Oceanography Commons^™

Detection Of Harmful Algal Blooms Using Photopigments And Absorption Signatures: A Case Study Of The Florida Red Tide Dinoflagellate, Gymnodinium Breve, David F. Millie, Oscar M. Schofield, Gary J. Kirkpatrick, Geir Johnson, Patricia A. Tester, Btyan T. Vintard

OES Faculty Publications

The utility of photopigments and absorption signatures to detect and enumerate the red tide dinoflagellate, Gymnodinium breve, was evaluated in laboratory cultures and in natural assemblages. The carotenoid, gyroxanthindiester, was an adequate biomarker for G. breve biomass; water‐column concentrations corresponded with cell standing crops and chlorophyll a concentrations during bloom events in Sarasota Bay, Florida. Unlike other carotenoids, the relative abundance of gyroxanthin‐diester did not change throughout a range of physiological states in culture and the gyroxanthin‐diester: chlorophyll a ratio exhibited little variability in a natural assemblage during bloom senescence. Stepwise discriminant analysis indicated that wavelengths indicative of in vivo …

Regulation Of Algal Blooms In Antarctic Shelf Waters By The Release Of Iron From Melting Sea Ice, Peter N. Sedwick, Giacomo R. Ditullio

OES Faculty Publications

During summer 1995-96, we measured iron in the water column and conducted iron-enrichment bottle-incubation experiments at a station in the central Ross Sea (76°30'S, 170°40'W), first, in the presence of melting sea ice, and 17 days later, in ice-free conditions. We observed a striking temporal change in mixed-layer dissolved iron concentrations at this station, from 0.72-2.3 nM with sea ice present, to 0.16-0.17 nM in ice-free conditions. These changes were accompanied doubling of algal (diatom) biomass. Our incubation experiments suggest that conditions were iron-replete in the presence of sea ice, and iron-deficient in the absence of sea ice. We surmise …

A Modeling Study Of The Effects Of Size- And Depth-Dependent Predation On Larval Survival, Margaret M. Dekshenieks, Eileen E. Hofmann, John M. Klinck, Eric N. Powell

CCPO Publications

The form of the predation pressure experienced by larval stages of marine invertebrates is largely unknown. However, it is believed that the type, timing and rate of larval predation are critical in determining recruitment to adult populations. In this study, a time and depth-dependent model of the growth and behavior of larvae of the Eastern oyster, Crassostrea virginica, was used to investigate the effects of different forms of size-and depth-dependent predation on larval survivorship. The simulated larval survival for a cohort experiencing size-dependent predation showed that the greatest percent of the cohort survived to competent settlement size when the …

Factors Affecting The Recruitment Of Juvenile Caribbean Spiny Lobsters Dwelling In Macroalgae, Mark J. Butler Iv, William F. Herrnkind, John H. Hunt

Biological Sciences Faculty Publications

In south Florida, Caribbean spiny lobsters (Panulirus argus) settle and spend their first few months in macroalgae or seagrass. After a few months, these ''algal-phase'' juveniles emerge from vegetation and, as ''postalgal-phase'' juveniles, seek refuge in crevices, often dwelling in groups. The importance of crevice shelters in determining the abundance of postalgal-phase juvenile spiny lobsters has been studied but we know little about the processes affecting lobster distribution and survival during their cryptic algal-dwelling phase. We found that postlarval supply varied independently of changes in the structure of macroalgal settlement habitat. For this reason, postlarval supply alone can not reliably …

Small-Scale Settlement Patterns Of The Oyster Crassostrea Virginica On A Constructed Intertidal Reef, Ian K. Bartol, Roger Mann

Biological Sciences Faculty Publications

The construction of three-dimensional, intertidal reefs resembling those widely present during colonial times in the Chesapeake Bay, but now absent due to years of overharvesting, may provide a more ecologically advantageous environment for oyster settlement and subsequent survival than present subtidal, two-dimensional habitats. We examined settlement processes on a constructed, 210 x 30 m intertidal reef composed of oyster shell. The reef was destructively and non-destructively sampled weekly throughout the summer and fall at tidal heights ranging from 30 cm above to 90 cm below mean low water (MLW) and at two substrate levels (reef surface and 10 cm below …

