal Data, Xihong Lin, Naisyin Wang, Alan H. Welsh, Raymond J. Carroll
The University of Michigan Department of Biostatistics Working Paper Series
We compare spline and kernel methods for clustered/longitudinal data. For independent data, it is well known that kernel methods and spline methods are essentially asymptotically equivalent (Silverman, 1984). However, the recent work of Welsh, et al. (2002) shows that the same is not true for clustered/longitudinal data. First, conventional kernel methods fail to account for the within- cluster correlation, while spline methods are able to account for this correlation. Second, kernel methods and spline methods were found to have different local behavior, with conventional kernels being local and splines being non-local. To resolve these differences, we show that a smoothing …
Measuring Treatment Effects Using Semiparametric Models, Zhuo Yu, Mark J. Van Der Laan
Measuring Treatment Effects Using Semiparametric Models, Zhuo Yu, Mark J. Van Der Laan
U.C. Berkeley Division of Biostatistics Working Paper Series
In order to estimate the causal effect of treatments on an outcome of interest, one has to account for the effect of confounding factors which covary with the treatments and also contribute to the outcome of interest. In this paper, we use the semiparametric regression model to estimate the causal parameters. We assume the causal effect of the treatments can be described by the parametric component of the semiparametric regression model. Following the general methodology which was developed in van der Laan and Robins (2002) we give the orthogonal complement of the nuisance tangent space which identifies all the estimating …
Asymptotically Optimal Model Selection Method With Right Censored Outcomes, Sunduz Keles, Mark J. Van Der Laan, Sandrine Dudoit
Asymptotically Optimal Model Selection Method With Right Censored Outcomes, Sunduz Keles, Mark J. Van Der Laan, Sandrine Dudoit
U.C. Berkeley Division of Biostatistics Working Paper Series
Over the last two decades, non-parametric and semi-parametric approaches that adapt well known techniques such as regression methods to the analysis of right censored data, e.g. right censored survival data, became popular in the statistics literature. However, the problem of choosing the best model (predictor) among a set of proposed models (predictors) in the right censored data setting have not gained much attention. In this paper, we develop a new cross-validation based model selection method to select among predictors of right censored outcomes such as survival times. The proposed method considers the risk of a given predictor based on the …
Tree-Based Multivariate Regression And Density Estimation With Right-Censored Data , Annette M. Molinaro, Sandrine Dudoit, Mark J. Van Der Laan
Tree-Based Multivariate Regression And Density Estimation With Right-Censored Data , Annette M. Molinaro, Sandrine Dudoit, Mark J. Van Der Laan
U.C. Berkeley Division of Biostatistics Working Paper Series
We propose a unified strategy for estimator construction, selection, and performance assessment in the presence of censoring. This approach is entirely driven by the choice of a loss function for the full (uncensored) data structure and can be stated in terms of the following three main steps. (1) Define the parameter of interest as the minimizer of the expected loss, or risk, for a full data loss function chosen to represent the desired measure of performance. Map the full data loss function into an observed (censored) data loss function having the same expected value and leading to an efficient estimator …
Inference For The Population Total From Probability-Proportional-To-Size Samples Based On Predictions From A Penalized Spline Nonparametric Model, Hui Zheng, Rod Little
Inference For The Population Total From Probability-Proportional-To-Size Samples Based On Predictions From A Penalized Spline Nonparametric Model, Hui Zheng, Rod Little
The University of Michigan Department of Biostatistics Working Paper Series
Inference about the finite population total from probability-proportional-to-size (PPS) samples is considered. In previous work (Zheng and Little, 2003), penalized spline (p-spline) nonparametric model-based estimators were shown to generally outperform the Horvitz-Thompson (HT) and generalized regression (GR) estimators in terms of the root mean squared error. In this article we develop model-based, jackknife and balanced repeated replicate variance estimation methods for the p-spline based estimators. Asymptotic properties of the jackknife method are discussed. Simulations show that p-spline point estimators and their jackknife standard errors lead to inferences that are superior to HT or GR based inferences. This suggests that nonparametric …
Locally Efficient Estimation Of Nonparametric Causal Effects On Mean Outcomes In Longitudinal Studies, Romain Neugebauer, Mark J. Van Der Laan
Locally Efficient Estimation Of Nonparametric Causal Effects On Mean Outcomes In Longitudinal Studies, Romain Neugebauer, Mark J. Van Der Laan
U.C. Berkeley Division of Biostatistics Working Paper Series