Modeling Nutrient And Plankton Processes In The California Coastal Transition Zone: 3. Lagrangian Drifters, J. R. Moisan, Eileen E. Hofmann

CCPO Publications

Two types of numerical Lagrangian drifter experiments were conducted, using a set of increasingly complex and sophisticated models, to investigate the processes associated with the plankton distributions in the California coastal transition zone (CTZ). The first experiment used a one-dimensional (1-D; vertical) time-dependent physical-bio-optical model, which contained a nine-component food web. Vertical velocities, along the track of simulated Lagrangian drifters, derived from a three-dimensional (3-D), primitive equation circulation model developed to simulate the flow observed within the CTZ; were used to parameterize the upwelling and downwelling processes. The second experiment used 880 simulated Lagrangian drifters from a 3-D primitive equation …

Modeling Nutrient And Plankton Processes In The California Coastal Transition Zone: 1. A Time- And Depth-Dependent Model, J. R. Moisan, Eileen E. Hofmann

CCPO Publications

A time- and depth-dependent, physical-bio-optical model was developed for the California coastal transition zone (CTZ) with the overall objective of understanding and quantifying the processes that contribute to the vertical and temporal development of nutrient and plankton distributions in the CTZ. The model food web components included silicate, nitrate, ammonium, two phytoplankton size fractions, copepods, doliolids, euphausiids, and a detritus pool. The wavelength-dependent subsurface irradiance field was attenuated by sea water and phytoplankton pigments. The one-dimensional (1-D) model adequately simulated the development and maintenance of a subsurface chlorophyll maximum in different regions within the CTZ. An analysis of the individual …

Modeling Nutrient And Plankton Processes In The California Coastal Transition Zone: 2. A Three-Dimensional Physical-Bio-Optical Model, J. R. Moisan, Eileen E. Hofmann, D. B. Haidvogel

CCPO Publications

A three-dimensional (3-D) primitive equation model, developed to simulate the circulation features (filaments) observed in the California coastal transition zone (CTZ), was coupled to a nine-component food web model and a bio-optical model. The simulated flow fields from a 3-D primitive equation model are used to advect the constituents of the food web model, which include silicate, nitrate, ammonium, two phytoplankton size fractions, copepods, doliolids, euphausiids, and a detritus pool. The bio-optical model simulates the wavelength-dependent attenuation of the subsurface irradiance field. The overall objective of this modeling study was to understand and quantify the processes that contribute to the …

Nutrients And Chlorophyll At The Shelf Break Off The Southeastern United States During The Genesis Of Atlantic Lows Experiment: Winter 1986, L. P. Atkinson, J. L. Miller, T. N. Lee, W. M. Dunstan

CCPO Publications

The outer shelf and upper slope off Charleston, South Carolina, were the site of oceanographic and meteorological measurements during the winter of 1986. The purpose of the study was to test ideas about front formation, heat transport, and stratification during cold air outbreaks. An ancillary part of the study was the observation of nutrients and chlorophyll concentrations. The observations extended across the shelf and sometimes crossed the Gulf Stream front. The results show slightly elevated nitrate concentrations in outer shelf waters (1 - 2 μM NO₃) with chlorophyll concentrations in the 1 - 1.8 μg L^-1 range. …

Observation Of Shelfwater Overrunning The Southern Slope Sea, Ajoy Kumar

OES Theses and Dissertations

Analyses of two years (1992 and 1993) of high resolution (1.47 km²) sea surface temperature satellite images of the southern Mid-Atlantic Bight (MAB), showed that unusually extensive overhang of shelf water occurs episodically, and coherently over along shelf distances of several hundred kilometers. These episodes are dubbed overrunning of the Slope Sea by shelf water. The overrunning volume has a "face" and a "back" (southern and northern limit). It transports substantial quantities of shelf water southward, and does not retreat onto the shelf, but eventually joins the western edge of the Gulf Stream in the vicinity of Chesapeake …

Recruitment Of Blue Crab, Callinectes Sapidus, Postlarvae To The Back-Barrier Lagoons Of Virginia's Eastern Shore, Robert D. Brumbaugh

OES Theses and Dissertations

Most research on the early life history of the blue crab, Callinectes sapidus, has been conducted in large partially stratified estuaries such as the Chesapeake Bay. In contrast, little is known about the recruitment dynamics or habitat requirements of blue crab postlarvae (megalopae) in shallow well-mixed lagoonal systems that make up a considerable part of the species' range. In Virginia's coastal lagoons, planktonic blue crab megalopae are most abundant at night on flooding tides, and are not abundant during the daytime or on ebbing tides. This appears to enhance retention within the lagoons, despite the short residence time of water …

The Effects Of Environmental Variability On The Population Structure Of The Eastern Oyster (Crassostrea Virginica): A Modeling Study, Margaret Mcmanus Dekshenieks

OES Theses and Dissertations

Three models were coupled to investigate the effects of changes in environmental conditions on the population structure of the Eastern oyster, Crassostrea virginica. The first model, a time-dependent model of the oyster population as described in Powell et al. (1992) and Hofmann et al. (1992, 1995), tracks the distribution, development, spawning, and mortality of sessile oyster populations. The post-settlement model incorporates mortality through parasitism, predation, food depletion and extremes in environmental conditions. The post-settlement model supplies the initial abundance of larvae spawned into the water column, and in turn is the recipient of cohorts of spawn which survive through metamorphosis. …

Seasonal And Mesoscale Variability In The Distribution Of Antarctic Krill, Euphausia Superba, West Of The Antarctic Peninsula, Cathy Meyer Lascara

OES Theses and Dissertations

Observations collected between November 1991 and September 1993 during four multidisciplinary cruises were analyzed to provide a description of seasonal and mesoscale variability in the distribution and abundance of Antarctic krill, Euphausia superba, within continental shelf waters west of the Antarctic Peninsula and to investigate possible relationships between variability in krill distributions and variability in selected environmental parameters. Acoustic measurements of krill were made each season at designated locations to estimate the abundance of krill, in terms of vertically-integrated krill biomass and the number of aggregations, characterize the depth distribution of krill, and provide a quantitative description of the size, …

A One-Dimensional Model For Storm Breaching Of Barrier Islands, Cheol Shik Shin

Civil & Environmental Engineering Theses & Dissertations

A set of numerical models is developed for simulating the four stages of barrier breaching characterized by one horizontal spatial dimension.

The SBEACH model is employed for the first stage of dune/beach erosion. The Lax-Wendroff two-step explicit scheme for Stage II is developed to simulate initiation of ocean flood propagation on initially dry barrier islands and the method of characteristics (MOC), is employed to compute additional boundary data. The development of the Preissmann implicit scheme for water motion and a forward time centered space explicit scheme for sediment motion in Stages III and IV provide a tool to study the …

Effect Of Light/Dark Transition On Carbon Translocation In Eelgrass Zostera Marina Seedlings, Richard C. Zimmerman, Randall S. Alberte

OES Faculty Publications

Carbon translocation in the marine macrophyte Zostera marina L. (eelgrass) was investigated to elucidate the impact of light/dark transitions on sucrose partitioning between roots and shoots. After exposure of leaves to C-14-bicarbonate, the level of C-14-labelled photoassimilates increased monotonically in both leaves and fully aerobic roots of plants maintained in the light. Accumulation of C-14 in roots and leaves ceased abruptly when plants were transferred to darkness that induced root anaerobiosis even though C-14 levels remained high in the dark-exposed leaves. Thus, translocation of C-14 photoassimilates from shoots to roots was inhibited when roots became anoxic. Anoxia induced by light …