Marginal Structural Models (MSM) have been introduced by Robins (1998a) as a powerful tool for causal inference as they directly model causal curves of interest, i.e. mean treatment-specific outcomes possibly adjusted for baseline covariates. Two estimators of the corresponding MSM parameters of interest have been proposed, see van der Laan and Robins (2002): the Inverse Probability of Treatment Weighted (IPTW) and the Double Robust (DR) estimators. A parametric MSM approach to causal inference has been favored since the introduction of MSM. It relies on correct specification of a parametric MSM to consistently estimate the parameter of interest using the IPTW …
Resampling-Based Multiple Testing: Asymptotic Control Of Type I Error And Applications To Gene Expression Data, Katherine S. Pollard, Mark J. Van Der Laan
Resampling-Based Multiple Testing: Asymptotic Control Of Type I Error And Applications To Gene Expression Data, Katherine S. Pollard, Mark J. Van Der Laan
U.C. Berkeley Division of Biostatistics Working Paper Series
We define a general statistical framework for multiple hypothesis testing and show that the correct null distribution for the test statistics is obtained by projecting the true distribution of the test statistics onto the space of mean zero distributions. For common choices of test statistics (based on an asymptotically linear parameter estimator), this distribution is asymptotically multivariate normal with mean zero and the covariance of the vector influence curve for the parameter estimator. This test statistic null distribution can be estimated by applying the non-parametric or parametric bootstrap to correctly centered test statistics. We prove that this bootstrap estimated null …
Maximization By Parts In Likelihood Inference, Peter Xuekun Song, Yanqin Fan, Jack Kalbfleisch
Maximization By Parts In Likelihood Inference, Peter Xuekun Song, Yanqin Fan, Jack Kalbfleisch
The University of Michigan Department of Biostatistics Working Paper Series
This paper presents and examines a new algorithm for solving a score equation for the maximum likelyhood estimate in certain problems of practical interest. The method circumvents the need to compute second order derivaties of the full likelihood function. It exploits the structure of certain models that yield a natural decomposition of a very complicated likelihood function. In this decomposition, the first part is a log likelihood from a simply analyzed model and the second part is used to update estimates from the first. Convergence properties of this fixed point algorithm are examined and asymptotics are derived for estimators obtained …
Double Robust Estimation In Longitudinal Marginal Structural Models, Zhuo Yu, Mark J. Van Der Laan
Double Robust Estimation In Longitudinal Marginal Structural Models, Zhuo Yu, Mark J. Van Der Laan
U.C. Berkeley Division of Biostatistics Working Paper Series
Consider estimation of causal parameters in a marginal structural model for the discrete intensity of the treatment specific counting process (e.g. hazard of a treatment specific survival time) based on longitudinal observational data on treatment, covariates and survival. We assume the sequential randomization assumption (SRA) on the treatment assignment mechanism and the so called experimental treatment assignment assumption which is needed to identify the causal parameters from the observed data distribution. Under SRA, the likelihood of the observed data structure factorizes in the auxiliary treatment mechanism and the partial likelihood consisting of the product over time of conditional distributions of …
A New Confidence Interval For The Difference Between Two Binomial Proportions Of Paired Data, Xiao-Hua Zhou, Gengsheng Qin
A New Confidence Interval For The Difference Between Two Binomial Proportions Of Paired Data, Xiao-Hua Zhou, Gengsheng Qin
UW Biostatistics Working Paper Series
Motivated by a study on comparing sensitivities and specificities of two diagnostic tests in a paired design when the sample size is small, we first derived an Edgeworth expansion for the studentized difference between two binomial proportions of paired data. The Edgeworth expansion can help us understand why the usual Wald interval for the difference has poor coverage performance in the small sample size. Based on the Edgeworth expansion, we then derived a transformation based confidence interval for the difference. The new interval removes the skewness in the Edgeworth expansion; the new interval is easy to compute, and its coverage …
Supervised Detection Of Regulatory Motifs In Dna Sequences, Sunduz Keles, Mark J. Van Der Laan, Sandrine Dudoit, Biao Xing, Michael B. Eisen
Supervised Detection Of Regulatory Motifs In Dna Sequences, Sunduz Keles, Mark J. Van Der Laan, Sandrine Dudoit, Biao Xing, Michael B. Eisen
U.C. Berkeley Division of Biostatistics Working Paper Series
Identification of transcription factor binding sites (regulatory motifs) is a major interest in contemporary biology. We propose a new likelihood based method, COMODE, for identifying structural motifs in DNA sequences. Commonly used methods (e.g. MEME, Gibbs sampler) model binding sites as families of sequences described by a position weight matrix (PWM) and identify PWMs that maximize the likelihood of observed sequence data under a simple multinomial mixture model. This model assumes that the positions of the PWM correspond to independent multinomial distributions with four cell probabilities. We address supervising the search for DNA binding sites using the information derived from …