A Coupled, Non-Linear, Steady State Model For Early Diagenetic Processes In Pelagic Sediments, Surya P. Dhakar, David J. Burdige

OES Faculty Publications

A steady state, coupled, non-linear model has been developed for early diagenetic processes in pelagic and hemi-pelagic marine sediments. Model results show that the occurrence of oxic and sub-oxic diagenetic processes is significantly affected by variations in parameters such as the sedimentation rate, bioturbation coefficient, sediment porosity, and organic matter flux to the sediments. Increases in the sedimentation rate or the bioturbation coefficient increase organic matter oxidation by sub-oxic processes, whereas an increase in sediment porosity decreases organic matter oxidation by sub-oxic processes. Sediment data from three contrasting MANOP sites are fit reasonably well with the model. The resulting best-fit …

Biogenic Matter Diagenesis On The Sea Floor: A Comparison Between Two Continental Margin Transects, William M. Berelson, Jim Mcmanus, Kenneth H. Coale, Kenneth S. Johnson, Tammy Kilgore, David J. Burdige, Cynthia Pilskaln

OES Faculty Publications

Benthic chamber measurements of the reactants and products involved with biogenic matter diagenesis (oxygen, ammonium, nitrate, silicate, phosphate, TCO₂, alkalinity) were used to define fluxes of these solutes into and out of the sediments off southern and central California. Onshore to offshore transects indicate many similarities in benthic fluxes between these regions. The pattern of benthic organic carbon oxidation as a function of water depth, combined with published sediment trap records, suggest that the supply of organic carbon from vertical rain can just meet the sedimentary carbon oxidation + burial demand for the central California region between the …

Modeling The Vertical Distribution Of Oyster Larvae In Response To Environmental Conditions, Margaret M. Dekshenieks, Eileen E. Hofmann, John M. Klinck, Eric N. Powell

CCPO Publications

A size-structured, time and vertically-dependent model was used to investigate the effects of water column structure on the distribution of larvae of the oyster Crassostrea virginica. Formulations used to model larval growth and behavior are based upon laboratory studies. Simulated vertical larval distributions obtained for conditions representative of a well-mixed, partially stratified and strongly stratified water column illustrate the effect that salinity and temperature gradients have on moderating larval swimming and hence on larvae vertical location. For well-mixed conditions, smaller larvae are dispersed throughout most of the water column. For strongly stratified conditions, the smaller-sized larvae cluster within the …

Circulation Near Submarine Canyons: A Modeling Study, John M. Klinck

CCPO Publications

Circulation near a submarine canyon is analyzed with a numerical model. Previous theoretical work indicated that stratification controlled the interaction of coastal flow with canyons, specifically, the ratio of canyon width to the internal radius of deformation. A wide canyon was thought to merely steer the flow, while a narrow canyon would create substantial cross-shelf exchange. Four cases are analyzed considering two directions of alongshore flow and two choices of initial stratification. The weakly stratified case has an internal radius about equal to the canyon width, while the strongly stratified case has one about 3 times the canyon width. The …

The Effect Of Arctic River Hydrological Cycles On Arctic Ocean Circulation, Peter Becker

OES Theses and Dissertations

Understanding Arctic Ocean circulation may be critical to fully understanding the global oceanic salt and heat cycles and their response to climate variability. This thesis examines how one important aspect of Arctic Ocean circulation, the effect of freshwater inflow, may contribute to the variability of these cycles. The multiple roles that freshwater runoff performs in the Arctic Ocean include: (1) the formation of shelf and basin scale density currents; (2) maintenance of the strong density stratification; (3) control of the thickness and strength of the ice pack; and (4) control of deep convection. Sources and sinks of freshwater in the …

On The Interpentadal Variability Of The North Atlantic Ocean: Model Simulated Changes In Transport, Meridional Heat Flux And Coastal Sea Level Between 1955-1959 And 1970-1974, Tal Ezer, George L. Mellor, Richard J. Greatbatch

CCPO Publications

Previous studies by Greatbatch et al. (1991) indicate significant changes in the North Atlantic thermohaline structure and circulation between the pentads 1955–1959 and 1970–1974, using data analyzed by Levitus (1989a,b,c) and a simple diagnostic model by Mellor et al. (1982). In this paper these changes are modeled using a three-dimensional, free surface, coastal ocean model. Diagnostic and short-term prognostic calculations are used to infer the dynamically adjusted fields corresponding to the observed hydrographic and wind stress climatology of each pentad. While the results agree with earlier studies indicating that the Gulf Stream was considerably weaker (by about 30 Sv) during …

The Evolution Of Density-Driven Circulation Over Sloping Bottom Topography, G. H. Wheless, J. M. Klinck

CCPO Publications

The short timescale temporal evolution of buoyancy-driven coastal flow over sloping bottom topography is examined using a two-dimensional, vertically averaged numerical model. Winter shelf circulation driven by a coastal ''point source'' buoyancy flux is modeled by initiating a coastal outflow with density anomaly epsilon into well-mixed shelf water. The nonlinear interaction between the time-varying velocity and density field is represented by an advection-diffusion equation. Three cases are discussed: that of a buoyant (epsilon < 0) outflow, a neutral (epsilon = 0) outflow, and a dense (epsilon > 0) outflow. Results are similar to observations from well-mixed shelf areas and show that density-topography interactions are capable of substantially influencing coastal circulation. A negative (buoyant) coastal …

A Feasibility Study Of Dynamical Assimilation Of Tide Gauge Data In The Chesapeake Bay, Yvette H. Spitz

OES Theses and Dissertations

The feasibility of dynamical assimilation of surface elevation from tide gauges is investigated to estimate the bottom drag coefficient and surface stress as a first step in improving modeled tidal and wind-driven circulation in the Chesapeake Bay. A two-dimensional shallow water model and an adjoint variational method with a limited memory quasi-Newton optimization algorithm are used to achieve this goal.

Assimilation of tide gauge observations from ten permanent stations in the Bay and use of a two-dimensional model adequately estimate the bottom drag coefficient, wind stress and surface elevation at the Bay mouth. Subsequent use of these estimates in the …

Dynamics Of Dipoles In The Middle Atlantic Bight, Bruce L. Lipphardt Jr.

OES Theses and Dissertations

Beginning with the observations made by the Warm-Core Rings program in the early 1980's, several Gulf Stream warm-core rings (WCR's) in the Middle Atlantic Bight (MAB) have been observed with one or more cyclones around their periphery. These ring systems are observed in the slope water between the Gulf Stream's western boundary and the shelf break. Observations of ring systems have motivated a reanalysis of existing satellite surface temperature imagery, which revealed that multipole structure is common for both warm and cold core rings. This suggests that rings are better characterized as one part of multipole systems rather than as …

Thermocline Circulation Driven At Surface Outcrops Of Isopycnal Surfaces, Gudavalli V. R. K. Vittal

OES Theses and Dissertations

Potential vorticity (PV) defined as: q = Δθ ^.(fk + Ω)

where θ is density anomaly, Ω (Δ x u) is relative vorticity, k is unit vertical vector and f the coriolis parameter, is used as a dynamical tracer to study the interior thermocline circulation. Using the generalized flux form of PV equation (Haynes and McIntyre, 1987), wind stress and buoyancy fluxes at surface outcrops of isopycnal surface are translated into PV fluxes. The PV flux condition so derived considers seasonal movement of the isopycnal outcrops and geostrophic turbulence.

A constant layer depth model, forced by the above flux …

Seasonal Variability Of Heat And Mass Transport Process In The Upper Tropical Atlantic Ocean: A Numerical Model Study, Sang-Ki Lee

OES Theses and Dissertations

A simple 2.5 layer numerical model was developed and used to illustrate the seasonal variability of heat and mass transports in the upper tropical Atlantic Ocean, associated with the seasonal movement of the Inter-Tropical Convergence Zone (ITCZ). The model ocean was forced by seasonally varying climatological wind and heat flux fields. The entrainment at the base of the mixed layer was scaled by wind stress and shear at the bottom of the mixed layer. On an annual average, the northward transport of the tropical warm water is about 11 Sv, with roughly 10 Sv associated with entrainment of upper thermocline …

Elimination Of Dissolved Sulfide Interference In The Flow-Injection Determination Of Sigma-Co2 By Addition Of Molybdate, Rigel L. Lustwerk, David J. Burdige

OES Faculty Publications

A previously described flow injection method for the analysis of ΣCO₂ included the addition of ZnCl₂ to some samples before analysis in order to precipitate dissolved sulfide (which interferes with the method) as ZnS. However, the use of Zn²⁺ in samples with high concentrations of dissolved sulfide causes the coprecipitation of ZnCO₃, and in our experience with this technique, ZnCO₃ also precipitates even in the absence of dissolved sulfide. The addition of molybdate effectively complexes dissolved sulfide without interfering with the determination of ΣCO2 by this technique.

Influence Of Zooplankton Grazing On Free Dissolved Enzymes In The Sea, Alexander B. Bochdansky, Staša Puškarić, Gerhard J. Herndl

OES Faculty Publications

In the Northern Adriatic Sea, extracellular enzymatic activity was measured during a Lagrangian study following a drifting buoy for 40 h. Dissolved free enzymatic activity represented 20 to 70% of total activity depending on the type of enzyme. alpha- and beta-glucosidases exhibited a significantly higher free activity than proteolytic enzymes. In subsequent laboratory experiments we investigated the effect of zooplankton on the free enzyme pool. The 4-step approach included: (1) determination of the enzymatic activities in copepods (mainly Acartia clausi); (2) enzymatic activity in fecal pellets; (3) short- and long-term grazing experiments; and (4) degradability of free glucosidase in seawater. …

Time To Metamorphosis Of Blue Crab Callinectes Sapidus Megalopae: Effects Of Benthic Macroalgae, Robert D. Brumbaugh, John R. Mcconaugha

OES Faculty Publications

There is growing evidence that postlarvae (megalopae) of the blue crab Callinectes sapidus can slow the progression through the molt cycle while in offshore nursery grounds, and delay metamorphosis until reinvasion of coastal habitat occurs. However, the cues that trigger metamorphosis of megalopae are not well known. This study tested the hypothesis that the time to metamorphosis (TTM) from the postlarval megalops stage to the first crab stage is shortened in the presence of 2 potential macroalgal settlement substrates, Ulva lactuca (Chlorophyta), and Gracilaria spp. (Rhodophyta). Megalopae and test water were collected from 3 locations (offshore, at a coastal inlet, …

Transport, Potential Vorticity, And Current/Temperature Structure Across Northwest Providence And Santaren Channels And The Florida Current Off Cay Sal Bank, Kevin D. Leaman, Peter S. Vertes, Larry P. Atkinson, Thomas N. Lee, Peter Hamilton, Evans Waddell

CCPO Publications

Currents and temperatures were measured using Pegasus current profilers across Northwest Providence and Santaren Channels and across the Florida Current off Cay Sal Bank during four cruises from November 1990 to September 1991. On average, Northwest Providence (1.2 Sv) and Santaren (1.8 Sv) contribute about 3 Sv to the total Florida Current transport farther north (e.g., 27°N). Partitioning of transport into temperature layers shows that about one-half of this transport is of ''18°C'' water (17°C-19.5°C); this can account for all of the ''excess'' 18°C water observed in previous experiments. This excess is thought to be injected into the 18°C layer …